Wall clock time and date at job start Tue Mar 31 2020 03:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33355 * 117.94362 * 2 1 4 4 O 1.21281 * 118.24800 * 2.19660 * 3 2 1 5 5 C 1.50183 * 123.50397 * 182.24498 * 3 2 1 6 6 C 1.53063 * 109.88769 * 342.37540 * 5 3 2 7 7 C 1.53347 * 108.42518 * 48.91630 * 6 5 3 8 8 C 1.45749 * 117.94834 * 179.97438 * 2 1 3 9 9 H 1.08991 * 109.30469 * 281.24481 * 8 2 1 10 10 C 1.50706 * 109.29647 * 40.61899 * 8 2 1 11 11 O 1.21275 * 120.00376 * 21.03358 * 10 8 2 12 12 N 1.34771 * 119.99657 * 201.02974 * 10 8 2 13 13 C 1.46501 * 120.00059 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47246 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46586 * 60.00789 * 14 13 12 16 16 O 1.42894 * 109.47556 * 300.00284 * 14 13 12 17 17 C 1.53004 * 109.47079 * 180.02562 * 14 13 12 18 18 N 1.46494 * 109.47371 * 185.00282 * 17 14 13 19 19 C 1.36931 * 120.00304 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00058 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99639 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99883 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46750 * 90.00427 * 23 21 19 25 25 H 1.48499 * 109.46999 * 210.00283 * 23 21 19 26 26 H 1.48495 * 109.47229 * 330.00389 * 23 21 19 27 27 H 1.08992 * 109.47120 * 270.02622 * 1 2 3 28 28 H 1.09003 * 109.47026 * 30.02654 * 1 2 3 29 29 H 1.08999 * 109.46436 * 150.02258 * 1 2 3 30 30 H 1.09002 * 109.38684 * 222.25705 * 5 3 2 31 31 H 1.09001 * 109.41595 * 102.51726 * 5 3 2 32 32 H 1.09007 * 109.67406 * 289.18553 * 6 5 3 33 33 H 1.09000 * 109.67703 * 168.65377 * 6 5 3 34 34 H 1.08997 * 109.59875 * 52.22698 * 7 6 5 35 35 H 1.09001 * 109.60114 * 172.71165 * 7 6 5 36 36 H 0.96997 * 120.00468 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.47363 * 300.00922 * 13 12 10 38 38 H 1.09002 * 109.46699 * 60.00520 * 13 12 10 39 39 H 0.96703 * 113.99821 * 300.00439 * 16 14 13 40 40 H 1.09004 * 109.47182 * 305.00729 * 17 14 13 41 41 H 1.09001 * 109.46736 * 65.00216 * 17 14 13 42 42 H 0.97001 * 119.99703 * 359.97438 * 18 17 14 43 43 H 0.96999 * 119.99493 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0900 1.1781 0.0000 4 8 1.4158 2.1854 0.0409 5 6 3.5839 1.3240 -0.0491 6 6 4.2493 0.0016 0.3397 7 6 3.5949 -1.1260 -0.4676 8 6 2.1481 -1.2875 0.0006 9 1 2.1398 -1.6994 1.0096 10 6 1.4278 -2.2339 -0.9250 11 8 0.7039 -1.7979 -1.7949 12 7 1.5882 -3.5648 -0.7861 13 6 0.8875 -4.4848 -1.6855 14 6 1.2396 -5.9270 -1.3152 15 1 0.9359 -6.1225 -0.2869 16 8 2.6499 -6.1203 -1.4403 17 6 0.5084 -6.8879 -2.2549 18 7 0.7499 -8.2679 -1.8270 19 6 0.1930 -9.3078 -2.5222 20 1 -0.4247 -9.1107 -3.3859 21 6 0.4215 -10.6156 -2.1163 22 7 -0.1135 -11.6151 -2.7850 23 14 1.4893 -10.9566 -0.6221 24 1 0.6403 -10.9897 0.5958 25 1 2.1685 -12.2667 -0.7878 26 1 2.5078 -9.8846 -0.4865 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3632 -0.8902 -0.5135 30 1 3.8943 2.1038 0.6465 31 1 3.8881 1.5994 -1.0589 32 1 4.1087 -0.1807 1.4052 33 1 5.3143 0.0457 0.1119 34 1 3.6102 -0.8731 -1.5277 35 1 4.1385 -2.0564 -0.3033 36 1 2.1669 -3.9136 -0.0902 37 1 -0.1882 -4.3377 -1.5898 38 1 1.1909 -4.2890 -2.7139 39 1 2.9909 -5.9630 -2.3315 40 1 -0.5614 -6.6805 -2.2262 41 1 0.8774 -6.7529 -3.2717 42 1 1.3050 -8.4451 -1.0515 43 1 0.0465 -12.5289 -2.5016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667929582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:06 Heat of formation + Delta-G solvation = -102.032258 kcal Electronic energy + Delta-G solvation = -24523.890089 eV Core-core repulsion = 20797.690326 eV Total energy + Delta-G solvation = -3726.199763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37218 -39.66590 -37.97378 -36.59586 -34.90232 -34.34789 -34.14159 -31.62607 -30.85504 -29.31944 -27.44307 -26.21500 -24.87194 -22.73942 -22.36838 -21.66654 -20.85561 -19.12345 -18.09909 -17.77896 -17.13675 -16.84684 -16.40466 -16.13073 -15.88326 -15.15623 -15.11207 -14.69487 -14.60602 -14.36704 -13.96073 -13.89170 -13.66551 -13.35728 -13.09621 -12.67671 -12.57047 -12.47574 -12.21743 -12.08330 -11.90268 -11.52927 -11.45804 -11.37210 -10.94378 -10.90937 -10.46755 -10.23571 -10.02826 -9.84607 -9.63203 -9.39731 -8.99998 -8.98295 -7.32657 -5.83126 -3.20002 2.10396 2.24039 2.53432 2.90399 3.34496 3.39270 3.42240 4.04949 4.06573 4.11741 4.25161 4.41261 4.48623 4.54432 4.57046 4.66914 4.86936 4.99512 5.14328 5.16218 5.23671 5.32769 5.34896 5.35614 5.44101 5.45046 5.55631 5.59908 5.66513 5.75470 5.76665 5.96544 6.09672 6.33267 6.45142 7.01670 7.15262 7.64861 7.78036 7.85715 7.91780 8.35121 9.14099 9.85894 10.04967 11.34819 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.002606 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.978629 B =10739.813821 C =11171.876472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.586 5.586 3 C 0.518 3.482 4 O -0.551 6.551 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.128 4.128 8 C 0.128 3.872 9 H 0.099 0.901 10 C 0.501 3.499 11 O -0.525 6.525 12 N -0.714 5.714 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.105 0.895 16 O -0.556 6.556 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.407 0.593 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.376 0.624 40 H 0.038 0.962 41 H 0.032 0.968 42 H 0.366 0.634 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.023 23.667 8.165 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.176 4.176 6 C -0.159 4.159 7 C -0.166 4.166 8 C 0.020 3.980 9 H 0.116 0.884 10 C 0.286 3.714 11 O -0.401 6.401 12 N -0.367 5.367 13 C -0.035 4.035 14 C 0.025 3.975 15 H 0.123 0.877 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.380 4.380 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.199 1.199 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.242 0.758 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.199 0.801 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.962 24.229 8.004 27.045 hybrid contribution 0.908 -0.628 0.687 1.301 sum 9.870 23.601 8.691 27.018 Atomic orbital electron populations 1.22050 0.78736 1.05454 1.01557 1.46898 1.07923 1.04455 1.72612 1.20161 0.90981 0.82396 0.75762 1.90725 1.66568 1.35385 1.50260 1.21695 0.90925 0.99808 1.05139 1.21663 1.00627 0.92974 1.00629 1.21884 0.91849 1.01200 1.01670 1.20922 0.93300 0.84192 0.99592 0.88384 1.20703 0.82288 0.83102 0.85352 1.90720 1.38089 1.76965 1.34346 1.45904 1.49069 1.05344 1.36336 1.22132 0.98048 0.89138 0.94206 1.22459 0.82001 0.91255 1.01767 0.87679 1.86548 1.21330 1.92684 1.35603 1.21172 0.97751 0.85265 0.95519 1.42563 1.61153 1.00773 1.35065 1.19032 1.24807 0.84783 1.09346 0.89255 1.24687 1.00094 0.95376 0.98843 1.69707 1.48386 0.98475 1.41390 0.86530 0.80889 0.77473 0.83629 1.21086 1.21707 1.19873 0.93124 0.90263 0.88946 0.87921 0.88033 0.90633 0.89673 0.90025 0.88624 0.75819 0.90046 0.90660 0.77618 0.94442 0.95037 0.80105 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 9.59 59.85 0.57 1.27 16 2 N -0.59 -5.85 2.96 -176.51 -0.52 -6.38 16 3 C 0.52 5.59 7.47 -11.87 -0.09 5.50 16 4 O -0.55 -8.16 16.21 5.56 0.09 -8.07 16 5 C -0.14 -0.87 6.03 -28.10 -0.17 -1.04 16 6 C -0.12 -0.50 6.03 -26.52 -0.16 -0.66 16 7 C -0.13 -0.66 5.29 -26.59 -0.14 -0.80 16 8 C 0.13 0.93 3.14 -69.53 -0.22 0.71 16 9 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.50 4.85 6.22 -10.98 -0.07 4.79 16 11 O -0.52 -7.15 14.10 5.56 0.08 -7.07 16 12 N -0.71 -6.00 5.45 -60.29 -0.33 -6.33 16 13 C 0.09 0.92 5.34 -4.04 -0.02 0.90 16 14 C 0.09 1.05 3.09 -26.73 -0.08 0.97 16 15 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 16 O -0.56 -6.94 13.03 -35.23 -0.46 -7.40 16 17 C 0.13 2.24 5.90 -4.04 -0.02 2.22 16 18 N -0.75 -16.98 5.35 -59.91 -0.32 -17.30 16 19 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 23 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.27 -6.33 6.52 56.52 0.37 -5.96 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.98 7.21 -51.93 -0.37 0.61 16 29 H 0.09 1.07 5.00 -51.93 -0.26 0.81 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.41 2.65 8.35 -40.82 -0.34 2.31 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.38 3.77 9.04 45.56 0.41 4.18 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.37 8.21 5.53 -40.82 -0.23 7.99 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -36.61 350.89 -6.64 -43.25 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.87 Total: 8.34 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.65 Total: 6.85 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.40 Total: -58.17 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.29 Total: -22.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.61 -6.64 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667929582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.784 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds