Wall clock time and date at job start Tue Mar 31 2020 03:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.44765 * 111.00082 * 2 1 4 4 C 1.54401 * 109.82838 * 217.76157 * 3 2 1 5 5 N 1.47783 * 111.34364 * 320.27800 * 4 3 2 6 6 C 1.34779 * 118.54373 * 137.99108 * 5 4 3 7 7 O 1.21590 * 120.00157 * 4.98532 * 6 5 4 8 8 N 1.34771 * 120.00183 * 184.97689 * 6 5 4 9 9 C 1.46505 * 120.00474 * 175.03901 * 8 6 5 10 10 C 1.52995 * 109.47174 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46842 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99992 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99863 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99829 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99969 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47145 * 89.99457 * 15 13 11 17 17 H 1.48498 * 109.46940 * 329.99358 * 15 13 11 18 18 H 1.48495 * 109.46788 * 209.99666 * 15 13 11 19 19 C 1.44666 * 122.90873 * 317.72366 * 5 4 3 20 20 C 1.54946 * 109.52430 * 89.35043 * 19 5 4 21 21 H 1.08999 * 109.42272 * 50.55065 * 20 19 5 22 22 C 1.50706 * 109.42812 * 170.43645 * 20 19 5 23 23 O 1.20823 * 119.99579 * 119.99908 * 22 20 19 24 24 O 1.34224 * 120.00211 * 300.00962 * 22 20 19 25 25 C 1.46271 * 111.00017 * 123.49002 * 2 1 3 26 26 H 1.09006 * 109.47055 * 296.51183 * 1 2 3 27 27 H 1.09000 * 109.47079 * 56.50787 * 1 2 3 28 28 H 1.08996 * 109.46890 * 176.50904 * 1 2 3 29 29 H 1.09001 * 109.43408 * 337.92012 * 3 2 1 30 30 H 1.09003 * 109.43809 * 97.79081 * 3 2 1 31 31 H 1.09007 * 109.26579 * 199.75320 * 4 3 2 32 32 H 1.08996 * 109.08037 * 80.69320 * 4 3 2 33 33 H 0.97002 * 119.99544 * 355.04348 * 8 6 5 34 34 H 1.08998 * 109.46515 * 60.00003 * 9 8 6 35 35 H 1.08998 * 109.46656 * 300.00692 * 9 8 6 36 36 H 1.09002 * 109.47540 * 59.99887 * 10 9 8 37 37 H 1.09005 * 109.47189 * 299.99450 * 10 9 8 38 38 H 0.97003 * 120.00112 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.46383 * 209.37310 * 19 5 4 40 40 H 1.09002 * 109.46138 * 329.34447 * 19 5 4 41 41 H 0.96706 * 116.99972 * 179.97438 * 24 22 20 42 42 H 1.09005 * 108.50066 * 27.29069 * 25 2 1 43 43 H 1.08997 * 108.50207 * 269.82734 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9878 1.3515 0.0000 4 6 3.2475 1.4289 -0.8895 5 7 4.0974 0.2313 -0.7238 6 6 4.6482 -0.3243 -1.8213 7 8 4.5168 0.2112 -2.9050 8 7 5.3449 -1.4733 -1.7175 9 6 5.8510 -2.1346 -2.9228 10 6 6.6000 -3.4092 -2.5289 11 6 7.1200 -4.0898 -3.7689 12 1 6.9351 -3.6563 -4.7407 13 6 7.8326 -5.2654 -3.6627 14 7 8.2860 -5.8595 -4.7448 15 14 8.1530 -6.0147 -1.9818 16 1 7.0476 -6.9437 -1.6352 17 1 8.2296 -4.9352 -0.9651 18 1 9.4366 -6.7609 -2.0091 19 6 4.3687 -0.3678 0.5647 20 6 3.2817 -1.4250 0.8834 21 1 3.1751 -2.1021 0.0359 22 6 3.6885 -2.2100 2.1039 23 8 2.9846 -2.2078 3.0859 24 8 4.8330 -2.9114 2.1002 25 6 1.9932 -0.7535 1.1389 26 1 -0.3633 0.4588 0.9196 27 1 -0.3633 0.5671 -0.8570 28 1 -0.3633 -1.0257 -0.0626 29 1 1.2285 2.0314 -0.3864 30 1 2.2479 1.6402 1.0184 31 1 3.8238 2.3142 -0.6205 32 1 2.9426 1.5076 -1.9329 33 1 5.5113 -1.8624 -0.8446 34 1 6.5288 -1.4622 -3.4487 35 1 5.0156 -2.3910 -3.5744 36 1 5.9218 -4.0814 -2.0032 37 1 7.4354 -3.1531 -1.8772 38 1 8.7870 -6.6867 -4.6701 39 1 5.3471 -0.8478 0.5433 40 1 4.3601 0.4049 1.3335 41 1 5.0519 -3.3987 2.9062 42 1 1.2595 -1.5086 1.4212 43 1 2.1201 -0.0690 1.9776 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610135788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:59 Heat of formation + Delta-G solvation = -127.581922 kcal Electronic energy + Delta-G solvation = -25636.311401 eV Core-core repulsion = 21909.003721 eV Total energy + Delta-G solvation = -3727.307680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04500 -41.01341 -39.31460 -37.16732 -36.67386 -36.32961 -34.76115 -34.07691 -32.04667 -30.08257 -27.61463 -26.76583 -26.43459 -24.48807 -22.82359 -22.42193 -21.29083 -20.68167 -19.18743 -19.09116 -18.92883 -18.07961 -17.76371 -16.85235 -16.46635 -16.22738 -16.20640 -16.01738 -15.48621 -15.33779 -15.09917 -14.70472 -14.66423 -14.46199 -14.08845 -13.99626 -13.58546 -13.25861 -13.00364 -12.89501 -12.64809 -12.56102 -12.49504 -12.14868 -12.11570 -12.01979 -11.93045 -11.72340 -11.62796 -11.46820 -11.12152 -10.75146 -10.13617 -9.50761 -9.30792 -8.26282 -6.33215 1.07181 1.41902 1.44699 1.56359 1.59521 2.00834 2.19765 2.40591 2.98333 3.08808 3.08986 3.50552 3.64254 3.95319 4.02174 4.20016 4.22872 4.24585 4.38463 4.44244 4.49607 4.54579 4.59985 4.72379 4.79261 4.80254 4.80932 4.85687 4.98336 5.04088 5.21455 5.46373 5.48192 5.56529 5.59610 5.71213 5.89741 6.04335 6.15718 6.27175 6.73805 6.95604 7.03035 7.31192 7.61105 8.90576 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.004445 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.688896 B = 6297.584987 C = 7477.614002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.556 5.556 3 C 0.047 3.953 4 C 0.133 3.867 5 N -0.604 5.604 6 C 0.699 3.301 7 O -0.635 6.635 8 N -0.734 5.734 9 C 0.164 3.836 10 C -0.009 4.009 11 C -0.537 4.537 12 H 0.028 0.972 13 C 0.005 3.995 14 N -0.952 5.952 15 Si 0.957 3.043 16 H -0.266 1.266 17 H -0.234 1.234 18 H -0.288 1.288 19 C 0.126 3.874 20 C -0.100 4.100 21 H 0.107 0.893 22 C 0.502 3.498 23 O -0.540 6.540 24 O -0.507 6.507 25 C 0.076 3.924 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.432 0.568 42 H 0.070 0.930 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 13.298 21.044 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.280 5.280 3 C -0.082 4.082 4 C 0.011 3.989 5 N -0.339 5.339 6 C 0.400 3.600 7 O -0.516 6.516 8 N -0.390 5.390 9 C 0.040 3.960 10 C -0.047 4.047 11 C -0.576 4.576 12 H 0.047 0.953 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.780 3.220 16 H -0.191 1.191 17 H -0.157 1.157 18 H -0.214 1.214 19 C 0.001 3.999 20 C -0.121 4.121 21 H 0.125 0.875 22 C 0.344 3.656 23 O -0.430 6.430 24 O -0.321 6.321 25 C -0.052 4.052 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.244 0.756 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.295 0.705 42 H 0.089 0.911 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.505 13.550 19.694 27.456 hybrid contribution 0.238 -0.985 1.347 1.685 sum -13.267 12.566 21.040 27.868 Atomic orbital electron populations 1.22455 0.84927 1.02640 1.01437 1.60541 1.09148 1.14701 1.43607 1.22537 0.96455 0.89448 0.99745 1.22052 0.90416 0.85120 1.01350 1.46698 1.51481 1.31223 1.04519 1.16165 0.78760 0.80723 0.84327 1.90860 1.67244 1.65203 1.28320 1.45352 1.58404 1.24466 1.10822 1.20865 0.96340 0.93202 0.85606 1.19619 0.96021 0.92842 0.96243 1.21254 1.34830 1.08144 0.93332 0.95313 1.26063 0.94535 0.97051 1.01558 1.70079 1.38471 1.19367 1.31277 0.85560 0.77699 0.79291 0.79489 1.19072 1.15668 1.21364 1.21545 0.96640 0.95696 0.86033 1.20824 0.98376 0.98111 0.94807 0.87487 1.22946 0.78105 0.76402 0.88126 1.90722 1.53625 1.62394 1.36296 1.84516 1.39490 1.60155 1.47962 1.20627 0.94765 0.98443 0.91414 0.94148 0.90421 0.91695 0.88104 0.91709 0.89894 0.91367 0.75620 0.94065 0.94206 0.94798 0.94527 0.92394 0.88849 0.87124 0.70543 0.91145 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.17 127.69 1.17 1.61 16 2 N -0.56 -9.48 4.42 -937.46 -4.14 -13.63 16 3 C 0.05 0.64 5.53 87.18 0.48 1.12 16 4 C 0.13 2.58 6.46 86.61 0.56 3.14 16 5 N -0.60 -14.07 2.53 -834.42 -2.11 -16.18 16 6 C 0.70 23.46 8.20 179.06 1.47 24.92 16 7 O -0.63 -27.18 15.66 -4.00 -0.06 -27.25 16 8 N -0.73 -24.27 5.39 -478.54 -2.58 -26.85 16 9 C 0.16 6.92 5.62 86.38 0.49 7.41 16 10 C -0.01 -0.42 4.16 29.85 0.12 -0.30 16 11 C -0.54 -30.86 9.66 25.60 0.25 -30.61 16 12 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 13 C 0.00 0.28 5.47 84.66 0.46 0.74 16 14 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 15 Si 0.96 42.17 27.47 68.60 1.88 44.05 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.23 -9.07 6.54 99.48 0.65 -8.42 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 C 0.13 2.11 4.43 87.39 0.39 2.50 16 20 C -0.10 -1.76 2.78 -12.58 -0.03 -1.80 16 21 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 22 C 0.50 8.74 7.61 71.24 0.54 9.28 16 23 O -0.54 -11.91 16.59 21.97 0.36 -11.54 16 24 O -0.51 -7.05 13.18 -51.36 -0.68 -7.72 16 25 C 0.08 1.26 3.60 84.71 0.30 1.56 16 26 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.08 0.96 7.97 -2.39 -0.02 0.94 16 28 H 0.06 0.93 8.03 -2.39 -0.02 0.91 16 29 H 0.10 1.04 7.53 -2.39 -0.02 1.02 16 30 H 0.06 0.66 7.14 -2.39 -0.02 0.65 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.73 7.03 -2.39 -0.02 1.72 16 33 H 0.41 11.01 6.12 -92.71 -0.57 10.44 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 37 H 0.04 1.55 7.20 -2.38 -0.02 1.53 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.09 1.54 6.07 -2.38 -0.01 1.52 16 40 H 0.11 1.30 8.09 -2.39 -0.02 1.28 16 41 H 0.43 2.45 9.10 -74.05 -0.67 1.78 16 42 H 0.07 1.27 7.38 -2.38 -0.02 1.25 16 43 H 0.06 0.84 7.10 -2.39 -0.02 0.82 16 Total: -1.00 -79.07 345.96 -1.08 -80.16 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.26 Total: 18.65 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 6.20 Total: 19.57 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -8.53 Total: -115.91 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.38 Total: -46.51 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -79.07 -1.08 -80.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610135788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.426 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds