Wall clock time and date at job start Tue Mar 31 2020 03:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00316 * 2 1 4 4 O 1.21284 * 119.99864 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00354 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.55500 * 54.86668 * 5 3 2 7 7 C 1.52882 * 109.58163 * 294.88346 * 5 3 2 8 8 N 1.47156 * 108.60642 * 187.92445 * 7 5 3 9 9 C 1.34777 * 120.97634 * 230.49781 * 8 7 5 10 10 O 1.21279 * 120.00360 * 359.71376 * 9 8 7 11 11 C 1.50701 * 119.99635 * 179.71797 * 9 8 7 12 12 H 1.08997 * 109.47189 * 39.99855 * 11 9 8 13 13 N 1.46901 * 109.47022 * 159.99794 * 11 9 8 14 14 C 1.52995 * 109.47135 * 279.99788 * 11 9 8 15 15 C 1.53007 * 109.47329 * 175.00172 * 14 11 9 16 16 C 1.50697 * 109.46894 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.47146 * 118.03612 * 50.22287 * 8 7 5 25 25 C 1.53297 * 108.38791 * 309.71547 * 24 8 7 26 26 O 1.42957 * 109.51566 * 174.99853 * 5 3 2 27 27 H 1.09001 * 109.47091 * 300.00406 * 1 2 3 28 28 H 1.09000 * 109.46651 * 60.00332 * 1 2 3 29 29 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.08991 * 109.62167 * 68.09739 * 7 5 3 32 32 H 1.09006 * 109.51785 * 307.68341 * 7 5 3 33 33 H 1.00893 * 111.00361 * 296.04616 * 13 11 9 34 34 H 1.00905 * 110.99921 * 60.00304 * 13 11 9 35 35 H 1.09000 * 109.47250 * 55.00136 * 14 11 9 36 36 H 1.08999 * 109.47531 * 294.99924 * 14 11 9 37 37 H 1.08995 * 109.46729 * 60.00173 * 15 14 11 38 38 H 1.09007 * 109.46460 * 300.00028 * 15 14 11 39 39 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.68398 * 69.44134 * 24 8 7 41 41 H 1.09002 * 109.67878 * 189.95449 * 24 8 7 42 42 H 1.08997 * 109.51331 * 172.22607 * 25 24 8 43 43 H 1.09003 * 109.51072 * 292.38322 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0111 0.5759 -0.8392 7 6 4.1578 0.5614 1.3076 8 7 5.6166 0.7445 1.3704 9 6 6.4346 -0.2912 1.6437 10 8 5.9706 -1.3931 1.8475 11 6 7.9258 -0.0800 1.6963 12 1 8.1412 0.8700 2.1852 13 7 8.5487 -1.1732 2.4544 14 6 8.4885 -0.0606 0.2737 15 6 9.9801 0.2774 0.3198 16 6 10.5342 0.2972 -1.0815 17 1 9.8872 0.0899 -1.9211 18 6 11.8669 0.5810 -1.2918 19 7 12.3507 0.5978 -2.5147 20 14 12.9859 0.9403 0.1602 21 1 12.9762 2.3980 0.4437 22 1 12.5013 0.2009 1.3534 23 1 14.3694 0.5078 -0.1621 24 6 6.1561 2.0903 1.1198 25 6 5.5473 2.6205 -0.1834 26 8 4.1235 2.5094 -0.1170 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9196 -0.5018 1.3362 32 1 3.6878 1.0662 2.1517 33 1 8.2418 -1.1676 3.4155 34 1 8.3634 -2.0654 2.0209 35 1 7.9635 0.6921 -0.3145 36 1 8.3521 -1.0401 -0.1845 37 1 10.5051 -0.4752 0.9079 38 1 10.1166 1.2571 0.7780 39 1 13.2884 0.7971 -2.6625 40 1 5.8908 2.7516 1.9446 41 1 7.2408 2.0391 1.0247 42 1 5.8251 3.6660 -0.3162 43 1 5.9193 2.0345 -1.0238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261425366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:28 Heat of formation + Delta-G solvation = -110.455618 kcal Electronic energy + Delta-G solvation = -25200.571801 eV Core-core repulsion = 21474.006773 eV Total energy + Delta-G solvation = -3726.565028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96448 -39.81248 -38.31799 -35.59455 -35.17878 -34.76278 -32.85640 -32.15830 -30.58473 -28.73859 -27.63122 -26.37017 -24.87549 -23.56125 -22.29877 -20.81255 -20.32871 -19.25783 -18.12393 -17.33674 -17.20179 -16.78827 -16.44519 -15.80703 -15.66955 -15.63901 -15.20604 -14.88359 -14.68259 -14.29322 -14.17974 -13.71416 -13.46330 -13.27503 -12.96520 -12.67674 -12.64000 -12.50845 -12.32377 -11.91677 -11.72440 -11.15021 -11.09283 -10.94047 -10.58939 -10.38047 -10.13203 -10.00375 -9.83961 -9.65786 -9.54611 -9.17863 -8.84161 -8.57990 -8.48657 -6.04537 -4.02876 2.16396 2.44948 2.51668 2.68657 3.32009 3.40655 3.47656 3.67230 4.23566 4.37971 4.41144 4.46777 4.58896 4.71796 4.77083 4.84611 4.93814 5.05111 5.12603 5.15747 5.25748 5.31514 5.32698 5.41157 5.51452 5.53234 5.61966 5.94372 6.06748 6.17757 6.35969 6.66437 6.75526 7.04230 7.05072 7.23573 7.28227 7.50528 7.56390 7.80261 7.82260 7.98010 8.51640 8.99473 9.58208 11.08782 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.003450 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.559754 B = 8113.847227 C = 8652.778865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.524 3.476 4 O -0.513 6.513 5 C 0.061 3.939 6 H 0.091 0.909 7 C 0.089 3.911 8 N -0.614 5.614 9 C 0.490 3.510 10 O -0.549 6.549 11 C 0.074 3.926 12 H 0.100 0.900 13 N -0.809 5.809 14 C -0.089 4.089 15 C -0.004 4.004 16 C -0.523 4.523 17 H 0.069 0.931 18 C 0.067 3.933 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.260 1.260 23 H -0.290 1.290 24 C 0.065 3.935 25 C 0.045 3.955 26 O -0.351 6.351 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.405 0.595 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.336 0.664 34 H 0.350 0.650 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.794 -0.296 8.432 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.308 3.692 4 O -0.387 6.387 5 C -0.002 4.002 6 H 0.109 0.891 7 C -0.035 4.035 8 N -0.349 5.349 9 C 0.278 3.722 10 O -0.426 6.426 11 C -0.041 4.041 12 H 0.118 0.882 13 N -0.338 5.338 14 C -0.127 4.127 15 C -0.041 4.041 16 C -0.561 4.561 17 H 0.087 0.913 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.184 1.184 23 H -0.216 1.216 24 C -0.058 4.058 25 C -0.032 4.032 26 O -0.269 6.269 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.239 0.761 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.730 0.427 8.273 21.399 hybrid contribution 0.043 -0.676 0.711 0.982 sum -19.687 -0.249 8.984 21.641 Atomic orbital electron populations 1.21567 0.78837 1.02522 1.02552 1.45719 1.08078 1.08451 1.76511 1.20014 0.88624 0.84054 0.76504 1.90741 1.69672 1.31094 1.47154 1.22167 0.91967 0.86961 0.99093 0.89131 1.21978 0.81800 1.02987 0.96726 1.48266 1.05743 1.09824 1.71064 1.22763 0.91406 0.83524 0.74520 1.90643 1.77745 1.24087 1.50133 1.21921 0.85225 0.97323 0.99671 0.88209 1.59033 1.62075 1.07080 1.05568 1.21531 0.99657 1.01827 0.89714 1.19488 0.90462 0.96401 0.97763 1.21144 0.95100 1.47968 0.91893 0.91316 1.25012 0.98103 0.94774 0.95531 1.69919 1.14506 1.49800 1.20173 0.86787 0.79899 0.78861 0.83875 1.20453 1.18409 1.21588 1.22656 1.01308 0.83031 0.98807 1.23154 0.79930 1.03566 0.96549 1.88079 1.21454 1.23027 1.94333 0.92022 0.91998 0.90307 0.76131 0.87834 0.90371 0.85204 0.83545 0.92196 0.92059 0.94707 0.97336 0.92775 0.90124 0.86987 0.86383 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.73 -5.70 5.68 -67.08 -0.38 -6.09 16 3 C 0.52 6.00 7.18 -10.99 -0.08 5.92 16 4 O -0.51 -7.99 16.51 -14.28 -0.24 -8.22 16 5 C 0.06 0.67 3.18 -27.94 -0.09 0.58 16 6 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.09 0.95 5.86 -3.74 -0.02 0.93 16 8 N -0.61 -7.31 3.03 -172.53 -0.52 -7.83 16 9 C 0.49 6.92 6.95 -10.98 -0.08 6.84 16 10 O -0.55 -8.92 15.72 5.56 0.09 -8.84 16 11 C 0.07 1.09 2.29 -68.87 -0.16 0.93 16 12 H 0.10 1.33 6.88 -51.93 -0.36 0.97 16 13 N -0.81 -11.90 8.44 -5.66 -0.05 -11.95 16 14 C -0.09 -1.59 4.45 -26.73 -0.12 -1.71 16 15 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 16 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 17 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 20 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.06 0.67 6.01 -3.54 -0.02 0.65 16 25 C 0.05 0.48 6.99 37.31 0.26 0.74 16 26 O -0.35 -4.49 9.92 -55.06 -0.55 -5.03 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.40 2.18 8.83 -40.82 -0.36 1.82 16 31 H 0.10 1.06 7.08 -51.93 -0.37 0.69 16 32 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.34 4.24 9.06 -39.30 -0.36 3.88 16 34 H 0.35 5.25 8.58 -39.29 -0.34 4.92 16 35 H 0.06 1.01 6.92 -51.93 -0.36 0.65 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 38 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.11 1.18 4.87 -51.93 -0.25 0.93 16 42 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -35.67 350.32 -6.99 -42.66 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.53 Total: 7.05 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.20 Total: 3.05 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.18 Total: -52.57 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.69 Total: -22.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.67 -6.99 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261425366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.794 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds