Wall clock time and date at job start Tue Mar 31 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 N 1.46501 * 109.46648 * 119.99286 * 2 1 3 5 5 C 1.34773 * 120.00247 * 274.99658 * 4 2 1 6 6 O 1.21595 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00400 * 180.02562 * 5 4 2 8 8 C 1.47023 * 125.64355 * 359.69447 * 7 5 4 9 9 C 1.54338 * 107.26459 * 178.85010 * 8 7 5 10 10 C 1.55150 * 103.02107 * 338.14059 * 9 8 7 11 11 O 1.42899 * 111.00956 * 277.23577 * 10 9 8 12 12 C 1.50695 * 111.04006 * 153.39360 * 10 9 8 13 13 H 1.08002 * 120.00352 * 273.60439 * 12 10 9 14 14 C 1.37885 * 119.99806 * 93.59868 * 12 10 9 15 15 N 1.31521 * 119.99806 * 177.99881 * 14 12 10 16 16 Si 1.86794 * 119.99977 * 357.99766 * 14 12 10 17 17 H 1.48497 * 109.47217 * 95.44047 * 16 14 12 18 18 H 1.48503 * 109.46718 * 215.43941 * 16 14 12 19 19 H 1.48499 * 109.47084 * 335.43433 * 16 14 12 20 20 C 1.47417 * 125.65138 * 180.02562 * 7 5 4 21 21 C 1.50698 * 109.47312 * 239.99477 * 2 1 3 22 22 O 1.21281 * 119.99657 * 255.41947 * 21 2 1 23 23 N 1.34780 * 119.99913 * 75.42269 * 21 2 1 24 24 C 1.46494 * 119.99620 * 183.42892 * 23 21 2 25 25 C 1.46498 * 119.99848 * 3.43181 * 23 21 2 26 26 H 1.09001 * 109.47278 * 56.77888 * 1 2 3 27 27 H 1.08997 * 109.47110 * 176.78060 * 1 2 3 28 28 H 1.09001 * 109.47544 * 296.77937 * 1 2 3 29 29 H 0.97002 * 120.00041 * 95.00495 * 4 2 1 30 30 H 1.08999 * 109.88855 * 298.39599 * 8 7 5 31 31 H 1.09001 * 109.88365 * 59.56356 * 8 7 5 32 32 H 1.09007 * 110.84652 * 219.67673 * 9 8 7 33 33 H 1.08999 * 110.51810 * 96.45468 * 9 8 7 34 34 H 0.96699 * 114.00721 * 176.55896 * 11 10 9 35 35 H 0.97001 * 119.99888 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.36859 * 322.92502 * 20 7 5 37 37 H 1.08999 * 110.37202 * 85.14752 * 20 7 5 38 38 H 1.08996 * 109.47730 * 359.97438 * 24 23 21 39 39 H 1.09000 * 109.47089 * 120.00635 * 24 23 21 40 40 H 1.09007 * 109.46945 * 239.99813 * 24 23 21 41 41 H 1.08995 * 109.47364 * 84.39896 * 25 23 21 42 42 H 1.09000 * 109.46830 * 204.39748 * 25 23 21 43 43 H 1.09000 * 109.46919 * 324.39451 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1617 2.4118 7 7 2.5966 -0.6531 3.4576 8 6 2.9748 -2.0718 3.5337 9 6 3.4535 -2.3416 4.9759 10 6 3.8454 -0.9290 5.4841 11 8 5.1645 -0.5796 5.0600 12 6 3.7219 -0.8399 6.9834 13 1 2.7733 -0.5858 7.4330 14 6 4.8199 -1.0829 7.7812 15 7 4.7221 -0.9667 9.0876 16 14 6.4462 -1.5771 7.0066 17 1 7.2965 -0.3726 6.8296 18 1 7.1406 -2.5478 7.8903 19 1 6.1944 -2.2040 5.6842 20 6 2.7841 -0.0420 4.7860 21 6 2.0324 -0.7105 -1.2304 22 8 2.4838 -1.8326 -1.1407 23 7 1.9800 -0.0989 -2.4303 24 6 2.3983 -0.8166 -3.6370 25 6 1.5050 1.2835 -2.5277 26 1 -0.3634 0.5630 -0.8597 27 1 -0.3633 -1.0260 -0.0577 28 1 -0.3634 0.4630 0.9174 29 1 2.2490 -1.6317 1.1529 30 1 2.1129 -2.6982 3.3039 31 1 3.7831 -2.2781 2.8321 32 1 4.3175 -3.0063 4.9799 33 1 2.6437 -2.7564 5.5760 34 1 5.4337 0.3151 5.3089 35 1 5.4945 -1.1380 9.6489 36 1 3.1505 0.9796 4.6853 37 1 1.8487 -0.0554 5.3453 38 1 2.7178 -1.8235 -3.3685 39 1 1.5620 -0.8740 -4.3337 40 1 3.2266 -0.2860 -4.1066 41 1 2.3293 1.9663 -2.3221 42 1 1.1235 1.4665 -3.5322 43 1 0.7087 1.4460 -1.8014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261452011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:39 Heat of formation + Delta-G solvation = -91.193478 kcal Electronic energy + Delta-G solvation = -25387.288747 eV Core-core repulsion = 21661.558988 eV Total energy + Delta-G solvation = -3725.729759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.68886 -39.60103 -37.79963 -35.95942 -35.01954 -34.70424 -32.35214 -31.32728 -29.81096 -28.36355 -28.14843 -26.79730 -25.30358 -23.70806 -22.38880 -19.96337 -19.79665 -19.65391 -18.16210 -17.42701 -17.01675 -16.52387 -16.10045 -15.57398 -15.47929 -15.10849 -14.74565 -14.50136 -14.20891 -13.75222 -13.62176 -13.39356 -13.18291 -12.97363 -12.69540 -12.58764 -12.46282 -12.34790 -12.14639 -11.95983 -11.80469 -11.62090 -11.51464 -10.90460 -10.59847 -10.37439 -10.16592 -10.09344 -9.87120 -9.15781 -9.14332 -9.06764 -8.63232 -8.39983 -7.93627 -6.18842 -4.31495 2.21789 2.43321 3.01973 3.42235 3.48072 3.54242 3.76699 4.07386 4.24662 4.49677 4.64209 4.86121 4.89765 4.91655 4.97092 5.03314 5.12172 5.15663 5.24313 5.39373 5.42782 5.47001 5.55635 5.63960 5.79981 5.93025 5.95408 6.02248 6.13074 6.46327 6.51638 6.57052 6.69284 6.76862 6.89884 7.07439 7.34636 7.47851 7.74407 8.11120 8.27798 8.64400 8.81427 8.86390 9.41519 10.90219 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030515 B = 0.003439 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.362445 B = 8140.231024 C = 8480.496456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.110 0.890 4 N -0.735 5.735 5 C 0.723 3.277 6 O -0.600 6.600 7 N -0.625 5.625 8 C 0.100 3.900 9 C -0.116 4.116 10 C 0.218 3.782 11 O -0.556 6.556 12 C -0.550 4.550 13 H 0.082 0.918 14 C 0.071 3.929 15 N -0.889 5.889 16 Si 0.937 3.063 17 H -0.294 1.294 18 H -0.325 1.325 19 H -0.251 1.251 20 C 0.109 3.891 21 C 0.514 3.486 22 O -0.533 6.533 23 N -0.619 5.619 24 C 0.079 3.921 25 C 0.067 3.933 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.405 0.595 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.367 0.633 35 H 0.266 0.734 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 1.518 -23.455 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.128 0.872 4 N -0.394 5.394 5 C 0.425 3.575 6 O -0.479 6.479 7 N -0.361 5.361 8 C -0.023 4.023 9 C -0.154 4.154 10 C 0.177 3.823 11 O -0.363 6.363 12 C -0.588 4.588 13 H 0.100 0.900 14 C -0.133 4.133 15 N -0.524 5.524 16 Si 0.772 3.228 17 H -0.222 1.222 18 H -0.257 1.257 19 H -0.176 1.176 20 C -0.014 4.014 21 C 0.301 3.699 22 O -0.409 6.409 23 N -0.354 5.354 24 C -0.063 4.063 25 C -0.076 4.076 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.242 0.758 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.215 0.785 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.956 1.216 -23.497 24.535 hybrid contribution 0.921 -0.028 -0.182 0.939 sum -6.035 1.188 -23.679 24.465 Atomic orbital electron populations 1.22217 0.92978 1.03028 1.03697 1.20478 0.95429 0.97683 0.82612 0.87179 1.44849 1.72373 1.14437 1.07710 1.15340 0.78348 0.84358 0.79408 1.90874 1.58418 1.14188 1.84462 1.47656 1.67429 1.11453 1.09545 1.22083 0.98498 0.81667 1.00093 1.22888 1.01320 0.99073 0.92119 1.20237 0.78622 0.90002 0.93393 1.86458 1.33001 1.35365 1.81519 1.21136 0.99148 1.50877 0.87619 0.89995 1.25155 1.00324 0.93116 0.94749 1.69962 1.31440 1.46859 1.04118 0.85889 0.80722 0.78207 0.77975 1.22166 1.25655 1.17622 1.23013 1.00505 0.98013 0.79847 1.20802 0.77876 0.86460 0.84781 1.90688 1.45480 1.19295 1.85471 1.47627 1.65856 1.14746 1.07158 1.21713 0.99817 0.98859 0.85912 1.22049 1.00386 0.81440 1.03713 0.91058 0.91840 0.90158 0.75827 0.92616 0.92308 0.90347 0.89622 0.78505 0.92426 0.91227 0.91227 0.89423 0.92066 0.92097 0.91952 0.90431 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.23 37.16 0.34 -1.26 16 2 C 0.15 1.80 2.15 -69.08 -0.15 1.65 16 3 H 0.11 1.36 6.85 -51.93 -0.36 1.01 16 4 N -0.74 -11.07 4.99 -59.81 -0.30 -11.36 16 5 C 0.72 13.31 8.45 -86.92 -0.73 12.58 16 6 O -0.60 -12.51 16.26 5.28 0.09 -12.42 16 7 N -0.62 -11.73 3.33 -176.22 -0.59 -12.32 16 8 C 0.10 1.70 6.15 -3.06 -0.02 1.68 16 9 C -0.12 -2.26 5.99 -24.89 -0.15 -2.41 16 10 C 0.22 4.81 0.71 -89.62 -0.06 4.75 16 11 O -0.56 -12.21 8.19 -35.23 -0.29 -12.50 16 12 C -0.55 -14.41 8.89 -34.44 -0.31 -14.72 16 13 H 0.08 2.33 8.00 -52.49 -0.42 1.91 16 14 C 0.07 1.96 5.47 -17.81 -0.10 1.86 16 15 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 16 Si 0.94 22.72 25.13 -169.99 -4.27 18.45 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 19 H -0.25 -5.96 5.12 56.52 0.29 -5.67 16 20 C 0.11 2.24 6.10 -2.52 -0.02 2.23 16 21 C 0.51 6.16 6.96 -10.98 -0.08 6.09 16 22 O -0.53 -8.05 15.20 5.56 0.08 -7.96 16 23 N -0.62 -5.42 3.27 -189.52 -0.62 -6.04 16 24 C 0.08 0.56 10.66 59.84 0.64 1.20 16 25 C 0.07 0.37 9.88 59.85 0.59 0.96 16 26 H 0.07 0.50 5.94 -51.93 -0.31 0.20 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.41 5.98 6.70 -40.82 -0.27 5.71 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.55 7.23 -51.93 -0.38 1.18 16 33 H 0.09 1.63 8.03 -51.93 -0.42 1.21 16 34 H 0.37 7.36 8.41 45.56 0.38 7.74 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 38 H 0.09 0.78 6.90 -51.93 -0.36 0.42 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.26 8.03 -51.93 -0.42 -0.16 16 43 H 0.08 0.42 4.68 -51.93 -0.24 0.17 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -34.09 342.40 -5.82 -39.92 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.82 Total: 9.89 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -0.04 Total: 14.61 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.73 Total: -55.14 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.12 Total: -32.88 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.27 Total: 18.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.09 -5.82 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261452011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.276 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds