Wall clock time and date at job start Tue Mar 31 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47206 * 2 1 4 4 C 1.46496 * 120.00432 * 270.00567 * 3 2 1 5 5 C 1.50701 * 109.46957 * 269.99701 * 4 3 2 6 6 H 1.07997 * 120.00124 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00107 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99907 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47215 * 90.00331 * 9 7 5 11 11 H 1.48501 * 109.47010 * 210.00408 * 9 7 5 12 12 H 1.48503 * 109.46799 * 330.00227 * 9 7 5 13 13 C 1.34782 * 119.99723 * 90.00303 * 3 2 1 14 14 O 1.21273 * 119.99893 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99678 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.46542 * 180.02562 * 15 13 3 17 17 C 1.46899 * 110.99624 * 177.10490 * 16 15 13 18 18 C 1.50701 * 110.45922 * 63.01169 * 17 16 15 19 19 N 1.34784 * 119.99747 * 37.76015 * 18 17 16 20 20 O 1.21283 * 120.00522 * 217.48520 * 18 17 16 21 21 C 1.54510 * 110.51202 * 185.61735 * 17 16 15 22 22 C 1.54474 * 104.06367 * 118.78440 * 21 17 16 23 23 O 1.44429 * 104.80338 * 23.97873 * 22 21 17 24 24 C 1.44424 * 105.27441 * 319.48977 * 23 22 21 25 25 H 1.09008 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47369 * 299.99303 * 1 2 3 27 27 H 1.09004 * 109.47514 * 59.99527 * 1 2 3 28 28 H 1.09008 * 109.47371 * 240.00661 * 2 1 3 29 29 H 1.08994 * 109.47449 * 120.00335 * 2 1 3 30 30 H 1.09004 * 109.47152 * 29.99521 * 4 3 2 31 31 H 1.09003 * 109.47422 * 150.00020 * 4 3 2 32 32 H 0.97002 * 120.00356 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47182 * 60.00167 * 15 13 3 34 34 H 1.09000 * 109.47186 * 299.99781 * 15 13 3 35 35 H 1.00900 * 111.00068 * 53.15653 * 16 15 13 36 36 H 0.96995 * 120.00186 * 174.42047 * 19 18 17 37 37 H 0.96999 * 119.99733 * 354.41639 * 19 18 17 38 38 H 1.09005 * 110.50793 * 237.42928 * 21 17 16 39 39 H 1.08998 * 110.51036 * 0.13451 * 21 17 16 40 40 H 1.09000 * 110.37710 * 142.81415 * 22 21 17 41 41 H 1.09006 * 110.37054 * 265.03910 * 22 21 17 42 42 H 1.09000 * 110.37314 * 281.68153 * 24 23 22 43 43 H 1.08997 * 110.37062 * 159.34590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6856 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3489 3.1260 -3.6179 9 14 5.9129 2.0959 -3.4176 10 1 5.9758 0.8748 -4.2604 11 1 6.3921 3.2631 -4.2007 12 1 6.7733 1.9160 -2.2206 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1600 1.1673 15 6 1.9923 1.3057 2.4723 16 7 2.3099 2.2060 3.5889 17 6 2.0122 1.5698 4.8791 18 6 2.8761 0.3510 5.0773 19 7 4.1579 0.3587 4.6606 20 8 2.4196 -0.6350 5.6161 21 6 2.2163 2.5722 6.0370 22 6 0.8200 2.6827 6.6884 23 8 0.1525 1.4497 6.3418 24 6 0.5166 1.1932 4.9679 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.5815 1.6878 -2.0283 31 1 2.0954 3.1412 -1.1382 32 1 3.6749 3.5166 -4.4438 33 1 2.6229 0.4185 2.5298 34 1 0.9445 1.0112 2.5303 35 1 1.8200 3.0832 3.4968 36 1 4.7371 -0.3935 4.8596 37 1 4.5011 1.1164 4.1616 38 1 2.9423 2.1862 6.7527 39 1 2.5359 3.5405 5.6520 40 1 0.9122 2.7729 7.7708 41 1 0.2782 3.5368 6.2820 42 1 -0.0724 1.8176 4.2963 43 1 0.3758 0.1392 4.7286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327066793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:30 Heat of formation + Delta-G solvation = -109.546142 kcal Electronic energy + Delta-G solvation = -25636.804890 eV Core-core repulsion = 21910.279300 eV Total energy + Delta-G solvation = -3726.525590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98026 -39.10206 -38.34627 -35.78081 -35.18316 -33.44688 -32.84521 -31.41214 -30.16088 -29.07460 -27.52022 -25.60329 -24.03913 -23.07981 -22.78665 -22.21192 -19.78876 -18.55068 -17.67160 -17.42434 -16.79793 -16.44333 -16.02421 -15.86598 -15.71427 -15.31301 -14.84440 -14.80118 -14.53857 -14.07939 -13.70754 -13.45886 -13.19678 -12.98520 -12.80207 -12.54786 -12.15492 -12.02974 -11.88682 -11.77493 -11.66107 -11.36945 -11.24192 -10.95060 -10.79025 -10.57005 -10.17113 -10.14760 -10.05231 -9.74073 -9.67979 -9.06677 -8.70012 -8.47296 -7.73798 -6.08172 -4.12962 2.40785 3.24254 3.27364 3.28640 3.34508 3.39069 3.41239 3.77106 4.14556 4.28431 4.37160 4.42667 4.69905 4.77961 4.86778 4.93578 5.17776 5.21326 5.26613 5.28023 5.40692 5.43541 5.44691 5.51620 5.57419 5.62562 5.70761 5.96651 6.17099 6.32750 6.41574 6.53805 6.70153 6.99826 7.04363 7.28014 7.38234 7.47994 7.87901 8.14778 8.18870 8.33633 8.84587 9.00771 9.52284 10.99929 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.003843 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.715727 B = 7284.801736 C = 7588.675413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.029 3.971 16 N -0.650 5.650 17 C 0.062 3.938 18 C 0.539 3.461 19 N -0.842 5.842 20 O -0.540 6.540 21 C -0.138 4.138 22 C 0.041 3.959 23 O -0.361 6.361 24 C 0.033 3.967 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.363 0.637 36 H 0.399 0.601 37 H 0.414 0.586 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -3.912 16.494 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.327 5.327 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.405 6.405 15 C -0.103 4.103 16 N -0.286 5.286 17 C -0.034 4.034 18 C 0.322 3.678 19 N -0.405 5.405 20 O -0.416 6.416 21 C -0.177 4.177 22 C -0.036 4.036 23 O -0.279 6.279 24 C -0.047 4.047 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.186 0.814 36 H 0.230 0.770 37 H 0.245 0.755 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.880 -4.013 16.804 17.707 hybrid contribution 0.624 -0.010 -0.832 1.040 sum -3.256 -4.023 15.971 16.789 Atomic orbital electron populations 1.22222 0.96710 1.01578 1.02244 1.21435 0.93565 0.84220 1.02742 1.48249 1.63596 1.13235 1.07661 1.19279 0.96337 0.93589 0.77969 1.21417 0.96873 1.31954 1.06261 0.92471 1.24929 0.97851 0.94885 0.96389 1.69927 1.35718 1.33389 1.14331 0.86500 0.84657 0.77680 0.78594 1.20670 1.21091 1.19895 1.19992 0.79091 0.87063 0.84696 1.90683 1.45151 1.17795 1.86859 1.22083 1.00773 0.96901 0.90560 1.60345 1.63278 1.06638 0.98362 1.22587 0.94680 0.93802 0.92284 1.19922 0.82775 0.87666 0.77433 1.43849 1.12271 1.25525 1.58878 1.90772 1.73486 1.33903 1.43433 1.22982 0.99088 0.99779 0.95827 1.23494 0.90946 0.87994 1.01175 1.89191 1.70949 1.40721 1.27022 1.24059 0.92553 1.03312 0.84770 0.92032 0.93272 0.91896 0.89743 0.91932 0.94999 0.93870 0.92700 0.88485 0.92188 0.81431 0.77005 0.75490 0.89724 0.88091 0.88615 0.91714 0.91474 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.10 1.60 5.93 -4.05 -0.02 1.57 16 3 N -0.60 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.25 6.21 5.16 -5.20 -0.03 6.18 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.79 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.51 9.60 7.70 -10.98 -0.08 9.51 16 14 O -0.53 -12.14 15.72 5.56 0.09 -12.06 16 15 C 0.03 0.39 4.20 -4.97 -0.02 0.37 16 16 N -0.65 -7.78 5.06 -100.79 -0.51 -8.29 16 17 C 0.06 0.68 0.88 -131.19 -0.12 0.56 16 18 C 0.54 6.70 5.66 -10.98 -0.06 6.63 16 19 N -0.84 -8.38 8.53 31.22 0.27 -8.12 16 20 O -0.54 -8.54 16.66 5.55 0.09 -8.44 16 21 C -0.14 -1.24 6.43 -25.17 -0.16 -1.40 16 22 C 0.04 0.37 7.63 37.93 0.29 0.66 16 23 O -0.36 -4.51 11.65 -35.23 -0.41 -4.92 16 24 C 0.03 0.37 5.25 37.93 0.20 0.57 16 25 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.35 8.07 -51.92 -0.42 0.94 16 29 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.10 1.29 6.37 -51.93 -0.33 0.95 16 34 H 0.06 0.72 5.88 -51.93 -0.31 0.42 16 35 H 0.36 4.40 8.21 -39.29 -0.32 4.07 16 36 H 0.40 3.39 8.93 -40.82 -0.36 3.03 16 37 H 0.41 4.03 8.25 -40.82 -0.34 3.70 16 38 H 0.08 0.75 7.73 -51.93 -0.40 0.34 16 39 H 0.10 0.79 7.90 -51.93 -0.41 0.38 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.69 7.74 -51.93 -0.40 0.29 16 43 H 0.10 1.30 7.29 -51.93 -0.38 0.92 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -34.11 352.36 -6.35 -40.45 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.42 Total: 7.50 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.05 Total: 9.70 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.06 Total: -53.94 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.23 Total: -25.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.11 -6.35 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327066793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.091 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds