Wall clock time and date at job start Tue Mar 31 2020 04:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 N 1.46909 * 109.47249 * 120.00161 * 2 1 3 5 5 C 1.48534 * 110.99974 * 57.59865 * 4 2 1 6 6 C 1.54933 * 103.22311 * 159.72498 * 5 4 2 7 7 C 1.54602 * 102.92249 * 322.58587 * 6 5 4 8 8 C 1.47902 * 111.00019 * 174.99965 * 4 2 1 9 9 H 1.08996 * 110.08168 * 333.60188 * 8 4 2 10 10 C 1.50699 * 109.91704 * 94.80109 * 8 4 2 11 11 O 1.21290 * 120.00059 * 359.04056 * 10 8 4 12 12 N 1.34770 * 120.00070 * 179.04331 * 10 8 4 13 13 C 1.46500 * 120.00202 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47365 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47289 * 59.99779 * 14 13 12 16 16 O 1.42903 * 109.47288 * 300.00243 * 14 13 12 17 17 C 1.53002 * 109.47364 * 180.02562 * 14 13 12 18 18 N 1.46506 * 109.47042 * 185.00319 * 17 14 13 19 19 C 1.36929 * 119.99807 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00341 * 0.27647 * 19 18 17 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99884 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99909 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99659 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99370 * 23 21 19 27 27 H 1.09002 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46979 * 300.00373 * 1 2 3 29 29 H 1.09000 * 109.47205 * 59.99713 * 1 2 3 30 30 H 1.09001 * 109.46979 * 239.99627 * 2 1 3 31 31 H 1.09005 * 109.47128 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47005 * 299.99523 * 3 2 1 33 33 H 1.09001 * 109.47433 * 59.99905 * 3 2 1 34 34 H 1.08995 * 110.66479 * 41.29059 * 5 4 2 35 35 H 1.08995 * 110.66464 * 278.15952 * 5 4 2 36 36 H 1.09006 * 110.72183 * 204.22827 * 6 5 4 37 37 H 1.09000 * 110.73037 * 80.94571 * 6 5 4 38 38 H 1.08999 * 110.30602 * 263.04463 * 7 6 5 39 39 H 1.09003 * 110.38890 * 140.92134 * 7 6 5 40 40 H 0.97003 * 120.00226 * 359.97438 * 12 10 8 41 41 H 1.09001 * 109.47218 * 60.00177 * 13 12 10 42 42 H 1.08999 * 109.47229 * 300.00006 * 13 12 10 43 43 H 0.96702 * 113.99511 * 299.99649 * 16 14 13 44 44 H 1.08992 * 109.46974 * 64.99816 * 17 14 13 45 45 H 1.09000 * 109.46986 * 304.99880 * 17 14 13 46 46 H 0.96999 * 120.00076 * 359.97438 * 18 17 14 47 47 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 1.4966 -2.0813 1.2632 6 6 2.4843 -2.7883 2.2250 7 6 3.8444 -2.1562 1.8498 8 6 3.4932 -0.8174 1.1750 9 1 3.8520 -0.8149 0.1457 10 6 4.1177 0.3218 1.9387 11 8 3.4144 1.1718 2.4426 12 7 5.4577 0.3962 2.0617 13 6 6.0649 1.5040 2.8036 14 6 7.5872 1.3515 2.7927 15 1 7.9462 1.3635 1.7636 16 8 7.9463 0.1127 3.4079 17 6 8.2212 2.5081 3.5681 18 7 9.6799 2.4288 3.4572 19 6 10.4654 3.3655 4.0741 20 1 10.0097 4.1602 4.6462 21 6 11.8475 3.2901 3.9695 22 7 12.6025 4.1902 4.5629 23 14 12.6358 1.9111 2.9864 24 1 12.8010 2.3413 1.5748 25 1 13.9652 1.5887 3.5644 26 1 11.7681 0.7072 3.0388 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5196 -2.5465 0.2778 35 1 0.4863 -2.0934 1.6720 36 1 2.4956 -3.8632 2.0445 37 1 2.2323 -2.5731 3.2634 38 1 4.3821 -2.8008 1.1545 39 1 4.4426 -1.9836 2.7445 40 1 6.0203 -0.2837 1.6589 41 1 5.7063 1.4916 3.8329 42 1 5.7906 2.4489 2.3346 43 1 7.6581 0.0321 4.3274 44 1 7.9325 2.4436 4.6171 45 1 7.8764 3.4555 3.1539 46 1 10.0893 1.7127 2.9467 47 1 13.5683 4.1377 4.4894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667820604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:38 Heat of formation + Delta-G solvation = -69.675823 kcal Electronic energy + Delta-G solvation = -25060.506834 eV Core-core repulsion = 21471.543245 eV Total energy + Delta-G solvation = -3588.963589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61249 -38.66269 -37.50083 -34.95074 -34.38491 -34.02579 -31.52564 -30.52034 -29.61270 -29.03342 -27.14244 -25.59894 -23.31694 -22.12872 -21.61218 -21.45019 -20.62455 -19.86505 -17.80800 -17.64548 -16.77561 -16.31492 -16.05168 -15.76205 -14.99005 -14.73502 -14.56140 -14.38401 -14.14138 -13.68598 -13.66521 -13.46552 -13.19947 -12.99069 -12.77104 -12.54752 -12.41422 -12.25605 -12.00594 -11.77046 -11.61006 -11.49504 -11.31184 -11.27584 -11.11359 -11.07340 -10.87961 -10.80461 -10.17989 -9.94552 -9.67654 -9.54162 -9.07288 -8.93441 -8.70046 -7.26905 -5.78518 -3.14783 2.63441 2.90437 3.38426 3.43987 3.45808 3.69298 4.21063 4.22689 4.49712 4.54536 4.59107 4.69038 4.72432 4.77265 4.82911 4.85685 5.04451 5.11044 5.15656 5.25654 5.38958 5.43132 5.47135 5.48317 5.50766 5.55880 5.58702 5.66339 5.67986 5.72103 5.77948 5.78627 5.87602 5.94030 6.19938 6.37915 6.42054 6.50418 6.54971 6.75863 7.49398 7.76921 7.97233 8.26301 8.39992 9.19306 9.91246 10.10885 11.39552 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002703 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.958569 B =10357.093931 C =10809.122156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.139 4.139 4 N -0.488 5.488 5 C 0.036 3.964 6 C -0.122 4.122 7 C -0.124 4.124 8 C 0.049 3.951 9 H 0.076 0.924 10 C 0.519 3.481 11 O -0.515 6.515 12 N -0.727 5.727 13 C 0.093 3.907 14 C 0.085 3.915 15 H 0.103 0.897 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.273 1.273 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.402 0.598 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.376 0.624 44 H 0.032 0.968 45 H 0.038 0.962 46 H 0.365 0.635 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.333 -15.457 -10.213 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.197 4.197 4 N -0.213 5.213 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.163 4.163 8 C -0.064 4.064 9 H 0.093 0.907 10 C 0.303 3.697 11 O -0.389 6.389 12 N -0.381 5.381 13 C -0.031 4.031 14 C 0.025 3.975 15 H 0.121 0.879 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.223 0.777 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.199 0.801 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.708 -14.400 -9.851 30.247 hybrid contribution 1.094 -1.442 -1.074 2.104 sum -23.614 -15.841 -10.924 30.461 Atomic orbital electron populations 1.21847 0.93962 1.01804 1.02515 1.21827 0.96047 0.95808 0.90025 1.21852 1.00691 0.94823 1.02307 1.64444 1.03439 1.15009 1.38443 1.23247 0.99619 0.87882 0.98375 1.22488 0.93777 0.99313 1.00472 1.22424 0.98542 0.93962 1.01360 1.22308 0.90581 0.94394 0.99081 0.90657 1.20308 0.81845 0.86631 0.80916 1.90699 1.61340 1.40135 1.46734 1.45918 1.06653 1.28852 1.56662 1.22013 0.93517 0.90276 0.97339 1.22447 0.90998 0.85439 0.98567 0.87885 1.86542 1.82147 1.36775 1.30738 1.21179 0.85821 0.95258 0.97450 1.42577 1.00395 1.32944 1.63667 1.19047 0.88384 1.04834 1.25486 0.89252 1.24679 0.95923 0.98284 1.00187 1.69709 1.04308 1.36242 1.47829 0.86533 0.78960 0.82912 0.80159 1.21117 1.21736 1.19861 0.92771 0.91471 0.92169 0.94388 0.93351 0.92815 0.90613 0.93649 0.89546 0.90638 0.90399 0.90423 0.90126 0.76375 0.91017 0.90464 0.77699 0.95047 0.94464 0.80130 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.99 37.16 0.33 -0.74 16 2 C 0.07 0.64 2.38 -67.71 -0.16 0.48 16 3 C -0.14 -1.44 7.93 37.16 0.29 -1.15 16 4 N -0.49 -4.78 4.33 -216.04 -0.94 -5.71 16 5 C 0.04 0.27 5.31 -1.90 -0.01 0.26 16 6 C -0.12 -0.84 7.06 -24.87 -0.18 -1.01 16 7 C -0.12 -0.93 6.47 -25.37 -0.16 -1.09 16 8 C 0.05 0.45 2.37 -67.80 -0.16 0.29 16 9 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16 10 C 0.52 6.26 5.60 -10.99 -0.06 6.20 16 11 O -0.52 -8.13 14.51 5.55 0.08 -8.05 16 12 N -0.73 -7.89 5.31 -60.29 -0.32 -8.21 16 13 C 0.09 1.14 5.34 -4.04 -0.02 1.12 16 14 C 0.09 1.19 3.09 -26.73 -0.08 1.11 16 15 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 16 O -0.56 -7.85 13.03 -35.23 -0.46 -8.31 16 17 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 18 N -0.75 -17.71 5.35 -59.91 -0.32 -18.03 16 19 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 20 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 23 Si 0.88 22.26 27.74 -169.99 -4.71 17.55 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 H -0.27 -6.54 6.52 56.52 0.37 -6.17 16 27 H 0.05 0.35 6.88 -51.93 -0.36 -0.01 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.31 7.96 -51.93 -0.41 -0.10 16 31 H 0.05 0.55 6.22 -51.93 -0.32 0.23 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 34 H 0.05 0.29 8.02 -51.93 -0.42 -0.13 16 35 H 0.09 0.60 7.65 -51.93 -0.40 0.20 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.66 7.62 -51.93 -0.40 0.26 16 40 H 0.40 3.73 8.31 -40.82 -0.34 3.39 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.38 4.37 9.04 45.56 0.41 4.78 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.37 8.57 5.53 -40.82 -0.23 8.35 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -34.40 369.76 -8.30 -42.69 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.49 Total: 10.50 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.49 Total: 0.70 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.80 Total: -60.65 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.38 Total: -16.36 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.40 -8.30 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667820604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.984 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds