Wall clock time and date at job start Tue Mar 31 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47314 * 2 1 4 4 O 1.42902 * 109.46715 * 119.99503 * 2 1 3 5 5 C 1.52994 * 109.47252 * 239.99601 * 2 1 3 6 6 N 1.46895 * 109.47361 * 179.74488 * 5 2 1 7 7 C 1.46954 * 111.00401 * 170.20685 * 6 5 2 8 8 C 1.53054 * 109.36627 * 183.18444 * 7 6 5 9 9 N 1.46948 * 109.36185 * 301.59726 * 8 7 6 10 10 C 1.46911 * 110.99527 * 183.18718 * 9 8 7 11 11 C 1.50694 * 109.47160 * 300.49601 * 10 9 8 12 12 O 1.21283 * 120.00291 * 354.51433 * 11 10 9 13 13 N 1.34781 * 120.00038 * 174.52292 * 11 10 9 14 14 C 1.46499 * 119.99944 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47073 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99676 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00098 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00060 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00012 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47204 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47188 * 120.00425 * 19 17 15 22 22 H 1.48498 * 109.46980 * 240.00476 * 19 17 15 23 23 C 1.46953 * 110.88437 * 59.32563 * 9 8 7 24 24 H 1.08996 * 109.49095 * 60.66142 * 23 9 8 25 25 C 1.52998 * 109.49334 * 180.70846 * 23 9 8 26 26 C 1.46958 * 110.99831 * 294.00414 * 6 5 2 27 27 H 1.09007 * 109.46737 * 300.00603 * 1 2 3 28 28 H 1.08996 * 109.46450 * 60.00278 * 1 2 3 29 29 H 1.08990 * 109.47051 * 180.02562 * 1 2 3 30 30 H 0.96693 * 114.00609 * 300.00164 * 4 2 1 31 31 H 1.09002 * 109.47218 * 59.74188 * 5 2 1 32 32 H 1.09002 * 109.47359 * 299.74325 * 5 2 1 33 33 H 1.09006 * 109.48587 * 303.15315 * 7 6 5 34 34 H 1.09005 * 109.48957 * 63.19348 * 7 6 5 35 35 H 1.09001 * 109.48483 * 181.62567 * 8 7 6 36 36 H 1.09004 * 109.48578 * 61.56789 * 8 7 6 37 37 H 1.09006 * 109.46883 * 180.49357 * 10 9 8 38 38 H 1.09000 * 109.46876 * 60.50042 * 10 9 8 39 39 H 0.96995 * 119.99561 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47237 * 299.99610 * 14 13 11 41 41 H 1.09003 * 109.47244 * 59.99579 * 14 13 11 42 42 H 0.96991 * 119.99597 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46857 * 59.99727 * 25 23 9 44 44 H 1.08997 * 109.47691 * 179.97438 * 25 23 9 45 45 H 1.09002 * 109.47125 * 299.99780 * 25 23 9 46 46 H 1.09003 * 109.48731 * 56.83834 * 26 6 5 47 47 H 1.09005 * 109.50840 * 296.78916 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0401 -0.7213 -1.2491 6 7 3.5090 -0.7160 -1.2522 7 6 4.0367 -1.5937 -2.3061 8 6 5.5648 -1.6222 -2.2250 9 7 6.0860 -0.2561 -2.3715 10 6 7.5551 -0.2507 -2.3746 11 6 8.0623 -0.8360 -1.0819 12 8 7.2817 -1.1278 -0.2008 13 7 9.3835 -1.0352 -0.9049 14 6 9.8766 -1.6036 0.3521 15 6 11.3778 -1.7232 0.2945 16 1 11.9111 -1.4070 -0.5897 17 6 12.0703 -2.2354 1.3711 18 7 11.4208 -2.6200 2.4481 19 14 13.9311 -2.3829 1.3001 20 1 14.4175 -1.8848 -0.0116 21 1 14.5338 -1.5747 2.3903 22 1 14.3214 -3.8062 1.4652 23 6 5.5585 0.6217 -1.3176 24 1 5.8642 0.2432 -0.3423 25 6 6.1064 2.0371 -1.5105 26 6 4.0304 0.6502 -1.3988 27 1 -0.3633 0.5140 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7210 -0.2701 1.9980 31 1 1.6730 -0.2102 -2.1392 32 1 1.6805 -1.7503 -1.2468 33 1 3.6463 -2.6022 -2.1687 34 1 3.7310 -1.2153 -3.2816 35 1 5.9597 -2.2499 -3.0238 36 1 5.8702 -2.0265 -1.2598 37 1 7.9145 0.7734 -2.4755 38 1 7.9188 -0.8474 -3.2111 39 1 10.0078 -0.8021 -1.6097 40 1 9.5951 -0.9532 1.1802 41 1 9.4392 -2.5910 0.5006 42 1 11.9080 -2.9807 3.2053 43 1 5.7998 2.4156 -2.4856 44 1 5.7146 2.6881 -0.7289 45 1 7.1948 2.0162 -1.4546 46 1 3.6353 1.2778 -0.5999 47 1 3.7250 1.0548 -2.3638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327064224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:07 Heat of formation + Delta-G solvation = -72.318046 kcal Electronic energy + Delta-G solvation = -25564.520252 eV Core-core repulsion = 21975.442088 eV Total energy + Delta-G solvation = -3589.078164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13636 -38.53872 -37.20209 -35.05841 -34.05196 -32.34913 -32.27803 -31.51764 -29.21298 -27.39424 -26.87279 -25.57473 -23.81277 -22.41871 -21.70988 -20.91843 -19.88062 -19.38625 -17.45729 -16.98578 -16.24139 -15.81098 -15.68923 -15.20718 -15.14059 -14.71020 -14.60917 -14.32179 -14.11253 -14.00344 -13.58878 -13.05872 -12.76104 -12.68631 -12.40517 -12.19990 -12.05052 -11.97743 -11.93784 -11.74406 -11.61242 -11.44553 -11.08330 -10.95420 -10.91638 -10.59648 -10.45288 -10.31056 -10.21828 -9.99642 -9.68870 -9.36567 -8.71917 -8.21285 -7.84541 -7.69887 -6.15622 -4.22650 3.23737 3.30811 3.33868 3.34773 3.82175 4.06957 4.14554 4.15783 4.40195 4.70083 4.85882 4.93900 4.97900 5.14791 5.20362 5.21112 5.26959 5.40129 5.44142 5.50179 5.51628 5.62331 5.65927 5.68083 5.69894 5.73741 5.75121 5.81063 5.84946 5.93575 6.12913 6.19704 6.45894 6.60705 7.01642 7.08649 7.23158 7.30683 7.33894 7.48195 7.53477 7.67138 7.67996 7.98466 8.63971 8.79128 9.12161 9.44140 10.94497 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.003047 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.243457 B = 9186.444023 C = 9712.759521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.052 0.948 4 O -0.546 6.546 5 C 0.063 3.937 6 N -0.525 5.525 7 C 0.065 3.935 8 C 0.037 3.963 9 N -0.512 5.512 10 C 0.027 3.973 11 C 0.464 3.536 12 O -0.545 6.545 13 N -0.712 5.712 14 C 0.250 3.750 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.062 3.938 24 H 0.093 0.907 25 C -0.145 4.145 26 C 0.069 3.931 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.370 0.630 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.390 0.610 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.490 7.869 -10.338 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.070 0.930 4 O -0.350 6.350 5 C -0.065 4.065 6 N -0.249 5.249 7 C -0.063 4.063 8 C -0.091 4.091 9 N -0.236 5.236 10 C -0.105 4.105 11 C 0.248 3.752 12 O -0.425 6.425 13 N -0.360 5.360 14 C 0.128 3.872 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.046 4.046 24 H 0.110 0.890 25 C -0.203 4.203 26 C -0.059 4.059 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.216 0.784 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.222 0.778 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.745 7.172 -9.970 22.410 hybrid contribution 1.067 0.360 0.095 1.130 sum -17.678 7.532 -9.875 21.605 Atomic orbital electron populations 1.22516 0.96696 1.02851 1.02329 1.21781 0.91755 0.95298 0.86744 0.92986 1.86725 1.76746 1.56496 1.15026 1.22102 0.88367 1.01298 0.94737 1.61983 1.06162 1.09572 1.47149 1.22094 0.95204 0.96963 0.92017 1.22400 0.93543 0.89868 1.03269 1.62655 1.04897 1.09897 1.46129 1.22344 0.89364 1.02883 0.95878 1.21787 0.83506 0.79923 0.90015 1.90608 1.54960 1.52399 1.44562 1.46617 1.06387 1.62538 1.20493 1.19075 0.93756 0.93976 0.80346 1.21269 0.91220 1.43776 1.01815 0.91905 1.24963 0.99103 0.94937 0.95075 1.69989 1.35894 1.41394 1.04962 0.86371 0.84601 0.77860 0.78135 1.19643 1.20809 1.20798 1.21945 0.93130 0.92749 0.96789 0.88952 1.21864 1.01206 0.95683 1.01551 1.22171 0.94814 0.89548 0.99387 0.92198 0.91833 0.91715 0.78423 0.93927 0.90248 0.90658 0.94893 0.91145 0.89918 0.87930 0.88531 0.77803 0.95685 0.95674 0.92520 0.92426 0.92351 0.92325 0.90838 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.54 37.16 0.35 -1.00 16 2 C 0.10 1.04 3.46 -26.73 -0.09 0.94 16 3 H 0.05 0.50 6.48 -51.93 -0.34 0.17 16 4 O -0.55 -6.71 13.19 -35.23 -0.46 -7.18 16 5 C 0.06 0.70 4.65 -3.83 -0.02 0.68 16 6 N -0.52 -7.30 4.58 -234.46 -1.07 -8.38 16 7 C 0.07 0.87 5.61 -3.77 -0.02 0.85 16 8 C 0.04 0.57 5.20 -3.77 -0.02 0.55 16 9 N -0.51 -7.54 4.73 -227.93 -1.08 -8.62 16 10 C 0.03 0.39 5.52 -4.97 -0.03 0.37 16 11 C 0.46 9.09 7.21 -10.99 -0.08 9.01 16 12 O -0.55 -12.79 11.60 5.55 0.06 -12.72 16 13 N -0.71 -14.92 5.55 -61.47 -0.34 -15.26 16 14 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 15 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -26.36 13.29 55.43 0.74 -25.62 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.06 0.93 2.21 -67.66 -0.15 0.78 16 24 H 0.09 1.80 5.61 -51.93 -0.29 1.51 16 25 C -0.15 -1.81 8.87 37.16 0.33 -1.49 16 26 C 0.07 0.91 4.69 -3.76 -0.02 0.89 16 27 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.37 2.98 9.08 45.56 0.41 3.39 16 31 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 33 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.61 5.59 -51.93 -0.29 1.32 16 37 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.76 6.26 -51.93 -0.33 0.44 16 46 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -33.65 364.28 -9.13 -42.78 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.25 Total: 8.77 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.19 Total: 4.76 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -1.76 Total: -57.88 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.40 Total: -19.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.65 -9.13 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327064224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds