Wall clock time and date at job start Tue Mar 31 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21287 * 120.00031 * 2 1 4 4 N 1.34776 * 119.99895 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99783 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46978 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00121 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.47503 * 118.75848 * 0.02562 * 8 6 5 10 10 C 1.53573 * 111.03106 * 221.62609 * 9 8 6 11 11 C 1.51534 * 109.58000 * 39.97757 * 10 9 8 12 12 O 1.42158 * 108.76478 * 268.60478 * 11 10 9 13 13 C 1.38013 * 119.44261 * 87.21486 * 12 11 10 14 14 H 1.09006 * 109.46188 * 56.58118 * 13 12 11 15 15 C 1.52992 * 109.47331 * 176.57427 * 13 12 11 16 16 N 1.46498 * 109.47364 * 300.00645 * 15 13 12 17 17 C 1.36935 * 120.00239 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.45128 * 118.76018 * 179.97438 * 8 6 5 26 26 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47243 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.46886 * 60.00041 * 1 2 3 29 29 H 0.96995 * 120.00189 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.47289 * 59.99393 * 5 4 2 31 31 H 1.09000 * 109.47025 * 299.99382 * 5 4 2 32 32 H 1.09000 * 109.17026 * 101.22810 * 9 8 6 33 33 H 1.09007 * 109.16840 * 342.02465 * 9 8 6 34 34 H 1.08996 * 109.45317 * 279.94702 * 10 9 8 35 35 H 1.08998 * 109.43830 * 159.99622 * 10 9 8 36 36 H 1.08997 * 109.59307 * 148.82034 * 11 10 9 37 37 H 1.09005 * 109.59141 * 28.38382 * 11 10 9 38 38 H 1.09001 * 109.47602 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.46922 * 60.00663 * 15 13 12 40 40 H 0.97004 * 119.99747 * 0.02562 * 16 15 13 41 41 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 42 42 H 1.09004 * 109.45500 * 330.69024 * 25 8 6 43 43 H 1.09003 * 109.46183 * 210.73181 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 8 3.3601 -3.5098 -0.0001 8 7 5.4733 -2.8343 -0.0001 9 6 6.4073 -1.6926 0.0005 10 6 7.5856 -1.9441 -0.9518 11 6 7.0843 -2.6171 -2.2135 12 8 7.1621 -4.0261 -2.0420 13 6 6.1065 -4.6981 -1.4598 14 1 5.1947 -4.4998 -2.0233 15 6 6.3930 -6.2009 -1.4658 16 7 6.5625 -6.6603 -2.8465 17 6 6.8292 -7.9790 -3.1015 18 1 6.9143 -8.6805 -2.2847 19 6 6.9903 -8.4142 -4.4097 20 7 6.8813 -7.5603 -5.4055 21 14 7.3535 -10.2132 -4.7577 22 1 8.8230 -10.4272 -4.7744 23 1 6.7426 -11.0554 -3.6981 24 1 6.7838 -10.5871 -6.0771 25 6 5.9273 -4.2127 0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 4.0089 -0.6539 0.8904 31 1 4.0096 -0.6528 -0.8895 32 1 6.7891 -1.5431 1.0104 33 1 5.8760 -0.7953 -0.3168 34 1 8.3165 -2.5880 -0.4628 35 1 8.0535 -0.9937 -1.2087 36 1 7.7037 -2.3170 -3.0587 37 1 6.0491 -2.3278 -2.3954 38 1 5.5592 -6.7317 -1.0064 39 1 7.3049 -6.3991 -0.9024 40 1 6.4864 -6.0302 -3.5801 41 1 6.6923 -6.6262 -5.2249 42 1 5.1897 -4.8377 0.5038 43 1 6.8801 -4.2811 0.5254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199715340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:58 Heat of formation + Delta-G solvation = -94.178384 kcal Electronic energy + Delta-G solvation = -25040.389906 eV Core-core repulsion = 21314.530713 eV Total energy + Delta-G solvation = -3725.859194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96986 -39.76653 -38.60088 -35.90419 -34.94324 -34.73147 -33.07365 -31.07237 -30.83972 -29.21833 -27.38430 -26.51491 -24.64290 -22.76329 -21.90478 -21.14795 -20.94550 -19.52758 -17.98429 -17.31233 -17.07555 -16.65460 -16.55274 -16.37969 -15.97672 -15.66156 -15.07760 -14.60651 -14.25352 -14.08807 -13.81242 -13.66846 -13.42292 -13.20158 -13.03439 -12.95929 -12.77244 -12.54767 -12.33311 -12.10793 -11.71000 -11.48835 -11.12638 -10.67810 -10.50471 -10.40920 -10.32203 -10.14099 -9.97040 -9.56071 -9.55830 -9.16814 -8.83347 -8.73624 -6.92508 -6.03775 -3.02175 2.18145 2.29485 2.41245 3.00855 3.55365 3.60986 3.74776 3.82419 3.97709 4.44268 4.48848 4.57954 4.71030 4.81363 4.83312 4.87262 4.95559 5.05839 5.09762 5.14284 5.22306 5.33415 5.38278 5.45448 5.47322 5.67089 5.70857 5.82162 5.86821 5.91427 5.97976 6.11777 6.28656 6.55760 6.67918 6.93124 7.13140 7.74013 7.83914 7.84389 7.89231 8.83538 9.30892 10.17453 10.33226 11.45282 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.003184 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.195021 B = 8792.928974 C = 9461.977458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.552 6.552 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.502 3.498 7 O -0.530 6.530 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.167 4.167 11 C 0.072 3.928 12 O -0.369 6.369 13 C 0.088 3.912 14 H 0.050 0.950 15 C 0.172 3.828 16 N -0.737 5.737 17 C -0.330 4.330 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.084 2.916 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.081 3.919 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.414 0.586 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.370 0.630 41 H 0.256 0.744 42 H 0.095 0.905 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 17.315 14.093 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.430 6.430 4 N -0.375 5.375 5 C -0.028 4.028 6 C 0.289 3.711 7 O -0.406 6.406 8 N -0.336 5.336 9 C -0.022 4.022 10 C -0.205 4.205 11 C -0.005 4.005 12 O -0.287 6.287 13 C 0.028 3.972 14 H 0.068 0.932 15 C 0.044 3.956 16 N -0.383 5.383 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.591 5.591 21 Si 0.915 3.085 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.042 4.042 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.204 0.796 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.095 16.177 13.038 21.652 hybrid contribution -0.596 1.185 1.222 1.804 sum -6.691 17.362 14.260 23.443 Atomic orbital electron populations 1.21832 0.91020 1.04623 1.05439 1.20863 0.90847 0.82954 0.75231 1.90728 1.70792 1.31404 1.50046 1.45930 1.05954 1.10132 1.75481 1.21140 0.82585 0.94511 1.04608 1.20595 0.82838 0.91103 0.76597 1.90732 1.54635 1.45850 1.49391 1.47888 1.05410 1.07541 1.72788 1.22109 0.91475 0.87912 1.00664 1.22504 0.97960 1.02645 0.97373 1.22145 1.00408 0.81416 0.96488 1.86445 1.42766 1.19109 1.80350 1.22308 0.89924 0.93966 0.91008 0.93221 1.20542 0.98400 0.87338 0.89326 1.42208 1.87285 1.07715 1.01052 1.20061 1.45809 0.85509 0.94717 0.91758 1.25778 1.00775 1.06690 0.91159 1.70822 1.52121 1.03975 1.32149 0.83180 0.76060 0.73911 0.75333 1.22352 1.22177 1.21431 1.22494 1.01381 0.81031 0.99343 0.90259 0.88545 0.88475 0.74806 0.88372 0.88358 0.90865 0.89711 0.89733 0.89347 0.89072 0.93608 0.94711 0.95489 0.79629 0.93312 0.88636 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.39 36.01 0.37 -0.61 16 2 C 0.51 5.04 7.94 -10.99 -0.09 4.95 16 3 O -0.55 -7.45 17.10 5.55 0.09 -7.36 16 4 N -0.72 -6.83 5.53 -61.47 -0.34 -7.17 16 5 C 0.10 0.94 4.49 -5.19 -0.02 0.91 16 6 C 0.50 5.98 7.70 -10.99 -0.08 5.89 16 7 O -0.53 -8.06 15.10 5.55 0.08 -7.97 16 8 N -0.60 -6.73 2.19 -172.40 -0.38 -7.11 16 9 C 0.10 0.80 6.00 -3.20 -0.02 0.78 16 10 C -0.17 -1.48 5.79 -27.18 -0.16 -1.64 16 11 C 0.07 0.91 6.37 36.42 0.23 1.14 16 12 O -0.37 -6.38 9.18 -26.53 -0.24 -6.62 16 13 C 0.09 1.53 2.74 -25.73 -0.07 1.46 16 14 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.17 3.67 5.95 -4.05 -0.02 3.64 16 16 N -0.74 -19.71 5.49 -59.91 -0.33 -20.04 16 17 C -0.33 -9.71 9.99 -15.06 -0.15 -9.86 16 18 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16 19 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 20 N -0.94 -30.23 13.70 55.49 0.76 -29.47 16 21 Si 1.08 26.68 29.92 -169.99 -5.09 21.60 16 22 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.08 1.09 4.87 -3.77 -0.02 1.07 16 26 H 0.08 0.33 7.91 -51.93 -0.41 -0.08 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.41 3.77 7.27 -40.82 -0.30 3.47 16 30 H 0.10 0.81 8.04 -51.93 -0.42 0.39 16 31 H 0.10 0.88 7.41 -51.93 -0.38 0.50 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.53 5.88 -51.93 -0.31 0.22 16 34 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.37 10.28 6.36 -40.82 -0.26 10.02 16 41 H 0.26 8.12 6.77 -40.82 -0.28 7.85 16 42 H 0.10 1.37 7.27 -51.93 -0.38 0.99 16 43 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -37.58 350.66 -6.82 -44.40 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.54 Total: 8.24 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.12 Total: 6.23 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.29 Total: -63.79 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -5.09 Total: 21.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.58 -6.82 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199715340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.781 kcal (2) G-P(sol) polarization free energy of solvation -37.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds