Wall clock time and date at job start Tue Mar 31 2020 03:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.52997 * 109.47212 * 89.99960 * 3 2 1 5 5 H 1.09004 * 109.47346 * 305.00035 * 4 3 2 6 6 O 1.42904 * 109.47396 * 64.99584 * 4 3 2 7 7 C 1.52997 * 109.47504 * 184.99959 * 4 3 2 8 8 N 1.46496 * 109.47451 * 180.02562 * 7 4 3 9 9 C 1.36943 * 120.00174 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99666 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99962 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00091 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00303 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46999 * 89.99412 * 13 11 9 15 15 H 1.48498 * 109.47233 * 209.99811 * 13 11 9 16 16 H 1.48498 * 109.46593 * 329.99740 * 13 11 9 17 17 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 18 18 O 1.21291 * 119.99579 * 180.02562 * 17 2 1 19 19 C 1.50697 * 120.00055 * 0.02562 * 17 2 1 20 20 H 1.09000 * 110.21685 * 40.69597 * 19 17 2 21 21 C 1.54484 * 110.24078 * 278.76756 * 19 17 2 22 22 C 1.54627 * 101.76188 * 215.58435 * 21 19 17 23 23 C 1.51279 * 104.19617 * 24.79997 * 22 21 19 24 24 O 1.21287 * 124.94366 * 163.77450 * 23 22 21 25 25 N 1.34559 * 110.14476 * 343.67550 * 23 22 21 26 26 C 1.46493 * 124.43924 * 179.64359 * 25 23 22 27 27 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 28 28 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 29 29 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 30 30 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 31 31 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 32 32 H 0.96708 * 113.99258 * 60.00195 * 6 4 3 33 33 H 1.09004 * 109.46881 * 300.00361 * 7 4 3 34 34 H 1.09002 * 109.47016 * 59.99741 * 7 4 3 35 35 H 0.97008 * 120.00373 * 359.97438 * 8 7 4 36 36 H 0.97001 * 120.00493 * 180.02562 * 12 11 9 37 37 H 1.08998 * 110.97143 * 333.70212 * 21 19 17 38 38 H 1.08999 * 110.96570 * 97.46764 * 21 19 17 39 39 H 1.09000 * 110.48576 * 143.47769 * 22 21 19 40 40 H 1.09002 * 110.48838 * 265.98860 * 22 21 19 41 41 H 1.09000 * 109.47034 * 270.07410 * 26 25 23 42 42 H 1.09002 * 109.47423 * 30.07665 * 26 25 23 43 43 H 1.09008 * 109.47156 * 150.07608 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5060 1.7550 1.9816 6 8 3.3208 0.7726 2.0815 7 6 3.1058 3.0939 1.4444 8 7 3.3505 3.5166 2.8255 9 6 3.9325 4.7303 3.0773 10 1 4.2108 5.3761 2.2576 11 6 4.1639 5.1310 4.3860 12 7 4.7228 6.2978 4.6280 13 14 3.6819 4.0143 5.8038 14 1 4.8196 3.1205 6.1387 15 1 3.3355 4.8399 6.9885 16 1 2.5075 3.1947 5.4111 17 6 2.1388 -1.1672 0.0005 18 8 3.3518 -1.1670 0.0010 19 6 1.3854 -2.4723 0.0005 20 1 0.5257 -2.4109 -0.6668 21 6 0.9263 -2.8243 1.4329 22 6 1.0654 -4.3643 1.4389 23 6 2.1076 -4.6468 0.3794 24 8 2.7085 -5.6933 0.2576 25 7 2.2698 -3.5692 -0.4100 26 6 3.2082 -3.4985 -1.5327 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1498 1.1385 -0.5138 31 1 1.6083 2.0285 -0.5138 32 1 4.1836 0.6813 1.6543 33 1 4.0522 3.0495 0.9053 34 1 2.4434 3.8093 0.9570 35 1 3.1002 2.9367 3.5618 36 1 4.8849 6.5777 5.5425 37 1 1.5825 -2.3705 2.1755 38 1 -0.1093 -2.5256 1.5951 39 1 1.4079 -4.7126 2.4133 40 1 0.1169 -4.8341 1.1787 41 1 4.1708 -3.1291 -1.1790 42 1 3.3360 -4.4919 -1.9627 43 1 2.8160 -2.8216 -2.2919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486293932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:55 Heat of formation + Delta-G solvation = -120.018947 kcal Electronic energy + Delta-G solvation = -25267.038523 eV Core-core repulsion = 21540.058798 eV Total energy + Delta-G solvation = -3726.979725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03000 -40.44459 -38.78212 -37.28047 -36.49842 -35.91738 -33.77375 -33.47638 -31.49272 -29.41512 -28.02026 -27.62701 -26.64478 -24.33528 -23.25666 -22.70519 -21.07497 -20.02345 -19.81534 -18.71536 -17.88170 -17.62302 -17.10910 -16.94630 -16.58076 -16.41515 -16.21964 -15.71803 -15.33020 -15.03867 -14.87498 -14.57409 -14.53795 -14.33235 -14.07821 -13.82621 -13.56867 -13.51105 -13.29550 -13.14440 -12.98593 -12.86536 -12.79974 -12.54655 -12.25553 -12.07670 -11.91950 -11.86286 -11.19491 -11.07183 -11.03795 -10.87460 -9.77757 -9.52923 -9.32537 -8.05808 -5.38704 1.36153 1.40231 1.40430 1.46882 1.52889 1.78510 2.17047 2.46155 3.21464 3.25509 3.32568 3.39389 3.60636 3.69699 3.95425 3.98079 4.03084 4.16075 4.26265 4.28305 4.35274 4.42286 4.52322 4.58776 4.70876 4.78613 4.83028 4.84457 4.90427 4.91117 5.02953 5.07791 5.22414 5.33330 5.48713 5.71933 5.97587 6.18437 6.38239 6.75311 7.00672 7.05829 7.18034 7.82694 8.00592 9.15631 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.003358 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.392593 B = 8337.218321 C = 8709.905521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.603 5.603 3 C 0.095 3.905 4 C 0.094 3.906 5 H 0.103 0.897 6 O -0.566 6.566 7 C 0.124 3.876 8 N -0.754 5.754 9 C -0.236 4.236 10 H 0.059 0.941 11 C -0.063 4.063 12 N -0.983 5.983 13 Si 0.957 3.043 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.253 1.253 17 C 0.504 3.496 18 O -0.564 6.564 19 C 0.115 3.885 20 H 0.144 0.856 21 C -0.114 4.114 22 C -0.142 4.142 23 C 0.504 3.496 24 O -0.583 6.583 25 N -0.607 5.607 26 C 0.102 3.898 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.377 0.623 33 H 0.023 0.977 34 H 0.046 0.954 35 H 0.367 0.633 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 -20.285 -13.369 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.335 5.335 3 C -0.029 4.029 4 C 0.033 3.967 5 H 0.121 0.879 6 O -0.372 6.372 7 C -0.003 4.003 8 N -0.400 5.400 9 C -0.367 4.367 10 H 0.077 0.923 11 C -0.254 4.254 12 N -0.633 5.633 13 Si 0.785 3.215 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.178 1.178 17 C 0.292 3.708 18 O -0.442 6.442 19 C 0.008 3.992 20 H 0.161 0.839 21 C -0.152 4.152 22 C -0.182 4.182 23 C 0.294 3.706 24 O -0.464 6.464 25 N -0.340 5.340 26 C -0.040 4.040 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.225 0.775 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.126 0.874 40 H 0.160 0.840 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.134 -20.674 -13.206 29.923 hybrid contribution 1.157 0.245 0.574 1.315 sum -15.976 -20.429 -12.632 28.847 Atomic orbital electron populations 1.22305 0.76524 1.05363 1.04029 1.47762 1.08609 1.04580 1.72538 1.22039 0.98966 0.86070 0.95821 1.22492 0.93618 0.86372 0.94170 0.87942 1.86481 1.29816 1.62913 1.58004 1.21456 0.98037 0.95138 0.85704 1.42601 1.74793 1.18839 1.03770 1.19067 1.30725 0.94122 0.92785 0.92334 1.25485 1.01575 0.98414 0.99950 1.69875 1.50801 1.22644 1.20029 0.85376 0.78805 0.78240 0.79093 1.21211 1.21855 1.17805 1.21058 0.87885 0.86116 0.75789 1.90702 1.15679 1.87505 1.50284 1.21985 0.92913 0.83753 1.00557 0.83895 1.22716 1.05623 0.94487 0.92375 1.22407 0.99844 0.97291 0.98639 1.21754 0.83428 0.82309 0.83108 1.90696 1.53096 1.28803 1.73778 1.48110 1.40276 1.13975 1.31603 1.21493 0.92361 1.02440 0.87669 0.89956 0.88630 0.89753 0.90732 0.86511 0.77493 0.95851 0.93621 0.79977 0.93258 0.91232 0.83704 0.87398 0.83979 0.93821 0.91139 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 9.93 127.77 1.27 1.57 16 2 N -0.60 -8.87 2.86 -846.74 -2.42 -11.29 16 3 C 0.10 1.79 5.11 86.38 0.44 2.23 16 4 C 0.09 2.48 3.30 30.59 0.10 2.59 16 5 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 6 O -0.57 -18.04 11.95 -141.52 -1.69 -19.73 16 7 C 0.12 4.35 5.92 86.38 0.51 4.86 16 8 N -0.75 -35.27 5.30 -343.46 -1.82 -37.08 16 9 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 10 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 11 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 12 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 13 Si 0.96 46.76 27.74 68.60 1.90 48.66 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 16 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 17 C 0.50 9.65 6.18 87.66 0.54 10.19 16 18 O -0.56 -16.08 13.56 4.40 0.06 -16.02 16 19 C 0.11 1.44 2.75 44.70 0.12 1.57 16 20 H 0.14 0.66 7.29 -2.39 -0.02 0.64 16 21 C -0.11 -1.05 6.11 31.65 0.19 -0.86 16 22 C -0.14 -1.61 6.86 30.59 0.21 -1.40 16 23 C 0.50 11.21 8.03 87.88 0.71 11.92 16 24 O -0.58 -18.49 17.60 -3.05 -0.05 -18.55 16 25 N -0.61 -11.87 3.01 -822.85 -2.48 -14.35 16 26 C 0.10 2.06 9.59 127.77 1.23 3.29 16 27 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.10 0.06 5.19 -2.38 -0.01 0.05 16 29 H 0.08 0.42 8.07 -2.39 -0.02 0.40 16 30 H 0.07 1.67 7.42 -2.39 -0.02 1.65 16 31 H 0.12 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.38 11.91 8.75 -74.05 -0.65 11.26 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.37 16.96 5.40 -92.70 -0.50 16.46 16 36 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.07 1.05 7.90 -2.39 -0.02 1.04 16 38 H 0.15 0.06 7.08 -2.39 -0.02 0.04 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.04 1.10 7.49 -2.39 -0.02 1.08 16 42 H 0.07 1.41 7.93 -2.39 -0.02 1.40 16 43 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -86.71 350.43 0.30 -86.41 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.18 Total: 25.23 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.67 Total: 19.98 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -6.41 Total: -125.98 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -1.68 Total: -54.29 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -86.71 0.30 -86.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486293932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.608 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds