Wall clock time and date at job start Tue Mar 31 2020 04:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00075 * 2 1 4 4 H 1.09005 * 109.46576 * 329.99634 * 3 2 1 5 5 C 1.53000 * 109.47121 * 89.99468 * 3 2 1 6 6 C 1.52998 * 109.47218 * 209.99812 * 3 2 1 7 7 C 1.50704 * 109.47111 * 64.99832 * 6 3 2 8 8 O 1.21282 * 119.99722 * 0.02562 * 7 6 3 9 9 N 1.34768 * 120.00026 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00085 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47171 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47391 * 179.97438 * 11 10 9 13 13 C 1.46900 * 110.99818 * 294.30712 * 12 11 10 14 14 C 1.53240 * 109.33539 * 172.74204 * 13 12 11 15 15 N 1.47083 * 108.52117 * 53.83019 * 14 13 12 16 16 C 1.36936 * 120.87947 * 128.83574 * 15 14 13 17 17 H 1.08005 * 119.99968 * 206.55811 * 16 15 14 18 18 C 1.38808 * 120.00413 * 26.55685 * 16 15 14 19 19 N 1.31622 * 120.00077 * 17.02694 * 18 16 15 20 20 Si 1.86801 * 120.00222 * 197.02972 * 18 16 15 21 21 H 1.48507 * 109.47076 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47437 * 119.99908 * 20 18 16 23 23 H 1.48502 * 109.47198 * 240.00080 * 20 18 16 24 24 C 1.47076 * 118.23592 * 308.80786 * 15 14 13 25 25 C 1.46895 * 111.00360 * 169.99660 * 12 11 10 26 26 H 1.09003 * 109.47237 * 300.00556 * 1 2 3 27 27 H 1.09003 * 109.47050 * 60.00586 * 1 2 3 28 28 H 1.08997 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47620 * 300.00212 * 5 3 2 30 30 H 1.09003 * 109.46742 * 60.00604 * 5 3 2 31 31 H 1.09001 * 109.46666 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47337 * 184.99608 * 6 3 2 33 33 H 1.08998 * 109.46790 * 304.99927 * 6 3 2 34 34 H 0.97003 * 120.00534 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.47123 * 300.00021 * 10 9 7 36 36 H 1.08998 * 109.47120 * 60.00057 * 10 9 7 37 37 H 1.09003 * 109.47337 * 299.99856 * 11 10 9 38 38 H 1.09004 * 109.47168 * 59.99987 * 11 10 9 39 39 H 1.09005 * 109.49152 * 292.69666 * 13 12 11 40 40 H 1.08994 * 109.49430 * 52.78531 * 13 12 11 41 41 H 1.08995 * 109.63041 * 294.11430 * 14 13 12 42 42 H 1.09001 * 109.62358 * 173.53340 * 14 13 12 43 43 H 0.96998 * 120.00432 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.63337 * 291.47866 * 24 15 14 45 45 H 1.09004 * 109.78679 * 170.98853 * 24 15 14 46 46 H 1.09001 * 109.49733 * 307.22344 * 25 12 11 47 47 H 1.09006 * 109.48896 * 67.29824 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1417 0.9235 -2.1733 8 8 2.0187 0.7343 -2.5903 9 7 4.1953 0.8300 -3.0084 10 6 3.9842 0.4992 -4.4199 11 6 5.3329 0.4571 -5.1411 12 7 5.1213 0.1248 -6.5563 13 6 4.5951 -1.2388 -6.7039 14 6 4.2187 -1.4815 -8.1694 15 7 5.3857 -1.1709 -9.0091 16 6 5.8388 -2.0656 -9.9414 17 1 6.8772 -2.0568 -10.2383 18 6 4.9637 -2.9840 -10.5049 19 7 3.6641 -2.7962 -10.4138 20 14 5.6303 -4.4865 -11.3924 21 1 7.1147 -4.4649 -11.3559 22 1 5.1361 -5.7165 -10.7232 23 1 5.1701 -4.4721 -12.8043 24 6 6.0525 0.1265 -8.8212 25 6 6.3566 0.3061 -7.3301 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.2568 1.8015 1.9563 30 1 2.8829 1.0775 1.9563 31 1 2.6605 2.7674 1.4424 32 1 3.8427 2.2370 -0.6443 33 1 3.9931 0.5052 -0.2616 34 1 5.0935 0.9817 -2.6750 35 1 3.5003 -0.4744 -4.4964 36 1 3.3502 1.2572 -4.8798 37 1 5.8164 1.4310 -5.0646 38 1 5.9673 -0.3007 -4.6813 39 1 5.3564 -1.9572 -6.4001 40 1 3.7114 -1.3575 -6.0770 41 1 3.3861 -0.8346 -8.4456 42 1 3.9363 -2.5253 -8.3067 43 1 3.0525 -3.4381 -10.8073 44 1 5.3962 0.9280 -9.1601 45 1 6.9822 0.1493 -9.3899 46 1 6.7506 1.3076 -7.1572 47 1 7.0934 -0.4340 -7.0175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490484230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:44 Heat of formation + Delta-G solvation = -80.006088 kcal Electronic energy + Delta-G solvation = -24636.748874 eV Core-core repulsion = 21047.337332 eV Total energy + Delta-G solvation = -3589.411542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90671 -39.78005 -38.81331 -36.80834 -35.37328 -33.84556 -33.24629 -31.66725 -30.61475 -28.86881 -27.60131 -27.15030 -24.98584 -24.28555 -22.92217 -22.37771 -21.29802 -20.82079 -18.75827 -18.10003 -17.81423 -17.38384 -16.88242 -16.55712 -16.20418 -15.97803 -15.82948 -15.61275 -15.32584 -15.14113 -15.10696 -14.80729 -14.40007 -14.18080 -13.75906 -13.43462 -13.22371 -13.05028 -12.95417 -12.90168 -12.79133 -12.65126 -12.51621 -12.30751 -12.20915 -12.04280 -11.86629 -11.64727 -11.56894 -11.42906 -10.87812 -10.61277 -10.51136 -10.06084 -9.31210 -8.70444 -7.88827 -5.33957 1.45132 1.46415 1.57436 1.72242 2.11553 2.49763 2.90772 3.09639 3.26963 3.66268 3.77576 3.86446 3.91548 4.08572 4.23151 4.28952 4.33748 4.41050 4.46120 4.46905 4.53728 4.58822 4.63073 4.64494 4.70101 4.74816 4.81809 4.84049 4.91241 4.93295 4.99913 5.03732 5.07793 5.19628 5.33924 5.35793 5.44628 5.60137 5.65544 6.12838 6.22813 6.32164 6.35902 6.61841 7.11307 7.34191 7.82424 8.36777 9.18328 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.002513 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.818714 B =11138.063947 C =11862.463347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.089 3.911 4 H 0.053 0.947 5 C -0.166 4.166 6 C -0.131 4.131 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.717 5.717 10 C 0.131 3.869 11 C 0.055 3.945 12 N -0.544 5.544 13 C 0.051 3.949 14 C 0.185 3.815 15 N -0.615 5.615 16 C -0.261 4.261 17 H 0.071 0.929 18 C -0.056 4.056 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.141 3.859 25 C 0.058 3.942 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.418 0.582 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.023 0.977 40 H 0.072 0.928 41 H -0.005 1.005 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 11.463 25.051 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.324 6.324 3 C 0.031 3.969 4 H 0.072 0.928 5 C -0.224 4.224 6 C -0.171 4.171 7 C 0.293 3.707 8 O -0.463 6.463 9 N -0.371 5.371 10 C 0.006 3.994 11 C -0.073 4.073 12 N -0.269 5.269 13 C -0.079 4.079 14 C 0.059 3.941 15 N -0.339 5.339 16 C -0.391 4.391 17 H 0.089 0.911 18 C -0.251 4.251 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.015 3.985 25 C -0.071 4.071 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.137 0.863 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.013 0.987 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.120 0.880 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.030 11.398 24.478 27.078 hybrid contribution 0.362 -1.345 -0.662 1.542 sum 2.392 10.053 23.816 25.961 Atomic orbital electron populations 1.22737 0.80483 1.02875 0.99866 1.87837 1.20635 1.28739 1.95174 1.22020 0.93749 0.84723 0.96400 0.92842 1.22241 1.02914 1.02741 0.94489 1.21945 0.99123 1.06898 0.89117 1.21334 0.84076 0.75744 0.89518 1.90705 1.25480 1.51150 1.78961 1.45798 1.10621 1.71753 1.08917 1.21049 0.97570 0.99962 0.80855 1.22191 0.95271 1.02494 0.87300 1.61751 1.30280 1.25369 1.09510 1.22594 0.98543 0.88446 0.98290 1.20591 0.87940 0.98665 0.86883 1.44434 1.33697 1.15119 1.40693 1.19592 0.93082 1.10505 1.15953 0.91132 1.25854 0.95455 1.03641 1.00143 1.70210 1.02120 1.36580 1.49543 0.85168 0.78314 0.79323 0.77405 1.18825 1.21751 1.21917 1.21171 0.95994 0.86791 0.94499 1.22477 0.89400 1.01254 0.93957 0.92544 0.95230 0.89678 0.92292 0.91245 0.89297 0.83856 0.86306 0.74503 0.93891 0.92538 0.87730 0.93634 0.95895 0.90948 0.98696 0.92680 0.94124 0.96739 0.91739 0.87965 0.95309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.82 113.37 1.23 1.95 16 2 O -0.40 -9.39 9.58 -135.20 -1.30 -10.69 16 3 C 0.09 1.49 2.27 30.59 0.07 1.56 16 4 H 0.05 1.03 7.60 -2.38 -0.02 1.01 16 5 C -0.17 -1.67 9.53 71.98 0.69 -0.98 16 6 C -0.13 -1.72 5.41 29.85 0.16 -1.56 16 7 C 0.51 11.52 7.71 87.66 0.68 12.19 16 8 O -0.58 -19.63 15.42 10.74 0.17 -19.46 16 9 N -0.72 -13.59 5.56 -463.07 -2.57 -16.17 16 10 C 0.13 3.38 5.61 86.38 0.48 3.87 16 11 C 0.06 1.31 5.08 86.30 0.44 1.75 16 12 N -0.54 -18.23 4.63 -895.25 -4.14 -22.38 16 13 C 0.05 2.02 5.46 86.38 0.47 2.49 16 14 C 0.19 9.51 5.42 86.35 0.47 9.98 16 15 N -0.62 -32.09 3.04 -698.14 -2.12 -34.21 16 16 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 18 C -0.06 -3.21 4.93 84.86 0.42 -2.79 16 19 N -0.94 -57.46 11.15 21.65 0.24 -57.22 16 20 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.14 5.91 6.69 86.35 0.58 6.49 16 25 C 0.06 1.89 5.62 86.38 0.49 2.37 16 26 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 27 H 0.03 0.67 8.09 -2.39 -0.02 0.65 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.42 4.45 8.47 -92.71 -0.79 3.67 16 35 H 0.04 1.36 6.40 -2.39 -0.02 1.34 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.89 7.97 -2.39 -0.02 1.87 16 38 H 0.05 1.00 8.12 -2.38 -0.02 0.99 16 39 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 2.76 6.16 -2.39 -0.01 2.74 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.05 3.17 6.12 -2.39 -0.01 3.15 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 2.55 7.96 -2.38 -0.02 2.53 16 46 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 47 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -77.29 372.69 -0.57 -77.86 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.15 Total: 11.03 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.97 Total: 23.45 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -8.60 Total: -129.97 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.13 Total: -30.15 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.29 -0.57 -77.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490484230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.147 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds