Wall clock time and date at job start Tue Mar 31 2020 03:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00316 * 2 1 4 4 O 1.21284 * 119.99864 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00354 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.55500 * 54.86668 * 5 3 2 7 7 C 1.52882 * 109.58163 * 294.88346 * 5 3 2 8 8 N 1.47156 * 108.60642 * 187.92445 * 7 5 3 9 9 C 1.34777 * 120.97634 * 230.49781 * 8 7 5 10 10 O 1.21279 * 120.00360 * 359.71376 * 9 8 7 11 11 C 1.50701 * 119.99635 * 179.71797 * 9 8 7 12 12 H 1.08997 * 109.47189 * 39.99855 * 11 9 8 13 13 N 1.46901 * 109.47022 * 159.99794 * 11 9 8 14 14 C 1.52995 * 109.47135 * 279.99788 * 11 9 8 15 15 C 1.53007 * 109.47329 * 175.00172 * 14 11 9 16 16 C 1.50697 * 109.46894 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.47146 * 118.03612 * 50.22287 * 8 7 5 25 25 C 1.53297 * 108.38791 * 309.71547 * 24 8 7 26 26 O 1.42957 * 109.51566 * 174.99853 * 5 3 2 27 27 H 1.09001 * 109.47091 * 300.00406 * 1 2 3 28 28 H 1.09000 * 109.46651 * 60.00332 * 1 2 3 29 29 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.08991 * 109.62167 * 68.09739 * 7 5 3 32 32 H 1.09006 * 109.51785 * 307.68341 * 7 5 3 33 33 H 1.00893 * 111.00361 * 296.04616 * 13 11 9 34 34 H 1.00905 * 110.99921 * 60.00304 * 13 11 9 35 35 H 1.09000 * 109.47250 * 55.00136 * 14 11 9 36 36 H 1.08999 * 109.47531 * 294.99924 * 14 11 9 37 37 H 1.08995 * 109.46729 * 60.00173 * 15 14 11 38 38 H 1.09007 * 109.46460 * 300.00028 * 15 14 11 39 39 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.68398 * 69.44134 * 24 8 7 41 41 H 1.09002 * 109.67878 * 189.95449 * 24 8 7 42 42 H 1.08997 * 109.51331 * 172.22607 * 25 24 8 43 43 H 1.09003 * 109.51072 * 292.38322 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0111 0.5759 -0.8392 7 6 4.1578 0.5614 1.3076 8 7 5.6166 0.7445 1.3704 9 6 6.4346 -0.2912 1.6437 10 8 5.9706 -1.3931 1.8475 11 6 7.9258 -0.0800 1.6963 12 1 8.1412 0.8700 2.1852 13 7 8.5487 -1.1732 2.4544 14 6 8.4885 -0.0606 0.2737 15 6 9.9801 0.2774 0.3198 16 6 10.5342 0.2972 -1.0815 17 1 9.8872 0.0899 -1.9211 18 6 11.8669 0.5810 -1.2918 19 7 12.3507 0.5978 -2.5147 20 14 12.9859 0.9403 0.1602 21 1 12.9762 2.3980 0.4437 22 1 12.5013 0.2009 1.3534 23 1 14.3694 0.5078 -0.1621 24 6 6.1561 2.0903 1.1198 25 6 5.5473 2.6205 -0.1834 26 8 4.1235 2.5094 -0.1170 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9196 -0.5018 1.3362 32 1 3.6878 1.0662 2.1517 33 1 8.2418 -1.1676 3.4155 34 1 8.3634 -2.0654 2.0209 35 1 7.9635 0.6921 -0.3145 36 1 8.3521 -1.0401 -0.1845 37 1 10.5051 -0.4752 0.9079 38 1 10.1166 1.2571 0.7780 39 1 13.2884 0.7971 -2.6625 40 1 5.8908 2.7516 1.9446 41 1 7.2408 2.0391 1.0247 42 1 5.8251 3.6660 -0.3162 43 1 5.9193 2.0345 -1.0238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261425366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:27 Heat of formation + Delta-G solvation = -139.907712 kcal Electronic energy + Delta-G solvation = -25201.848939 eV Core-core repulsion = 21474.006773 eV Total energy + Delta-G solvation = -3727.842166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93086 -40.79925 -39.27297 -36.97126 -36.09185 -35.64990 -34.79170 -33.02259 -32.28743 -29.64804 -28.78028 -27.50967 -25.88284 -24.81997 -23.38207 -21.96963 -21.64170 -20.29642 -19.15423 -18.74866 -18.28058 -18.06575 -17.44491 -16.95230 -16.71835 -16.47901 -16.24445 -16.11734 -15.71697 -15.53962 -15.31574 -14.98164 -14.71396 -14.43611 -14.11770 -13.99501 -13.80511 -13.50735 -13.24043 -13.13477 -12.79541 -12.72996 -12.49929 -12.10800 -11.89763 -11.73604 -11.58433 -11.45104 -11.23261 -11.16435 -11.01892 -10.68517 -10.28074 -9.79756 -9.68245 -8.22560 -6.25627 1.23829 1.41103 1.42194 1.46177 1.59194 1.71328 1.74471 2.43693 2.88738 3.14599 3.30641 3.44115 3.58020 3.64611 3.74324 3.87494 4.02766 4.10510 4.20920 4.22977 4.32311 4.42766 4.48835 4.59164 4.66935 4.71558 4.81098 4.83894 4.91482 5.13791 5.17846 5.26601 5.51759 5.66964 5.76218 5.83308 5.99371 6.17363 6.34515 6.35563 6.49190 6.83481 6.90274 7.03699 7.39232 8.94138 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.003450 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.559754 B = 8113.847227 C = 8652.778865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.523 3.477 4 O -0.561 6.561 5 C 0.062 3.938 6 H 0.098 0.902 7 C 0.093 3.907 8 N -0.609 5.609 9 C 0.493 3.507 10 O -0.572 6.572 11 C 0.083 3.917 12 H 0.121 0.879 13 N -0.818 5.818 14 C -0.080 4.080 15 C 0.002 3.998 16 C -0.528 4.528 17 H 0.030 0.970 18 C 0.003 3.997 19 N -0.956 5.956 20 Si 0.949 3.051 21 H -0.264 1.264 22 H -0.243 1.243 23 H -0.293 1.293 24 C 0.063 3.937 25 C 0.043 3.957 26 O -0.372 6.372 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.418 0.582 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.349 0.651 34 H 0.347 0.653 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -0.174 10.594 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.308 3.692 4 O -0.439 6.439 5 C 0.000 4.000 6 H 0.116 0.884 7 C -0.030 4.030 8 N -0.343 5.343 9 C 0.281 3.719 10 O -0.451 6.451 11 C -0.033 4.033 12 H 0.139 0.861 13 N -0.347 5.347 14 C -0.118 4.118 15 C -0.035 4.035 16 C -0.566 4.566 17 H 0.048 0.952 18 C -0.193 4.193 19 N -0.597 5.597 20 Si 0.772 3.228 21 H -0.189 1.189 22 H -0.167 1.167 23 H -0.219 1.219 24 C -0.059 4.059 25 C -0.033 4.033 26 O -0.290 6.290 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.180 0.524 10.450 22.731 hybrid contribution 0.091 -0.757 -0.058 0.765 sum -20.089 -0.233 10.393 22.619 Atomic orbital electron populations 1.21753 0.77678 1.04661 1.01844 1.45693 1.08887 1.08027 1.74488 1.20159 0.88800 0.84277 0.76013 1.90717 1.70459 1.32849 1.49846 1.22211 0.91783 0.86527 0.99471 0.88450 1.22010 0.80945 1.03367 0.96690 1.48274 1.06175 1.09976 1.69877 1.22516 0.91256 0.83527 0.74595 1.90637 1.78011 1.25035 1.51422 1.21732 0.85569 0.98384 0.97581 0.86146 1.59027 1.62305 1.06901 1.06447 1.21306 0.97250 1.00988 0.92244 1.19373 0.92915 0.96949 0.94264 1.21543 0.94833 1.46729 0.93501 0.95187 1.25986 1.00042 0.94836 0.98434 1.70081 1.15023 1.51764 1.22809 0.85675 0.77181 0.79510 0.80391 1.18889 1.16658 1.21918 1.22793 1.01285 0.82403 0.99386 1.23278 0.79049 1.04650 0.96368 1.88067 1.22525 1.23997 1.94423 0.92630 0.92853 0.86734 0.74527 0.87247 0.89901 0.83716 0.83911 0.91339 0.93923 0.95298 0.95748 0.92745 0.88232 0.86847 0.84586 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.70 127.77 1.37 2.30 16 2 N -0.72 -10.09 5.68 -484.53 -2.75 -12.85 16 3 C 0.52 11.60 7.18 87.66 0.63 12.23 16 4 O -0.56 -17.52 16.51 15.92 0.26 -17.25 16 5 C 0.06 1.30 3.18 29.81 0.09 1.39 16 6 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 7 C 0.09 1.83 5.86 86.21 0.51 2.33 16 8 N -0.61 -13.19 3.03 -818.16 -2.48 -15.66 16 9 C 0.49 12.90 6.95 87.66 0.61 13.50 16 10 O -0.57 -17.58 15.72 -3.02 -0.05 -17.63 16 11 C 0.08 2.23 2.29 44.17 0.10 2.33 16 12 H 0.12 2.78 6.88 -2.39 -0.02 2.76 16 13 N -0.82 -22.25 8.44 -171.81 -1.45 -23.70 16 14 C -0.08 -2.74 4.45 30.60 0.14 -2.61 16 15 C 0.00 0.11 3.93 29.85 0.12 0.22 16 16 C -0.53 -29.14 9.66 25.60 0.25 -28.89 16 17 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 18 C 0.00 0.18 5.47 84.65 0.46 0.65 16 19 N -0.96 -59.20 13.96 21.45 0.30 -58.91 16 20 Si 0.95 43.23 27.47 68.60 1.88 45.11 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.06 1.17 6.01 86.36 0.52 1.68 16 25 C 0.04 0.85 6.99 72.08 0.50 1.35 16 26 O -0.37 -9.13 9.92 -130.02 -1.29 -10.42 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.42 3.64 8.83 -92.70 -0.82 2.82 16 31 H 0.11 2.02 7.08 -2.39 -0.02 2.01 16 32 H 0.08 1.58 8.13 -2.38 -0.02 1.56 16 33 H 0.35 7.92 9.06 -89.70 -0.81 7.10 16 34 H 0.35 9.91 8.58 -89.69 -0.77 9.14 16 35 H 0.07 2.22 6.92 -2.39 -0.02 2.20 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.03 1.29 6.81 -2.39 -0.02 1.27 16 38 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 2.07 4.87 -2.39 -0.01 2.06 16 42 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.85 350.32 -1.67 -79.53 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -1.40 Total: 25.29 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.29 Total: 6.49 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -6.38 Total: -111.11 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.08 Total: -45.30 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -77.85 -1.67 -79.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261425366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.382 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds