Wall clock time and date at job start Tue Mar 31 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 N 1.46501 * 109.46648 * 119.99286 * 2 1 3 5 5 C 1.34773 * 120.00247 * 274.99658 * 4 2 1 6 6 O 1.21595 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00400 * 180.02562 * 5 4 2 8 8 C 1.47023 * 125.64355 * 359.69447 * 7 5 4 9 9 C 1.54338 * 107.26459 * 178.85010 * 8 7 5 10 10 C 1.55150 * 103.02107 * 338.14059 * 9 8 7 11 11 O 1.42899 * 111.00956 * 277.23577 * 10 9 8 12 12 C 1.50695 * 111.04006 * 153.39360 * 10 9 8 13 13 H 1.08002 * 120.00352 * 273.60439 * 12 10 9 14 14 C 1.37885 * 119.99806 * 93.59868 * 12 10 9 15 15 N 1.31521 * 119.99806 * 177.99881 * 14 12 10 16 16 Si 1.86794 * 119.99977 * 357.99766 * 14 12 10 17 17 H 1.48497 * 109.47217 * 95.44047 * 16 14 12 18 18 H 1.48503 * 109.46718 * 215.43941 * 16 14 12 19 19 H 1.48499 * 109.47084 * 335.43433 * 16 14 12 20 20 C 1.47417 * 125.65138 * 180.02562 * 7 5 4 21 21 C 1.50698 * 109.47312 * 239.99477 * 2 1 3 22 22 O 1.21281 * 119.99657 * 255.41947 * 21 2 1 23 23 N 1.34780 * 119.99913 * 75.42269 * 21 2 1 24 24 C 1.46494 * 119.99620 * 183.42892 * 23 21 2 25 25 C 1.46498 * 119.99848 * 3.43181 * 23 21 2 26 26 H 1.09001 * 109.47278 * 56.77888 * 1 2 3 27 27 H 1.08997 * 109.47110 * 176.78060 * 1 2 3 28 28 H 1.09001 * 109.47544 * 296.77937 * 1 2 3 29 29 H 0.97002 * 120.00041 * 95.00495 * 4 2 1 30 30 H 1.08999 * 109.88855 * 298.39599 * 8 7 5 31 31 H 1.09001 * 109.88365 * 59.56356 * 8 7 5 32 32 H 1.09007 * 110.84652 * 219.67673 * 9 8 7 33 33 H 1.08999 * 110.51810 * 96.45468 * 9 8 7 34 34 H 0.96699 * 114.00721 * 176.55896 * 11 10 9 35 35 H 0.97001 * 119.99888 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.36859 * 322.92502 * 20 7 5 37 37 H 1.08999 * 110.37202 * 85.14752 * 20 7 5 38 38 H 1.08996 * 109.47730 * 359.97438 * 24 23 21 39 39 H 1.09000 * 109.47089 * 120.00635 * 24 23 21 40 40 H 1.09007 * 109.46945 * 239.99813 * 24 23 21 41 41 H 1.08995 * 109.47364 * 84.39896 * 25 23 21 42 42 H 1.09000 * 109.46830 * 204.39748 * 25 23 21 43 43 H 1.09000 * 109.46919 * 324.39451 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8575 1.1617 2.4118 7 7 2.5966 -0.6531 3.4576 8 6 2.9748 -2.0718 3.5337 9 6 3.4535 -2.3416 4.9759 10 6 3.8454 -0.9290 5.4841 11 8 5.1645 -0.5796 5.0600 12 6 3.7219 -0.8399 6.9834 13 1 2.7733 -0.5858 7.4330 14 6 4.8199 -1.0829 7.7812 15 7 4.7221 -0.9667 9.0876 16 14 6.4462 -1.5771 7.0066 17 1 7.2965 -0.3726 6.8296 18 1 7.1406 -2.5478 7.8903 19 1 6.1944 -2.2040 5.6842 20 6 2.7841 -0.0420 4.7860 21 6 2.0324 -0.7105 -1.2304 22 8 2.4838 -1.8326 -1.1407 23 7 1.9800 -0.0989 -2.4303 24 6 2.3983 -0.8166 -3.6370 25 6 1.5050 1.2835 -2.5277 26 1 -0.3634 0.5630 -0.8597 27 1 -0.3633 -1.0260 -0.0577 28 1 -0.3634 0.4630 0.9174 29 1 2.2490 -1.6317 1.1529 30 1 2.1129 -2.6982 3.3039 31 1 3.7831 -2.2781 2.8321 32 1 4.3175 -3.0063 4.9799 33 1 2.6437 -2.7564 5.5760 34 1 5.4337 0.3151 5.3089 35 1 5.4945 -1.1380 9.6489 36 1 3.1505 0.9796 4.6853 37 1 1.8487 -0.0554 5.3453 38 1 2.7178 -1.8235 -3.3685 39 1 1.5620 -0.8740 -4.3337 40 1 3.2266 -0.2860 -4.1066 41 1 2.3293 1.9663 -2.3221 42 1 1.1235 1.4665 -3.5322 43 1 0.7087 1.4460 -1.8014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261452011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:39 Heat of formation + Delta-G solvation = -118.811639 kcal Electronic energy + Delta-G solvation = -25388.486360 eV Core-core repulsion = 21661.558988 eV Total energy + Delta-G solvation = -3726.927372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78207 -40.87081 -39.36684 -36.72932 -36.45632 -36.08820 -34.43703 -32.61850 -31.19437 -29.90879 -28.82141 -27.50241 -27.07066 -24.85152 -23.76371 -21.60327 -21.13119 -20.67264 -19.62747 -19.10774 -17.97657 -17.59874 -17.20096 -17.04890 -16.74727 -16.59454 -16.48606 -15.63947 -15.37894 -15.15639 -14.83279 -14.55879 -14.37547 -14.01214 -13.83382 -13.78968 -13.61759 -13.36772 -13.32206 -13.18800 -13.07868 -12.87919 -12.65948 -12.56300 -12.37761 -12.21857 -11.93832 -11.39862 -11.16266 -11.02539 -10.68496 -10.37053 -10.16863 -9.76896 -9.46360 -8.32994 -6.47400 1.28346 1.44757 1.48244 1.57152 1.82966 1.98448 2.09553 2.46691 2.93703 2.99372 3.27869 3.48213 3.83748 3.97154 4.02507 4.07376 4.20669 4.24942 4.39459 4.44140 4.48131 4.56043 4.59807 4.70557 4.75796 4.84047 4.89621 4.93402 4.96819 5.14210 5.17997 5.20803 5.29716 5.35787 5.43954 5.52579 6.00867 6.04368 6.15186 6.59334 6.85615 6.90648 6.94432 7.29927 7.44581 8.80130 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030515 B = 0.003439 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.362445 B = 8140.231024 C = 8480.496456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.109 0.891 4 N -0.726 5.726 5 C 0.722 3.278 6 O -0.628 6.628 7 N -0.629 5.629 8 C 0.107 3.893 9 C -0.114 4.114 10 C 0.216 3.784 11 O -0.556 6.556 12 C -0.545 4.545 13 H 0.047 0.953 14 C 0.022 3.978 15 N -0.938 5.938 16 Si 1.000 3.000 17 H -0.287 1.287 18 H -0.338 1.338 19 H -0.239 1.239 20 C 0.118 3.882 21 C 0.511 3.489 22 O -0.572 6.572 23 N -0.613 5.613 24 C 0.076 3.924 25 C 0.059 3.941 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.408 0.592 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.375 0.625 35 H 0.267 0.733 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 1.444 -26.770 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.127 0.873 4 N -0.383 5.383 5 C 0.424 3.576 6 O -0.510 6.510 7 N -0.365 5.365 8 C -0.015 4.015 9 C -0.152 4.152 10 C 0.175 3.825 11 O -0.365 6.365 12 C -0.582 4.582 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.575 5.575 16 Si 0.833 3.167 17 H -0.213 1.213 18 H -0.270 1.270 19 H -0.164 1.164 20 C -0.005 4.005 21 C 0.298 3.702 22 O -0.451 6.451 23 N -0.346 5.346 24 C -0.066 4.066 25 C -0.082 4.082 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.245 0.755 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.125 1.163 -26.895 27.847 hybrid contribution 0.874 0.079 0.782 1.175 sum -6.251 1.242 -26.113 26.880 Atomic orbital electron populations 1.22160 0.91170 1.03484 1.04276 1.20704 0.96816 0.97246 0.81779 0.87335 1.44813 1.71511 1.14498 1.07491 1.15413 0.78153 0.84068 0.79933 1.90851 1.59642 1.15489 1.84996 1.47594 1.67844 1.12069 1.09004 1.22109 1.00068 0.80982 0.98385 1.22814 1.01545 0.97078 0.93794 1.20134 0.79230 0.92143 0.91008 1.86415 1.32715 1.36189 1.81175 1.21334 0.97501 1.49277 0.90132 0.93493 1.25909 1.03593 0.93361 0.94885 1.70080 1.32459 1.49320 1.05680 0.84877 0.76878 0.77813 0.77108 1.21341 1.27039 1.16374 1.22672 0.99536 0.97373 0.80964 1.20724 0.77854 0.86031 0.85573 1.90671 1.47531 1.20851 1.86093 1.47767 1.64457 1.15783 1.06547 1.21869 1.01480 0.97749 0.85525 1.22303 1.00686 0.79513 1.05733 0.87830 0.91751 0.91886 0.75482 0.89644 0.91271 0.90174 0.89487 0.77603 0.92420 0.92074 0.92077 0.91611 0.89471 0.90501 0.91654 0.87489 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.23 71.98 0.66 -2.06 16 2 C 0.14 3.25 2.15 44.24 0.10 3.35 16 3 H 0.11 2.51 6.85 -2.39 -0.02 2.49 16 4 N -0.73 -20.73 4.99 -461.41 -2.30 -23.03 16 5 C 0.72 25.71 8.45 179.06 1.51 27.22 16 6 O -0.63 -25.77 16.26 -4.01 -0.07 -25.83 16 7 N -0.63 -22.75 3.33 -829.69 -2.76 -25.51 16 8 C 0.11 3.38 6.15 86.73 0.53 3.91 16 9 C -0.11 -4.27 5.99 31.79 0.19 -4.08 16 10 C 0.22 9.36 0.71 -10.14 -0.01 9.35 16 11 O -0.56 -23.48 8.19 -148.98 -1.22 -24.70 16 12 C -0.54 -28.96 8.89 25.60 0.23 -28.73 16 13 H 0.05 2.78 8.00 -2.91 -0.02 2.75 16 14 C 0.02 1.23 5.47 84.66 0.46 1.69 16 15 N -0.94 -56.64 13.96 21.45 0.30 -56.34 16 16 Si 1.00 46.80 25.13 68.60 1.72 48.52 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.34 -16.45 7.11 99.48 0.71 -15.75 16 19 H -0.24 -10.63 5.12 99.48 0.51 -10.12 16 20 C 0.12 4.84 6.10 86.87 0.53 5.37 16 21 C 0.51 11.35 6.96 87.66 0.61 11.96 16 22 O -0.57 -16.62 15.20 -3.03 -0.05 -16.66 16 23 N -0.61 -9.10 3.27 -871.91 -2.85 -11.96 16 24 C 0.08 0.87 10.66 127.77 1.36 2.23 16 25 C 0.06 0.46 9.88 127.77 1.26 1.72 16 26 H 0.10 1.14 5.94 -2.39 -0.01 1.13 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.41 11.31 6.70 -92.71 -0.62 10.69 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.98 7.23 -2.38 -0.02 2.97 16 33 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 34 H 0.37 14.49 8.41 -74.06 -0.62 13.86 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 37 H 0.06 2.58 7.99 -2.39 -0.02 2.56 16 38 H 0.06 1.09 6.90 -2.39 -0.02 1.07 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.24 8.03 -2.39 -0.02 0.22 16 43 H 0.08 0.59 4.68 -2.39 -0.01 0.58 16 Total: -1.00 -74.47 342.40 -0.18 -74.65 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.40 Total: 28.92 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 7.44 Total: 31.94 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -7.62 Total: -116.84 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -1.33 Total: -67.19 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.72 Total: 48.52 kcal Total: -74.47 -0.18 -74.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261452011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.160 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds