Wall clock time and date at job start Tue Mar 31 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47606 * 2 1 4 4 N 1.46496 * 109.47026 * 239.99884 * 2 1 3 5 5 C 1.34782 * 120.00074 * 84.99808 * 4 2 1 6 6 O 1.21589 * 119.99766 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99896 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47093 * 180.02562 * 8 7 5 10 10 O 1.21300 * 120.00043 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00282 * 179.97438 * 9 8 7 12 12 C 1.37092 * 119.99974 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00587 * 359.97438 * 12 11 9 14 14 C 1.38959 * 119.99698 * 179.97438 * 12 11 9 15 15 N 1.31403 * 120.00023 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99907 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47110 * 89.99627 * 16 14 12 18 18 H 1.48503 * 109.46918 * 209.99768 * 16 14 12 19 19 H 1.48502 * 109.47100 * 329.99863 * 16 14 12 20 20 C 1.53004 * 109.47294 * 119.99970 * 2 1 3 21 21 H 1.08998 * 109.57158 * 180.15438 * 20 2 1 22 22 C 1.53173 * 109.52254 * 300.31548 * 20 2 1 23 23 C 1.53181 * 109.03676 * 176.88918 * 22 20 2 24 24 C 1.53100 * 109.15732 * 303.01504 * 23 22 20 25 25 O 1.42899 * 109.41499 * 57.61360 * 24 23 22 26 26 C 1.42908 * 114.09482 * 298.83529 * 25 24 23 27 27 H 1.08997 * 109.47660 * 59.99925 * 1 2 3 28 28 H 1.09003 * 109.47358 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47096 * 299.99520 * 1 2 3 30 30 H 0.97007 * 120.00323 * 264.99917 * 4 2 1 31 31 H 0.96994 * 119.99985 * 0.02562 * 7 5 4 32 32 H 1.09003 * 109.46715 * 300.00025 * 8 7 5 33 33 H 1.08996 * 109.47182 * 60.00054 * 8 7 5 34 34 H 0.96998 * 119.99226 * 359.97438 * 11 9 8 35 35 H 0.97007 * 120.00251 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.54116 * 296.74609 * 22 20 2 37 37 H 1.08997 * 109.54950 * 56.92837 * 22 20 2 38 38 H 1.08988 * 109.52544 * 62.91818 * 23 22 20 39 39 H 1.09001 * 109.51993 * 183.11409 * 23 22 20 40 40 H 1.08996 * 109.47674 * 177.59246 * 24 23 22 41 41 H 1.09003 * 109.48180 * 297.62701 * 24 23 22 42 42 H 1.08993 * 109.48601 * 301.17873 * 26 25 24 43 43 H 1.09001 * 109.47929 * 181.14345 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1469 -0.0183 -2.3572 6 8 1.8582 1.1616 -2.4117 7 7 2.5957 -0.6538 -3.4577 8 6 2.7361 0.0772 -4.7196 9 6 3.2512 -0.8551 -5.7855 10 8 3.4792 -2.0159 -5.5175 11 7 3.4587 -0.3992 -7.0368 12 6 3.9278 -1.2473 -8.0064 13 1 4.1316 -2.2807 -7.7675 14 6 4.1412 -0.7773 -9.2965 15 7 4.5914 -1.5900 -10.2258 16 14 3.7895 1.0102 -9.7095 17 1 5.0116 1.8214 -9.4783 18 1 3.3854 1.1187 -11.1344 19 1 2.6917 1.5114 -8.8441 20 6 2.0400 -0.7213 1.2493 21 1 3.1300 -0.7198 1.2523 22 6 1.5236 -0.0047 2.5007 23 6 1.9755 -0.7796 3.7424 24 6 1.4682 -2.2210 3.6472 25 8 1.9597 -2.8192 2.4461 26 6 1.5303 -2.1649 1.2504 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 2.2490 -1.6318 -1.1526 31 1 2.8257 -1.5950 -3.4143 32 1 1.7656 0.4720 -5.0206 33 1 3.4378 0.9005 -4.5864 34 1 3.2760 0.5290 -7.2512 35 1 4.7407 -1.2619 -11.1264 36 1 1.9285 1.0067 2.5349 37 1 0.4349 0.0391 2.4728 38 1 3.0640 -0.7794 3.7958 39 1 1.5659 -0.3075 4.6354 40 1 1.8229 -2.7886 4.5075 41 1 0.3783 -2.2227 3.6347 42 1 0.4412 -2.1658 1.2065 43 1 1.9297 -2.6921 0.3841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326521561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:37 Heat of formation + Delta-G solvation = -119.215827 kcal Electronic energy + Delta-G solvation = -24243.116665 eV Core-core repulsion = 20516.171767 eV Total energy + Delta-G solvation = -3726.944899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52377 -39.53001 -38.39285 -36.36474 -34.46858 -33.76175 -33.62015 -31.85042 -31.64150 -29.25776 -27.59027 -25.51652 -24.98902 -24.19208 -22.09908 -20.64886 -19.83163 -19.63182 -18.87069 -18.14804 -16.79066 -16.43434 -16.14169 -15.62389 -15.54458 -15.19192 -15.02850 -14.89612 -14.55194 -14.32560 -13.99379 -13.90729 -13.23916 -13.14829 -12.99825 -12.81116 -12.48026 -12.35213 -12.16654 -12.11765 -11.64693 -11.43425 -11.29899 -11.23045 -10.96814 -10.64723 -10.63956 -10.10970 -10.05353 -9.75958 -9.69489 -9.24477 -8.76388 -8.70943 -8.30166 -6.40504 -3.93029 2.71413 3.00007 3.04731 3.12826 3.31418 3.48795 3.58160 4.03777 4.21267 4.29294 4.35719 4.45928 4.52054 4.62048 4.74424 4.84833 5.01384 5.05233 5.12561 5.14663 5.19372 5.32946 5.43927 5.49185 5.55628 5.59251 5.65161 5.68990 5.77846 5.82387 5.85817 5.87520 6.11571 6.48085 6.64035 6.81907 7.01638 7.45304 8.00637 8.16191 8.44737 8.72597 8.82086 9.30219 9.64007 10.71652 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.002456 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.001994 B =11396.834066 C =11906.222284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 H 0.092 0.908 4 N -0.746 5.746 5 C 0.707 3.293 6 O -0.598 6.598 7 N -0.725 5.725 8 C 0.126 3.874 9 C 0.438 3.562 10 O -0.579 6.579 11 N -0.577 5.577 12 C -0.310 4.310 13 H 0.121 0.879 14 C 0.045 3.955 15 N -0.874 5.874 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.267 1.267 20 C -0.131 4.131 21 H 0.087 0.913 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.058 3.942 25 O -0.381 6.381 26 C 0.061 3.939 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.395 0.605 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.374 0.626 35 H 0.275 0.725 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 3.912 25.842 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 H 0.110 0.890 4 N -0.402 5.402 5 C 0.406 3.594 6 O -0.477 6.477 7 N -0.383 5.383 8 C -0.002 4.002 9 C 0.224 3.776 10 O -0.464 6.464 11 N -0.214 5.214 12 C -0.438 4.438 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.513 5.513 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.150 4.150 21 H 0.105 0.895 22 C -0.155 4.155 23 C -0.194 4.194 24 C -0.018 4.018 25 O -0.299 6.299 26 C -0.016 4.016 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.848 4.019 25.685 27.156 hybrid contribution -0.149 0.784 -0.587 0.990 sum -7.997 4.803 25.098 26.776 Atomic orbital electron populations 1.22351 0.95564 1.02207 1.02768 1.20674 0.93833 0.97135 0.81932 0.89046 1.45212 1.72390 1.13711 1.08925 1.15843 0.78319 0.84966 0.80252 1.90896 1.57670 1.14343 1.84775 1.44765 1.70338 1.14926 1.08233 1.20796 1.02129 0.94296 0.83007 1.19667 0.85327 0.88957 0.83620 1.90538 1.56790 1.18244 1.80789 1.42115 1.58690 1.11674 1.08948 1.19439 1.40403 0.95950 0.88042 0.86092 1.25070 0.96996 0.98444 0.95438 1.69616 1.43443 1.35262 1.03024 0.86668 0.79170 0.84464 0.79178 1.19393 1.19996 1.19200 1.22081 1.02124 0.96141 0.94669 0.89469 1.21671 1.01421 0.99327 0.93083 1.22193 1.02303 0.96393 0.98472 1.22597 0.98008 0.93469 0.87773 1.87964 1.74095 1.54047 1.13804 1.22734 0.99089 0.91974 0.87757 0.91599 0.92318 0.91529 0.77018 0.75480 0.89917 0.89898 0.79233 0.91392 0.90966 0.90984 0.90929 0.90717 0.88941 0.93180 0.92323 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.78 37.16 0.33 -1.17 16 2 C 0.17 1.62 2.41 -67.93 -0.16 1.45 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 N -0.75 -8.32 5.00 -58.68 -0.29 -8.62 16 5 C 0.71 10.79 8.53 -86.92 -0.74 10.05 16 6 O -0.60 -10.97 16.01 5.29 0.08 -10.89 16 7 N -0.73 -11.57 5.53 -66.41 -0.37 -11.94 16 8 C 0.13 2.21 6.15 -5.19 -0.03 2.17 16 9 C 0.44 9.64 7.85 -10.99 -0.09 9.55 16 10 O -0.58 -14.61 15.24 5.54 0.08 -14.52 16 11 N -0.58 -13.43 5.09 -10.96 -0.06 -13.48 16 12 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 13 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -25.00 13.96 55.50 0.77 -24.22 16 16 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 20 C -0.13 -1.00 2.38 -90.48 -0.22 -1.21 16 21 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.12 -0.73 5.03 -26.55 -0.13 -0.86 16 23 C -0.16 -0.90 6.14 -26.59 -0.16 -1.06 16 24 C 0.06 0.38 6.84 37.21 0.25 0.63 16 25 O -0.38 -3.50 10.77 -35.23 -0.38 -3.88 16 26 C 0.06 0.48 5.62 37.21 0.21 0.69 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.47 6.38 -51.93 -0.33 0.14 16 29 H 0.07 0.47 6.36 -51.92 -0.33 0.14 16 30 H 0.40 3.65 6.93 -40.82 -0.28 3.37 16 31 H 0.41 6.38 7.45 -40.82 -0.30 6.07 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 35 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.41 6.28 -51.93 -0.33 0.08 16 38 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.42 6.31 -51.93 -0.33 0.09 16 43 H 0.09 0.69 6.60 -51.93 -0.34 0.35 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -33.22 344.08 -6.91 -40.12 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -6.23 Total: 15.29 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -0.99 Total: 12.64 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.06 Total: -58.27 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.21 Total: -29.29 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.22 -6.91 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326521561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.092 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds