Wall clock time and date at job start Tue Mar 31 2020 03:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46490 * 120.00059 * 2 1 4 4 C 1.53006 * 109.47112 * 89.99985 * 3 2 1 5 5 H 1.08997 * 109.47149 * 304.99825 * 4 3 2 6 6 O 1.42897 * 109.47156 * 64.99860 * 4 3 2 7 7 C 1.53005 * 109.47234 * 185.00096 * 4 3 2 8 8 N 1.46500 * 109.46894 * 179.97438 * 7 4 3 9 9 C 1.36934 * 119.99410 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00720 * 0.02562 * 9 8 7 11 11 C 1.38821 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99469 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00062 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47472 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46898 * 119.99979 * 13 11 9 16 16 H 1.48492 * 109.47136 * 239.99743 * 13 11 9 17 17 C 1.34774 * 119.99652 * 179.97438 * 2 1 3 18 18 O 1.21287 * 119.99875 * 184.82455 * 17 2 1 19 19 C 1.50699 * 120.00222 * 4.81750 * 17 2 1 20 20 H 1.08993 * 110.44014 * 332.34538 * 19 17 2 21 21 C 1.54629 * 110.48706 * 209.65919 * 19 17 2 22 22 C 1.54484 * 101.76659 * 266.12259 * 21 19 17 23 23 N 1.46766 * 105.47217 * 334.58374 * 22 21 19 24 24 C 1.46498 * 124.35059 * 196.99787 * 23 22 21 25 25 C 1.34415 * 111.30005 * 17.01587 * 23 22 21 26 26 O 1.21281 * 124.94263 * 179.62722 * 25 23 22 27 27 H 1.08996 * 109.47095 * 264.79274 * 1 2 3 28 28 H 1.08996 * 109.46802 * 24.79577 * 1 2 3 29 29 H 1.09002 * 109.47004 * 144.79422 * 1 2 3 30 30 H 1.08998 * 109.47398 * 209.99555 * 3 2 1 31 31 H 1.09000 * 109.47288 * 329.99827 * 3 2 1 32 32 H 0.96695 * 114.00163 * 60.00285 * 6 4 3 33 33 H 1.09006 * 109.46904 * 299.99668 * 7 4 3 34 34 H 1.08992 * 109.47058 * 59.99472 * 7 4 3 35 35 H 0.96994 * 119.99868 * 0.02562 * 8 7 4 36 36 H 0.97007 * 119.99428 * 180.02562 * 12 11 9 37 37 H 1.08995 * 110.97400 * 24.23683 * 21 19 17 38 38 H 1.09002 * 110.96921 * 148.00800 * 21 19 17 39 39 H 1.09002 * 110.24751 * 215.59113 * 22 21 19 40 40 H 1.08998 * 110.24921 * 93.58054 * 22 21 19 41 41 H 1.09005 * 109.47213 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.46987 * 300.04648 * 24 23 22 43 43 H 1.09001 * 109.47452 * 60.04697 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 1.4426 5 1 1.5062 1.7549 1.9816 6 8 3.3209 0.7724 2.0814 7 6 3.1061 3.0938 1.4444 8 7 3.3497 3.5169 2.8257 9 6 3.9315 4.7306 3.0773 10 1 4.2105 5.3761 2.2577 11 6 4.1629 5.1314 4.3861 12 7 3.8224 4.3449 5.3851 13 14 4.9560 6.7874 4.7295 14 1 5.2394 7.4765 3.4449 15 1 4.0332 7.6188 5.5436 16 1 6.2251 6.5837 5.4731 17 6 2.1389 -1.1672 0.0005 18 8 3.3485 -1.1691 0.0889 19 6 1.3893 -2.4700 -0.1085 20 1 0.3835 -2.3657 0.2981 21 6 2.1562 -3.5982 0.6197 22 6 2.9800 -4.2140 -0.5329 23 7 2.2296 -3.9093 -1.7568 24 6 2.4318 -4.5857 -3.0405 25 6 1.3331 -2.9296 -1.5488 26 8 0.5872 -2.4799 -2.3927 27 1 -0.3633 -0.0933 1.0234 28 1 -0.3633 0.9329 -0.4310 29 1 -0.3633 -0.8397 -0.5925 30 1 3.1500 1.1383 -0.5137 31 1 1.6085 2.0283 -0.5139 32 1 4.1836 0.6810 1.6544 33 1 4.0525 3.0492 0.9054 34 1 2.4437 3.8091 0.9571 35 1 3.0994 2.9369 3.5618 36 1 3.9837 4.6251 6.2997 37 1 2.8092 -3.1908 1.3915 38 1 1.4666 -4.3299 1.0406 39 1 3.0650 -5.2927 -0.4014 40 1 3.9697 -3.7591 -0.5742 41 1 1.7489 -4.1705 -3.7816 42 1 3.4601 -4.4385 -3.3707 43 1 2.2367 -5.6518 -2.9242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486297732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:37 Heat of formation + Delta-G solvation = -93.578963 kcal Electronic energy + Delta-G solvation = -25075.982087 eV Core-core repulsion = 21350.148886 eV Total energy + Delta-G solvation = -3725.833201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.30512 -39.34292 -37.30935 -36.62013 -35.26357 -33.94319 -33.16911 -31.26544 -29.69339 -28.13130 -27.10695 -26.90195 -25.27168 -23.16567 -22.16557 -21.12818 -20.35071 -19.13924 -17.89593 -17.12284 -17.08473 -16.54670 -16.06109 -15.77350 -15.66061 -14.99948 -14.60049 -14.40488 -14.09971 -14.05222 -13.66733 -13.44035 -13.08514 -13.03394 -12.91253 -12.89431 -12.63619 -12.51858 -12.31741 -12.13353 -11.73083 -11.61267 -11.38028 -10.90548 -10.81281 -10.61510 -10.25727 -10.09471 -9.91985 -9.74152 -9.56244 -9.05545 -8.87202 -8.49004 -6.88580 -5.72134 -3.01274 2.02034 2.44437 2.69813 3.02450 3.45383 3.50510 3.53138 4.02446 4.05549 4.27594 4.56078 4.60807 4.75011 4.88057 4.92444 4.99762 5.04606 5.06946 5.18361 5.21207 5.31077 5.35290 5.42770 5.55980 5.57086 5.61837 5.69092 5.70950 5.76723 6.04526 6.10740 6.27372 6.44377 6.56325 6.67983 6.77915 7.26414 7.72095 7.76751 8.06236 8.25694 8.46434 9.57670 10.16179 10.52189 11.50360 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002861 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.479264 B = 9784.430778 C =10045.467536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.086 3.914 4 C 0.087 3.913 5 H 0.095 0.905 6 O -0.546 6.546 7 C 0.125 3.875 8 N -0.725 5.725 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.291 1.291 17 C 0.539 3.461 18 O -0.521 6.521 19 C -0.151 4.151 20 H 0.126 0.874 21 C -0.114 4.114 22 C 0.103 3.897 23 N -0.618 5.618 24 C 0.093 3.907 25 C 0.534 3.466 26 O -0.525 6.525 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.374 0.626 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.389 0.611 36 H 0.254 0.746 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -20.231 -14.815 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.113 0.887 6 O -0.350 6.350 7 C -0.004 4.004 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 C 0.324 3.676 18 O -0.397 6.397 19 C -0.175 4.175 20 H 0.144 0.856 21 C -0.152 4.152 22 C -0.019 4.019 23 N -0.352 5.352 24 C -0.048 4.048 25 C 0.320 3.680 26 O -0.401 6.401 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.221 0.779 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.223 0.777 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.849 -19.932 -14.935 25.832 hybrid contribution 0.671 0.882 0.124 1.115 sum -6.177 -19.051 -14.811 24.909 Atomic orbital electron populations 1.21949 0.79226 1.03917 1.02091 1.47615 1.07094 1.05805 1.72918 1.22331 0.98144 0.84343 0.98872 1.22470 0.94554 0.89059 0.91278 0.88691 1.86533 1.29157 1.62427 1.56918 1.21238 0.96990 0.92451 0.89688 1.42247 1.73803 1.20125 1.00815 1.19270 1.31961 0.94168 0.91816 0.91247 1.24765 1.02059 0.98602 0.95598 1.69699 1.53106 1.36817 0.98186 0.86113 0.78707 0.83604 0.77736 1.20595 1.21878 1.21849 1.19545 0.87484 0.84032 0.76503 1.90677 1.13607 1.86676 1.48729 1.22175 1.03497 0.95599 0.96266 0.85629 1.22563 0.99158 0.95739 0.97758 1.22179 0.96293 1.00891 0.82581 1.48093 1.37759 1.37636 1.11688 1.21590 1.02414 0.96848 0.83970 1.20207 0.79669 0.79190 0.88949 1.90734 1.40998 1.58788 1.49615 0.92148 0.90426 0.90598 0.89651 0.89505 0.77896 0.96212 0.95806 0.77657 0.93582 0.87607 0.89226 0.90087 0.89848 0.89897 0.91782 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.87 59.85 0.59 1.28 16 2 N -0.60 -7.68 2.86 -181.57 -0.52 -8.20 16 3 C 0.09 1.18 5.14 -4.04 -0.02 1.16 16 4 C 0.09 1.48 3.30 -26.73 -0.09 1.39 16 5 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 6 O -0.55 -10.29 11.82 -48.07 -0.57 -10.85 16 7 C 0.13 2.54 5.92 -4.04 -0.02 2.52 16 8 N -0.73 -19.06 5.49 -59.91 -0.33 -19.39 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 13 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 C 0.54 7.24 6.41 -10.99 -0.07 7.17 16 18 O -0.52 -8.24 14.27 -7.28 -0.10 -8.34 16 19 C -0.15 -1.56 2.47 -91.78 -0.23 -1.79 16 20 H 0.13 1.08 6.46 -51.93 -0.34 0.74 16 21 C -0.11 -0.91 6.40 -25.10 -0.16 -1.07 16 22 C 0.10 0.79 7.16 -3.12 -0.02 0.77 16 23 N -0.62 -5.87 3.33 -180.28 -0.60 -6.47 16 24 C 0.09 0.66 11.14 59.85 0.67 1.33 16 25 C 0.53 6.32 7.32 -10.86 -0.08 6.24 16 26 O -0.53 -7.73 16.91 5.56 0.09 -7.63 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 29 H 0.08 0.70 6.13 -51.93 -0.32 0.38 16 30 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 31 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.37 6.61 8.63 45.56 0.39 7.01 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.39 11.01 7.54 -40.82 -0.31 10.70 16 36 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.11 0.97 7.56 -51.93 -0.39 0.58 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -36.53 355.70 -6.55 -43.09 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.91 Total: 11.48 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 0.32 Total: 11.39 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.72 Total: -62.29 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.58 Total: -26.83 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.53 -6.55 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486297732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.492 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds