Wall clock time and date at job start Tue Mar 31 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00145 * 2 1 4 4 N 1.34776 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.47514 * 118.75555 * 0.02562 * 4 2 1 6 6 C 1.53565 * 111.03310 * 138.34678 * 5 4 2 7 7 C 1.51541 * 109.57878 * 320.02258 * 6 5 4 8 8 O 1.42154 * 108.75409 * 91.39913 * 7 6 5 9 9 C 1.38017 * 119.44408 * 272.77220 * 8 7 6 10 10 H 1.09004 * 109.46606 * 303.42857 * 9 8 7 11 11 C 1.52998 * 109.47122 * 183.43376 * 9 8 7 12 12 N 1.46901 * 109.47283 * 64.98968 * 11 9 8 13 13 C 1.46906 * 110.99698 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.46688 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99634 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00399 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00062 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00141 * 179.72913 * 19 17 16 22 22 H 1.48502 * 109.46967 * 270.27331 * 21 19 17 23 23 H 1.48505 * 109.47170 * 30.26803 * 21 19 17 24 24 H 1.48498 * 109.47513 * 150.27417 * 21 19 17 25 25 C 1.45121 * 118.76169 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47420 * 239.99673 * 1 2 3 27 27 H 1.08994 * 109.47146 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 119.99620 * 1 2 3 29 29 H 1.08997 * 109.16441 * 258.74857 * 5 4 2 30 30 H 1.09003 * 109.16387 * 17.99400 * 5 4 2 31 31 H 1.08997 * 109.45389 * 80.05071 * 6 5 4 32 32 H 1.08994 * 109.45236 * 199.99305 * 6 5 4 33 33 H 1.08995 * 109.59133 * 211.18705 * 7 6 5 34 34 H 1.09003 * 109.58703 * 331.47224 * 7 6 5 35 35 H 1.08996 * 109.46826 * 304.98856 * 11 9 8 36 36 H 1.09004 * 109.46850 * 184.99433 * 11 9 8 37 37 H 1.00891 * 111.00010 * 303.95591 * 12 11 9 38 38 H 1.09003 * 109.46625 * 60.00478 * 13 12 11 39 39 H 1.08993 * 109.47154 * 300.00621 * 13 12 11 40 40 H 0.96991 * 120.00493 * 0.02562 * 16 14 13 41 41 H 0.97005 * 120.00032 * 359.72836 * 20 19 17 42 42 H 1.08995 * 109.46338 * 149.28497 * 25 4 2 43 43 H 1.09002 * 109.45819 * 29.32007 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4159 -2.4284 0.0005 6 6 2.0461 -3.4553 -0.9516 7 6 2.5141 -2.7579 -2.2130 8 8 3.8684 -2.3619 -2.0407 9 6 4.1499 -1.1428 -1.4582 10 1 3.6594 -0.3490 -2.0217 11 6 5.6624 -0.9122 -1.4634 12 7 6.1358 -0.7994 -2.8494 13 6 7.5872 -0.5763 -2.8935 14 6 8.0351 -0.4667 -4.3281 15 8 7.2250 -0.5642 -5.2256 16 7 9.3358 -0.2592 -4.6139 17 6 9.7433 -0.1588 -5.9191 18 1 9.0220 -0.2457 -6.7183 19 6 11.0844 0.0545 -6.2139 20 7 11.9619 0.1607 -5.2415 21 14 11.6407 0.1837 -7.9924 22 1 11.9945 -1.1665 -8.4996 23 1 10.5413 0.7490 -8.8152 24 1 12.8285 1.0709 -8.0763 25 6 3.6318 -1.1357 0.0011 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3632 -0.5138 -0.8901 29 1 1.4017 -2.8383 1.0104 30 1 0.3932 -2.2265 -0.3180 31 1 2.8967 -3.9298 -0.4624 32 1 1.3064 -4.2133 -1.2091 33 1 2.4379 -3.4417 -3.0584 34 1 1.8947 -1.8798 -2.3964 35 1 6.1595 -1.7513 -0.9768 36 1 5.8915 0.0076 -0.9251 37 1 5.8783 -1.6135 -3.3868 38 1 8.0979 -1.4130 -2.4167 39 1 7.8292 0.3458 -2.3652 40 1 9.9836 -0.1808 -3.8963 41 1 11.6729 0.0940 -4.3179 42 1 4.0138 -2.0110 0.5263 43 1 3.9752 -0.2318 0.5043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199600015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:04 Heat of formation + Delta-G solvation = -137.405517 kcal Electronic energy + Delta-G solvation = -24575.692701 eV Core-core repulsion = 20847.959038 eV Total energy + Delta-G solvation = -3727.733663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.65217 -40.36198 -39.67297 -37.17076 -36.49502 -36.08457 -33.95526 -33.13094 -31.68967 -30.35701 -28.20771 -27.40273 -26.17816 -24.59975 -22.90833 -22.32644 -21.53382 -20.11553 -19.98370 -18.46746 -18.32922 -17.85359 -17.54987 -17.04405 -16.86602 -16.64966 -16.14245 -15.67009 -15.60154 -15.22388 -14.97471 -14.94883 -14.65077 -14.35331 -13.77656 -13.53837 -13.40239 -13.38452 -13.24652 -13.07422 -13.00929 -12.73174 -12.68142 -12.29659 -12.07111 -11.94702 -11.90242 -11.57831 -11.53975 -10.94261 -10.63666 -10.45377 -10.12705 -9.69780 -9.43265 -8.94723 -6.08445 1.50926 1.52891 1.54088 1.82024 1.94865 1.98486 2.39297 2.62310 2.77467 3.14929 3.33967 3.59012 3.77735 3.88549 3.92986 4.02151 4.08514 4.16416 4.24401 4.30962 4.33983 4.42595 4.43567 4.47829 4.57559 4.58569 4.67050 4.71945 4.78985 4.92182 5.03317 5.10362 5.15589 5.50858 5.56966 5.88745 5.96095 6.26138 6.28865 6.56308 6.61654 6.72555 7.09678 7.41933 7.90145 8.53202 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.002534 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.456971 B =11048.987435 C =11284.679913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.492 3.508 3 O -0.598 6.598 4 N -0.611 5.611 5 C 0.099 3.901 6 C -0.158 4.158 7 C 0.066 3.934 8 O -0.402 6.402 9 C 0.106 3.894 10 H 0.026 0.974 11 C 0.074 3.926 12 N -0.684 5.684 13 C 0.065 3.935 14 C 0.441 3.559 15 O -0.619 6.619 16 N -0.586 5.586 17 C -0.411 4.411 18 H 0.072 0.928 19 C -0.042 4.042 20 N -0.916 5.916 21 Si 1.137 2.863 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.271 1.271 25 C 0.088 3.912 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.348 0.652 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.385 0.615 41 H 0.260 0.740 42 H 0.102 0.898 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.436 -9.318 16.454 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.283 3.717 3 O -0.479 6.479 4 N -0.344 5.344 5 C -0.021 4.021 6 C -0.196 4.196 7 C -0.010 4.010 8 O -0.321 6.321 9 C 0.045 3.955 10 H 0.044 0.956 11 C -0.055 4.055 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.229 3.771 15 O -0.504 6.504 16 N -0.225 5.225 17 C -0.540 4.540 18 H 0.090 0.910 19 C -0.240 4.240 20 N -0.556 5.556 21 Si 0.956 3.044 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.037 4.037 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.167 0.833 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.220 0.780 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.361 -8.093 14.802 28.011 hybrid contribution -0.651 -0.602 1.550 1.786 sum -23.012 -8.696 16.352 29.539 Atomic orbital electron populations 1.21996 0.88099 1.06013 1.06427 1.21850 0.92719 0.82737 0.74415 1.90726 1.72207 1.33171 1.51810 1.48121 1.06109 1.07459 1.72701 1.22358 0.96125 0.82230 1.01436 1.22442 1.02850 0.98783 0.95547 1.22388 0.81267 0.98521 0.98777 1.86219 1.28467 1.36449 1.80943 1.21789 0.95032 0.85611 0.93037 0.95576 1.21975 0.92659 1.01796 0.89106 1.60027 1.11623 1.47356 1.12695 1.21561 0.89601 1.03302 0.92307 1.20848 0.82101 0.82045 0.92090 1.90495 1.53481 1.56410 1.50061 1.41981 1.07573 1.64998 1.07938 1.20556 0.96349 1.52465 0.84654 0.91024 1.27875 0.91131 0.94078 1.10963 1.70939 1.36225 1.47907 1.00484 0.82588 0.75862 0.78117 0.67802 1.19378 1.20403 1.19608 1.22163 0.80898 1.04108 0.96551 0.86349 0.89698 0.87127 0.89099 0.86901 0.90625 0.86343 0.88423 0.93873 0.92681 0.88991 0.83325 0.91112 0.87632 0.78033 0.92938 0.87941 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 8.66 71.24 0.62 -0.93 16 2 C 0.49 9.90 7.74 87.66 0.68 10.57 16 3 O -0.60 -18.87 16.51 -3.04 -0.05 -18.92 16 4 N -0.61 -9.88 2.19 -817.88 -1.79 -11.67 16 5 C 0.10 0.70 6.00 86.38 0.52 1.22 16 6 C -0.16 -1.37 5.79 30.31 0.18 -1.19 16 7 C 0.07 1.10 6.37 71.50 0.46 1.56 16 8 O -0.40 -9.80 8.97 -117.89 -1.06 -10.85 16 9 C 0.11 2.70 2.88 31.23 0.09 2.79 16 10 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 11 C 0.07 1.98 5.39 86.30 0.46 2.45 16 12 N -0.68 -24.53 6.13 -517.93 -3.17 -27.70 16 13 C 0.06 2.38 6.17 85.56 0.53 2.91 16 14 C 0.44 22.27 7.82 87.66 0.69 22.96 16 15 O -0.62 -36.62 15.78 -3.07 -0.05 -36.67 16 16 N -0.59 -31.09 5.28 -306.98 -1.62 -32.71 16 17 C -0.41 -24.35 9.68 84.04 0.81 -23.54 16 18 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 19 C -0.04 -2.36 5.50 84.93 0.47 -1.90 16 20 N -0.92 -52.28 13.68 21.66 0.30 -51.98 16 21 Si 1.14 49.85 29.92 68.60 2.05 51.90 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.09 1.74 4.87 87.27 0.42 2.16 16 26 H 0.12 0.38 8.04 -2.39 -0.02 0.36 16 27 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 28 H 0.11 0.55 7.41 -2.38 -0.02 0.53 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.11 0.22 5.88 -2.39 -0.01 0.21 16 31 H 0.08 0.80 8.01 -2.39 -0.02 0.78 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 0.78 7.41 -2.39 -0.02 0.76 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 2.33 8.14 -2.38 -0.02 2.32 16 37 H 0.35 13.45 7.99 -89.70 -0.72 12.74 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.39 18.66 6.73 -92.72 -0.62 18.04 16 41 H 0.26 14.33 6.78 -92.70 -0.63 13.71 16 42 H 0.10 1.60 8.11 -2.39 -0.02 1.59 16 43 H 0.08 1.82 7.27 -2.39 -0.02 1.80 16 Total: -1.00 -83.89 350.69 0.35 -83.53 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.17 Total: 36.02 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.92 Total: 19.06 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.29 Total: -124.07 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -1.16 Total: -66.44 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -83.89 0.35 -83.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199600015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.872 kcal (2) G-P(sol) polarization free energy of solvation -83.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds