Wall clock time and date at job start Tue Mar 31 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00068 * 2 1 4 4 C 1.50696 * 109.47203 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99829 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00421 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00342 * 180.02562 * 6 4 3 8 8 H 1.08994 * 112.84846 * 23.80764 * 7 6 4 9 9 C 1.53788 * 113.61422 * 155.00144 * 7 6 4 10 10 C 1.53780 * 87.08121 * 89.19953 * 9 7 6 11 11 H 1.08999 * 113.61759 * 270.80376 * 10 9 7 12 12 C 1.52998 * 113.61640 * 139.97928 * 10 9 7 13 13 N 1.46896 * 109.47624 * 176.52998 * 12 10 9 14 14 C 1.46899 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46987 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47403 * 120.00325 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00122 * 22 20 18 26 26 C 1.53789 * 87.17318 * 25.38976 * 10 9 7 27 27 H 1.09004 * 109.46967 * 300.00075 * 1 2 3 28 28 H 1.09003 * 109.46901 * 59.99865 * 1 2 3 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46743 * 60.00065 * 3 2 1 31 31 H 1.08999 * 109.46901 * 300.00040 * 3 2 1 32 32 H 0.97001 * 119.99668 * 0.02562 * 6 4 3 33 33 H 1.08999 * 113.61118 * 334.65064 * 9 7 6 34 34 H 1.08998 * 113.61468 * 203.74945 * 9 7 6 35 35 H 1.09004 * 109.46677 * 56.53162 * 12 10 9 36 36 H 1.09004 * 109.46850 * 296.53461 * 12 10 9 37 37 H 1.00900 * 110.99693 * 56.04421 * 13 12 10 38 38 H 1.09003 * 109.46477 * 60.00383 * 14 13 12 39 39 H 1.08993 * 109.47002 * 300.00709 * 14 13 12 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 41 41 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 42 42 H 1.09001 * 113.61334 * 89.15888 * 26 10 9 43 43 H 1.08991 * 113.61260 * 220.06099 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7369 2.1811 0.0003 8 1 6.0862 1.2314 -0.4048 9 6 6.4519 3.4053 -0.5957 10 6 6.4477 3.9997 0.8226 11 1 5.5562 4.5848 1.0483 12 6 7.7436 4.7274 1.1860 13 7 7.6107 5.3276 2.5201 14 6 8.8392 6.0360 2.9036 15 6 8.6651 6.6375 4.2743 16 8 7.6206 6.4902 4.8731 17 7 9.6705 7.3383 4.8352 18 6 9.5102 7.8903 6.0799 19 1 8.5799 7.7598 6.6127 20 6 10.5447 8.6177 6.6558 21 7 11.6764 8.7768 6.0071 22 14 10.3265 9.3692 8.3519 23 1 8.9710 9.0468 8.8656 24 1 11.3497 8.8148 9.2743 25 1 10.4856 10.8431 8.2645 26 6 6.3851 2.5549 1.3457 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8593 3.1725 -0.0001 33 1 5.8420 3.9645 -1.3052 34 1 7.4502 3.1864 -0.9744 35 1 7.9382 5.5105 0.4531 36 1 8.5707 4.0175 1.1876 37 1 7.3660 4.6306 3.2074 38 1 9.0418 6.8280 2.1826 39 1 9.6736 5.3349 2.9172 40 1 10.5060 7.4558 4.3565 41 1 12.3987 9.2843 6.4093 42 1 7.3652 2.1031 1.4988 43 1 5.7215 2.4287 2.2011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675706743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:36 Heat of formation + Delta-G solvation = -95.813634 kcal Electronic energy + Delta-G solvation = -23192.816104 eV Core-core repulsion = 19466.886000 eV Total energy + Delta-G solvation = -3725.930104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57113 -39.04599 -38.20135 -37.56847 -35.22565 -33.89337 -33.32674 -31.21932 -29.57302 -28.29719 -26.37799 -25.98197 -25.42984 -23.72981 -22.08923 -21.29534 -19.55806 -19.11199 -17.90180 -17.76177 -16.98049 -16.68790 -16.38463 -15.84788 -15.54498 -15.32251 -14.92101 -14.65007 -14.47800 -14.08966 -14.00671 -13.64187 -13.43261 -13.07421 -13.04822 -12.70402 -12.58932 -12.27848 -11.90468 -11.73510 -11.56043 -11.50163 -11.08291 -10.97810 -10.64952 -10.34536 -10.29802 -10.25353 -10.21635 -10.09285 -9.52002 -9.32441 -8.45693 -8.04852 -7.95524 -6.41816 -3.82579 2.27650 2.43587 3.16264 3.26771 3.34110 3.64709 3.91197 4.05855 4.24712 4.25392 4.36513 4.52816 4.63059 4.63283 4.73787 4.82612 4.88312 4.93318 5.13874 5.24083 5.25304 5.32110 5.44897 5.48709 5.53309 5.58950 5.70800 5.79487 5.87222 5.98109 5.99663 6.04671 6.26927 6.36349 6.53392 7.15598 7.24479 7.55387 7.68748 7.90351 8.06822 8.61451 9.18050 9.54630 10.06083 10.76028 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.002005 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.520802 B =13964.701403 C =14696.075652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.710 5.710 7 C 0.121 3.879 8 H 0.102 0.898 9 C -0.139 4.139 10 C -0.105 4.105 11 H 0.099 0.901 12 C 0.068 3.932 13 N -0.669 5.669 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.151 4.151 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.349 0.651 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 -11.669 -16.522 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.038 4.038 4 C 0.301 3.699 5 O -0.393 6.393 6 N -0.363 5.363 7 C 0.016 3.984 8 H 0.120 0.880 9 C -0.177 4.177 10 C -0.124 4.124 11 H 0.118 0.882 12 C -0.062 4.062 13 N -0.301 5.301 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.189 4.189 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.083 -12.091 -16.281 25.274 hybrid contribution 0.754 0.581 0.764 1.220 sum -14.329 -11.510 -15.517 24.054 Atomic orbital electron populations 1.22856 0.80200 1.03426 1.00228 1.88018 1.19926 1.25119 1.95445 1.22244 0.91523 0.87154 1.02844 1.20265 0.88683 0.84602 0.76379 1.90743 1.74573 1.26485 1.47485 1.45546 1.06303 1.08724 1.75773 1.21867 0.79017 0.99931 0.97630 0.87999 1.23341 1.01326 0.96111 0.96939 1.22627 0.99508 0.95110 0.95171 0.88249 1.21951 0.95253 0.96971 0.91990 1.60090 1.33789 1.32927 1.03289 1.21673 0.91145 0.98379 0.97080 1.19834 0.85373 0.84443 0.87715 1.90519 1.28041 1.63749 1.64475 1.41879 1.14440 1.46531 1.17272 1.19761 1.01531 1.28604 0.92946 0.87873 1.25267 0.94977 0.97702 1.00066 1.69622 1.04475 1.41528 1.38706 0.85796 0.78543 0.78494 0.81480 1.19225 1.20781 1.20746 1.23560 1.01572 0.96292 0.97500 0.93645 0.93759 0.89016 0.89950 0.90132 0.76267 0.90762 0.88606 0.91045 0.95378 0.83214 0.89657 0.93957 0.77463 0.91938 0.89182 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.68 10.24 -55.14 -0.56 -4.24 16 3 C 0.04 0.31 6.42 36.00 0.23 0.54 16 4 C 0.52 5.34 7.91 -10.99 -0.09 5.25 16 5 O -0.52 -7.89 16.10 -14.36 -0.23 -8.12 16 6 N -0.71 -5.61 5.26 -52.93 -0.28 -5.89 16 7 C 0.12 1.06 4.33 -67.02 -0.29 0.77 16 8 H 0.10 1.04 7.46 -51.93 -0.39 0.66 16 9 C -0.14 -1.01 7.39 -25.92 -0.19 -1.20 16 10 C -0.11 -0.98 3.77 -89.80 -0.34 -1.32 16 11 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 12 C 0.07 0.78 5.51 -3.83 -0.02 0.76 16 13 N -0.67 -10.60 6.13 -115.06 -0.70 -11.31 16 14 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 15 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 16 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 17 N -0.56 -14.39 5.29 -10.96 -0.06 -14.44 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.15 -1.45 7.44 -25.82 -0.19 -1.65 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.40 2.10 8.70 -40.82 -0.36 1.74 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.31 7.88 -51.93 -0.41 -0.10 16 37 H 0.35 5.81 8.43 -39.29 -0.33 5.47 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -35.51 367.08 -7.45 -42.96 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.80 Total: 11.56 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.13 Total: 7.62 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.32 Total: -55.51 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.71 Total: -28.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.51 -7.45 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675706743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds