Wall clock time and date at job start Tue Mar 31 2020 03:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33355 * 117.94362 * 2 1 4 4 O 1.21281 * 118.24800 * 2.19660 * 3 2 1 5 5 C 1.50183 * 123.50397 * 182.24498 * 3 2 1 6 6 C 1.53063 * 109.88769 * 342.37540 * 5 3 2 7 7 C 1.53347 * 108.42518 * 48.91630 * 6 5 3 8 8 C 1.45749 * 117.94834 * 179.97438 * 2 1 3 9 9 H 1.08991 * 109.30469 * 281.24481 * 8 2 1 10 10 C 1.50706 * 109.29647 * 40.61899 * 8 2 1 11 11 O 1.21275 * 120.00376 * 21.03358 * 10 8 2 12 12 N 1.34771 * 119.99657 * 201.02974 * 10 8 2 13 13 C 1.46501 * 120.00059 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47246 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46586 * 60.00789 * 14 13 12 16 16 O 1.42894 * 109.47556 * 300.00284 * 14 13 12 17 17 C 1.53004 * 109.47079 * 180.02562 * 14 13 12 18 18 N 1.46494 * 109.47371 * 185.00282 * 17 14 13 19 19 C 1.36931 * 120.00304 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00058 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99639 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99883 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46750 * 90.00427 * 23 21 19 25 25 H 1.48499 * 109.46999 * 210.00283 * 23 21 19 26 26 H 1.48495 * 109.47229 * 330.00389 * 23 21 19 27 27 H 1.08992 * 109.47120 * 270.02622 * 1 2 3 28 28 H 1.09003 * 109.47026 * 30.02654 * 1 2 3 29 29 H 1.08999 * 109.46436 * 150.02258 * 1 2 3 30 30 H 1.09002 * 109.38684 * 222.25705 * 5 3 2 31 31 H 1.09001 * 109.41595 * 102.51726 * 5 3 2 32 32 H 1.09007 * 109.67406 * 289.18553 * 6 5 3 33 33 H 1.09000 * 109.67703 * 168.65377 * 6 5 3 34 34 H 1.08997 * 109.59875 * 52.22698 * 7 6 5 35 35 H 1.09001 * 109.60114 * 172.71165 * 7 6 5 36 36 H 0.96997 * 120.00468 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.47363 * 300.00922 * 13 12 10 38 38 H 1.09002 * 109.46699 * 60.00520 * 13 12 10 39 39 H 0.96703 * 113.99821 * 300.00439 * 16 14 13 40 40 H 1.09004 * 109.47182 * 305.00729 * 17 14 13 41 41 H 1.09001 * 109.46736 * 65.00216 * 17 14 13 42 42 H 0.97001 * 119.99703 * 359.97438 * 18 17 14 43 43 H 0.96999 * 119.99493 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0900 1.1781 0.0000 4 8 1.4158 2.1854 0.0409 5 6 3.5839 1.3240 -0.0491 6 6 4.2493 0.0016 0.3397 7 6 3.5949 -1.1260 -0.4676 8 6 2.1481 -1.2875 0.0006 9 1 2.1398 -1.6994 1.0096 10 6 1.4278 -2.2339 -0.9250 11 8 0.7039 -1.7979 -1.7949 12 7 1.5882 -3.5648 -0.7861 13 6 0.8875 -4.4848 -1.6855 14 6 1.2396 -5.9270 -1.3152 15 1 0.9359 -6.1225 -0.2869 16 8 2.6499 -6.1203 -1.4403 17 6 0.5084 -6.8879 -2.2549 18 7 0.7499 -8.2679 -1.8270 19 6 0.1930 -9.3078 -2.5222 20 1 -0.4247 -9.1107 -3.3859 21 6 0.4215 -10.6156 -2.1163 22 7 -0.1135 -11.6151 -2.7850 23 14 1.4893 -10.9566 -0.6221 24 1 0.6403 -10.9897 0.5958 25 1 2.1685 -12.2667 -0.7878 26 1 2.5078 -9.8846 -0.4865 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3632 -0.8902 -0.5135 30 1 3.8943 2.1038 0.6465 31 1 3.8881 1.5994 -1.0589 32 1 4.1087 -0.1807 1.4052 33 1 5.3143 0.0457 0.1119 34 1 3.6102 -0.8731 -1.5277 35 1 4.1385 -2.0564 -0.3033 36 1 2.1669 -3.9136 -0.0902 37 1 -0.1882 -4.3377 -1.5898 38 1 1.1909 -4.2890 -2.7139 39 1 2.9909 -5.9630 -2.3315 40 1 -0.5614 -6.6805 -2.2262 41 1 0.8774 -6.7529 -3.2717 42 1 1.3050 -8.4451 -1.0515 43 1 0.0465 -12.5289 -2.5016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667929582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:06 Heat of formation + Delta-G solvation = -133.762662 kcal Electronic energy + Delta-G solvation = -24525.266023 eV Core-core repulsion = 20797.690326 eV Total energy + Delta-G solvation = -3727.575697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10524 -40.51096 -39.04312 -37.33823 -36.23586 -35.51962 -34.85243 -33.48878 -31.74408 -30.42523 -28.19373 -27.39623 -25.82723 -23.96834 -23.25714 -22.84714 -21.74314 -19.83629 -19.71689 -18.79122 -17.93365 -17.59196 -17.41134 -17.12338 -16.68223 -16.51825 -15.97983 -15.91569 -15.44760 -15.25703 -15.19864 -14.88342 -14.47989 -14.43598 -14.29453 -14.05953 -13.54582 -13.42682 -13.30080 -13.10378 -12.80552 -12.73482 -12.60071 -12.22347 -11.99272 -11.87273 -11.84592 -11.81587 -11.32765 -11.06395 -10.97632 -10.69440 -10.20507 -9.79296 -9.31702 -8.03296 -5.37452 1.36148 1.41061 1.44001 1.46252 1.52366 1.80955 2.16043 2.49629 3.26399 3.34495 3.46569 3.51343 3.57911 3.65771 3.84835 3.98136 4.02797 4.10024 4.19083 4.25091 4.34123 4.52784 4.55665 4.61032 4.73341 4.77505 4.84342 4.86725 4.93755 4.95850 5.04041 5.18887 5.22798 5.29223 5.31726 5.73905 6.20012 6.28865 6.45972 6.78346 7.01852 7.08040 7.12770 7.83025 8.02340 9.18014 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.002606 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.978629 B =10739.813821 C =11171.876472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.589 5.589 3 C 0.508 3.492 4 O -0.603 6.603 5 C -0.132 4.132 6 C -0.112 4.112 7 C -0.125 4.125 8 C 0.127 3.873 9 H 0.131 0.869 10 C 0.502 3.498 11 O -0.570 6.570 12 N -0.699 5.699 13 C 0.100 3.900 14 C 0.108 3.892 15 H 0.112 0.888 16 O -0.560 6.560 17 C 0.122 3.878 18 N -0.752 5.752 19 C -0.239 4.239 20 H 0.055 0.945 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.960 3.040 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.247 1.247 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.420 0.580 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.388 0.612 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.370 0.630 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.893 24.318 10.427 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C 0.299 3.701 4 O -0.485 6.485 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.163 4.163 8 C 0.020 3.980 9 H 0.149 0.851 10 C 0.288 3.712 11 O -0.449 6.449 12 N -0.352 5.352 13 C -0.025 4.025 14 C 0.048 3.952 15 H 0.130 0.870 16 O -0.367 6.367 17 C -0.005 4.005 18 N -0.398 5.398 19 C -0.370 4.370 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.786 3.214 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.171 1.171 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.258 0.742 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.204 0.796 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.880 24.900 10.287 29.444 hybrid contribution -0.067 -0.785 -0.131 0.799 sum 11.813 24.115 10.156 28.710 Atomic orbital electron populations 1.21922 0.79976 1.03867 1.01833 1.47058 1.07565 1.05579 1.71796 1.21049 0.92760 0.81747 0.74563 1.90696 1.68036 1.37095 1.52718 1.21760 0.87622 1.01883 1.05886 1.21677 1.01495 0.90672 1.01092 1.21965 0.90381 1.03030 1.00948 1.21236 0.93889 0.82240 1.00590 0.85147 1.21143 0.81597 0.83463 0.84969 1.90716 1.40137 1.77687 1.36374 1.45705 1.48680 1.04708 1.36087 1.21849 0.97897 0.88236 0.94511 1.22122 0.81590 0.90893 1.00644 0.86986 1.86527 1.20777 1.92715 1.36726 1.21420 0.98466 0.83704 0.96892 1.42535 1.60780 1.01785 1.34734 1.19029 1.23413 0.86346 1.08163 0.92732 1.25577 1.02366 0.95170 1.02628 1.69897 1.50839 0.98877 1.43882 0.85339 0.79304 0.77414 0.79315 1.20366 1.22484 1.17130 0.91895 0.92681 0.89601 0.86999 0.87446 0.89372 0.87176 0.91452 0.85843 0.74178 0.90681 0.90879 0.76253 0.94606 0.94893 0.79640 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 9.59 127.77 1.23 2.70 16 2 N -0.59 -11.15 2.96 -831.53 -2.46 -13.61 16 3 C 0.51 10.65 7.47 87.72 0.66 11.30 16 4 O -0.60 -18.40 16.21 -3.03 -0.05 -18.45 16 5 C -0.13 -1.41 6.03 29.71 0.18 -1.23 16 6 C -0.11 -0.46 6.03 30.73 0.19 -0.28 16 7 C -0.13 -0.81 5.29 30.68 0.16 -0.65 16 8 C 0.13 1.49 3.14 44.36 0.14 1.63 16 9 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 10 C 0.50 8.68 6.22 87.66 0.54 9.23 16 11 O -0.57 -15.22 14.10 -3.01 -0.04 -15.26 16 12 N -0.70 -9.60 5.45 -463.06 -2.52 -12.12 16 13 C 0.10 1.84 5.34 86.38 0.46 2.30 16 14 C 0.11 2.35 3.09 30.60 0.09 2.45 16 15 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 16 O -0.56 -11.87 13.03 -148.98 -1.94 -13.81 16 17 C 0.12 3.99 5.90 86.38 0.51 4.50 16 18 N -0.75 -32.91 5.35 -343.45 -1.84 -34.75 16 19 C -0.24 -13.29 10.47 84.04 0.88 -12.41 16 20 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 22 N -0.98 -62.52 13.97 21.65 0.30 -62.22 16 23 Si 0.96 44.26 27.74 68.60 1.90 46.16 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.25 -10.21 6.52 99.48 0.65 -9.56 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.46 7.21 -2.39 -0.02 1.44 16 29 H 0.09 2.01 5.00 -2.39 -0.01 2.00 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 0.21 8.13 -2.38 -0.02 0.19 16 33 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.07 0.67 8.10 -2.39 -0.02 0.66 16 35 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.42 3.64 8.35 -92.71 -0.77 2.87 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.39 6.41 9.04 -74.06 -0.67 5.74 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.37 15.52 5.53 -92.71 -0.51 15.00 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -82.74 350.89 -2.12 -84.86 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.97 Total: 23.02 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 5.50 Total: 16.18 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.52 Total: -122.70 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.03 Total: -47.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -82.74 -2.12 -84.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667929582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.903 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds