Wall clock time and date at job start Tue Mar 31 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00091 * 2 1 4 4 C 1.50702 * 109.47236 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99544 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00033 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00133 * 0.02562 * 6 4 3 8 8 C 1.46499 * 120.00143 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47247 * 270.00157 * 8 6 4 10 10 H 1.08997 * 112.74433 * 284.22473 * 9 8 6 11 11 C 1.53512 * 113.47599 * 153.38189 * 9 8 6 12 12 C 1.53513 * 83.57401 * 219.21297 * 11 9 8 13 13 N 1.47473 * 113.47672 * 54.99920 * 9 8 6 14 14 C 1.46902 * 110.99939 * 253.47210 * 13 9 8 15 15 C 1.50706 * 109.46971 * 169.99979 * 14 13 9 16 16 O 1.21290 * 119.99841 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99701 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99872 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99710 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99814 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99693 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00141 * 359.73267 * 20 18 17 23 23 H 1.48502 * 109.46967 * 270.27331 * 22 20 18 24 24 H 1.48505 * 109.47170 * 30.26803 * 22 20 18 25 25 H 1.48498 * 109.47513 * 150.27417 * 22 20 18 26 26 H 1.08991 * 109.47005 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46766 * 299.99862 * 1 2 3 28 28 H 1.09003 * 109.46908 * 59.99805 * 1 2 3 29 29 H 1.09000 * 109.46735 * 59.99882 * 3 2 1 30 30 H 1.08998 * 109.47129 * 300.00226 * 3 2 1 31 31 H 1.09003 * 109.46990 * 269.99922 * 7 6 4 32 32 H 1.08995 * 109.47185 * 29.99620 * 7 6 4 33 33 H 1.09008 * 109.47489 * 149.99946 * 7 6 4 34 34 H 1.09002 * 109.47236 * 150.00208 * 8 6 4 35 35 H 1.09003 * 109.47238 * 30.00353 * 8 6 4 36 36 H 1.09010 * 114.16673 * 332.85079 * 11 9 8 37 37 H 1.08992 * 114.17713 * 105.37100 * 11 9 8 38 38 H 1.09011 * 113.46949 * 271.25512 * 12 11 9 39 39 H 1.08996 * 113.47834 * 140.79273 * 12 11 9 40 40 H 1.08991 * 109.47190 * 49.99937 * 14 13 9 41 41 H 1.09001 * 109.46767 * 289.99583 * 14 13 9 42 42 H 0.97004 * 120.00018 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99859 * 179.72933 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0915 -0.0015 6 7 4.2765 2.2968 -0.0002 7 6 3.6465 3.6194 0.0014 8 6 5.7369 2.1811 -0.0003 9 6 6.2454 2.1403 1.4422 10 1 6.2302 3.1187 1.9222 11 6 7.5819 1.4015 1.5988 12 6 6.9395 0.8694 2.8875 13 7 5.6239 1.0777 2.2543 14 6 4.6622 1.6409 3.2113 15 6 3.8735 0.5248 3.8466 16 8 4.0916 -0.6265 3.5334 17 7 2.9267 0.8060 4.7636 18 6 2.2088 -0.2092 5.3412 19 1 2.4024 -1.2343 5.0617 20 6 1.2330 0.0807 6.2870 21 7 0.5453 -0.8925 6.8410 22 14 0.9044 1.8530 6.7769 23 1 1.7777 2.2205 7.9204 24 1 1.1934 2.7464 5.6263 25 1 -0.5190 2.0013 7.1735 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.4895 3.9483 -1.0259 32 1 2.6872 3.5642 0.5158 33 1 4.2941 4.3298 0.5154 34 1 6.1694 3.0399 -0.5138 35 1 6.0289 1.2654 -0.5145 36 1 7.7613 0.6382 0.8415 37 1 8.4378 2.0567 1.7607 38 1 7.1104 1.5086 3.7538 39 1 7.1655 -0.1784 3.0848 40 1 3.9827 2.3147 2.6895 41 1 5.1986 2.1921 3.9836 42 1 2.7526 1.7268 5.0143 43 1 -0.1332 -0.6905 7.5041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230539089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:48 Heat of formation + Delta-G solvation = -48.900106 kcal Electronic energy + Delta-G solvation = -26144.436628 eV Core-core repulsion = 22420.540848 eV Total energy + Delta-G solvation = -3723.895780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51388 -39.18857 -37.81648 -37.14741 -35.22661 -33.82512 -31.61605 -30.94950 -29.77156 -28.01786 -26.48210 -25.82702 -25.51141 -23.45565 -23.03193 -19.65029 -19.33239 -19.15812 -18.25460 -17.16365 -16.54955 -16.36073 -15.84828 -15.73834 -15.47001 -15.16935 -14.76948 -14.49185 -14.30245 -13.88755 -13.45590 -13.15698 -13.03672 -12.76760 -12.64792 -12.52715 -12.43743 -12.11493 -12.07323 -11.60111 -11.52983 -11.29077 -11.23257 -11.08827 -10.82469 -10.56574 -10.49011 -9.89035 -9.59986 -9.45881 -9.32986 -8.83135 -8.39505 -8.12801 -8.06573 -6.21613 -3.71835 2.81916 3.00765 3.03060 3.08624 3.16294 3.88114 3.96364 4.14156 4.16476 4.51701 4.71791 4.79323 4.89814 4.93779 5.08396 5.08969 5.21224 5.22164 5.27362 5.32808 5.40450 5.42725 5.48711 5.51270 5.58422 5.60748 5.65773 5.76975 5.87246 5.91403 5.99062 6.08820 6.26932 6.49363 6.69846 7.14808 7.27665 7.52205 7.68747 8.26316 8.54624 8.72057 9.07382 9.53317 9.98816 10.92298 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.006026 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.995012 B = 4645.258670 C = 5814.360153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.047 3.953 4 C 0.512 3.488 5 O -0.472 6.472 6 N -0.623 5.623 7 C 0.077 3.923 8 C 0.140 3.860 9 C 0.000 4.000 10 H 0.072 0.928 11 C -0.134 4.134 12 C 0.001 3.999 13 N -0.413 5.413 14 C 0.009 3.991 15 C 0.458 3.542 16 O -0.539 6.539 17 N -0.601 5.601 18 C -0.296 4.296 19 H 0.119 0.881 20 C 0.038 3.962 21 N -0.886 5.886 22 Si 0.878 3.122 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.278 1.278 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.366 0.634 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 15.734 -14.013 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.033 4.033 4 C 0.298 3.702 5 O -0.341 6.341 6 N -0.361 5.361 7 C -0.067 4.067 8 C 0.017 3.983 9 C -0.111 4.111 10 H 0.090 0.910 11 C -0.172 4.172 12 C -0.128 4.128 13 N -0.135 5.135 14 C -0.124 4.124 15 C 0.243 3.757 16 O -0.418 6.418 17 N -0.243 5.243 18 C -0.425 4.425 19 H 0.136 0.864 20 C -0.163 4.163 21 N -0.527 5.527 22 Si 0.705 3.295 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.203 1.203 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.198 0.802 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.880 13.477 -14.390 20.881 hybrid contribution -0.552 2.683 1.237 3.006 sum 6.328 16.160 -13.153 21.776 Atomic orbital electron populations 1.22813 0.80620 1.03408 0.99642 1.88082 1.19546 1.24717 1.95229 1.22230 0.92365 0.87265 1.01431 1.20071 0.88285 0.84432 0.77450 1.90795 1.73794 1.25468 1.44065 1.47627 1.06309 1.05702 1.76457 1.21785 0.98801 0.84554 1.01518 1.21377 0.79025 1.02883 0.95007 1.23918 0.95043 0.95465 0.96685 0.90981 1.23135 0.95225 0.99875 0.98995 1.23770 0.90514 1.02924 0.95571 1.68946 1.04305 1.26610 1.13647 1.22527 0.97311 0.96790 0.95740 1.19577 0.83377 0.89973 0.82768 1.90611 1.67779 1.20963 1.62436 1.42217 1.35100 1.08103 1.38834 1.19431 1.13926 0.90447 1.18682 0.86369 1.24997 0.96700 0.97547 0.97100 1.69627 1.23845 1.31100 1.28167 0.86706 0.78827 0.84891 0.79086 1.19801 1.19816 1.20297 0.89066 0.93602 0.94450 0.90858 0.91252 0.92689 0.91370 0.91184 0.90596 0.89202 0.88660 0.90887 0.91898 0.89323 0.90343 0.92776 0.80180 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.65 10.24 -55.14 -0.56 -7.22 16 3 C 0.05 0.70 4.97 36.01 0.18 0.88 16 4 C 0.51 8.67 7.23 -10.99 -0.08 8.59 16 5 O -0.47 -10.51 15.51 -14.35 -0.22 -10.73 16 6 N -0.62 -7.70 2.63 -181.57 -0.48 -8.18 16 7 C 0.08 0.60 10.24 59.85 0.61 1.22 16 8 C 0.14 1.59 5.58 -4.04 -0.02 1.57 16 9 C 0.00 0.00 3.35 -71.44 -0.24 -0.24 16 10 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 11 C -0.13 -1.50 8.00 -26.20 -0.21 -1.71 16 12 C 0.00 0.02 7.71 -7.55 -0.06 -0.04 16 13 N -0.41 -7.20 4.42 -237.96 -1.05 -8.25 16 14 C 0.01 0.16 5.30 -4.97 -0.03 0.13 16 15 C 0.46 11.30 7.85 -10.98 -0.09 11.22 16 16 O -0.54 -16.04 16.01 5.55 0.09 -15.95 16 17 N -0.60 -15.10 5.09 -10.96 -0.06 -15.16 16 18 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 19 H 0.12 4.03 7.39 -52.49 -0.39 3.64 16 20 C 0.04 1.08 5.50 -17.47 -0.10 0.99 16 21 N -0.89 -26.65 13.96 55.50 0.77 -25.87 16 22 Si 0.88 19.82 27.74 -169.99 -4.71 15.10 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.03 7.40 -51.93 -0.38 0.64 16 30 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 33 H 0.07 0.43 8.07 -51.92 -0.42 0.02 16 34 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.09 1.22 7.15 -51.93 -0.37 0.84 16 36 H 0.09 1.11 7.94 -51.92 -0.41 0.70 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.85 7.42 -51.92 -0.39 0.46 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 41 H 0.05 0.86 7.30 -51.93 -0.38 0.48 16 42 H 0.37 8.04 5.76 -40.82 -0.24 7.81 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -39.89 357.23 -6.58 -46.46 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.67 Total: 9.14 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.27 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.81 Total: -57.46 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.70 Total: -33.89 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.89 -6.58 -46.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230539089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.436 kcal (2) G-P(sol) polarization free energy of solvation -39.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds