Wall clock time and date at job start Tue Mar 31 2020 03:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00068 * 2 1 4 4 C 1.50696 * 109.47203 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99829 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00421 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00342 * 180.02562 * 6 4 3 8 8 H 1.08994 * 112.84846 * 23.80764 * 7 6 4 9 9 C 1.53788 * 113.61422 * 155.00144 * 7 6 4 10 10 C 1.53780 * 87.08121 * 89.19953 * 9 7 6 11 11 H 1.08999 * 113.61759 * 270.80376 * 10 9 7 12 12 C 1.52998 * 113.61640 * 139.97928 * 10 9 7 13 13 N 1.46896 * 109.47624 * 176.52998 * 12 10 9 14 14 C 1.46899 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46987 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47403 * 120.00325 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00122 * 22 20 18 26 26 C 1.53789 * 87.17318 * 25.38976 * 10 9 7 27 27 H 1.09004 * 109.46967 * 300.00075 * 1 2 3 28 28 H 1.09003 * 109.46901 * 59.99865 * 1 2 3 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46743 * 60.00065 * 3 2 1 31 31 H 1.08999 * 109.46901 * 300.00040 * 3 2 1 32 32 H 0.97001 * 119.99668 * 0.02562 * 6 4 3 33 33 H 1.08999 * 113.61118 * 334.65064 * 9 7 6 34 34 H 1.08998 * 113.61468 * 203.74945 * 9 7 6 35 35 H 1.09004 * 109.46677 * 56.53162 * 12 10 9 36 36 H 1.09004 * 109.46850 * 296.53461 * 12 10 9 37 37 H 1.00900 * 110.99693 * 56.04421 * 13 12 10 38 38 H 1.09003 * 109.46477 * 60.00383 * 14 13 12 39 39 H 1.08993 * 109.47002 * 300.00709 * 14 13 12 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 41 41 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 42 42 H 1.09001 * 113.61334 * 89.15888 * 26 10 9 43 43 H 1.08991 * 113.61260 * 220.06099 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7369 2.1811 0.0003 8 1 6.0862 1.2314 -0.4048 9 6 6.4519 3.4053 -0.5957 10 6 6.4477 3.9997 0.8226 11 1 5.5562 4.5848 1.0483 12 6 7.7436 4.7274 1.1860 13 7 7.6107 5.3276 2.5201 14 6 8.8392 6.0360 2.9036 15 6 8.6651 6.6375 4.2743 16 8 7.6206 6.4902 4.8731 17 7 9.6705 7.3383 4.8352 18 6 9.5102 7.8903 6.0799 19 1 8.5799 7.7598 6.6127 20 6 10.5447 8.6177 6.6558 21 7 11.6764 8.7768 6.0071 22 14 10.3265 9.3692 8.3519 23 1 8.9710 9.0468 8.8656 24 1 11.3497 8.8148 9.2743 25 1 10.4856 10.8431 8.2645 26 6 6.3851 2.5549 1.3457 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8593 3.1725 -0.0001 33 1 5.8420 3.9645 -1.3052 34 1 7.4502 3.1864 -0.9744 35 1 7.9382 5.5105 0.4531 36 1 8.5707 4.0175 1.1876 37 1 7.3660 4.6306 3.2074 38 1 9.0418 6.8280 2.1826 39 1 9.6736 5.3349 2.9172 40 1 10.5060 7.4558 4.3565 41 1 12.3987 9.2843 6.4093 42 1 7.3652 2.1031 1.4988 43 1 5.7215 2.4287 2.2011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675706743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:35 Heat of formation + Delta-G solvation = -124.524556 kcal Electronic energy + Delta-G solvation = -23194.061103 eV Core-core repulsion = 19466.886000 eV Total energy + Delta-G solvation = -3727.175103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33470 -40.18739 -39.66673 -38.26884 -36.52496 -35.77267 -34.25933 -33.25846 -30.35310 -29.32518 -27.34724 -26.70361 -26.60125 -25.19047 -22.99607 -22.03383 -21.13110 -20.17576 -19.86785 -18.50984 -17.84952 -17.60244 -17.26410 -17.07257 -16.59938 -16.48040 -16.15645 -15.82825 -15.64482 -15.39957 -15.24391 -14.93509 -14.39190 -14.22331 -13.99711 -13.72415 -13.51014 -13.36091 -13.15573 -13.08174 -12.83652 -12.56634 -12.41205 -12.36380 -12.11831 -11.81314 -11.51868 -11.43186 -11.07282 -10.92152 -10.77308 -10.34350 -10.07344 -10.01854 -9.29685 -8.47216 -5.96004 1.36497 1.41839 1.51201 1.56071 1.82172 2.04958 2.29111 2.93898 3.12167 3.20128 3.50205 3.56699 3.72912 3.76799 3.91690 3.99455 4.19450 4.27706 4.33627 4.46291 4.50339 4.51262 4.56550 4.57429 4.70325 4.79870 4.82904 4.87117 4.88317 4.92160 5.08602 5.19997 5.29592 5.40808 5.64176 5.91127 6.03790 6.13845 6.43255 6.52922 6.59866 7.12308 7.20105 7.56019 8.11335 8.70373 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.002005 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.520802 B =13964.701403 C =14696.075652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.509 3.491 5 O -0.577 6.577 6 N -0.696 5.696 7 C 0.118 3.882 8 H 0.085 0.915 9 C -0.118 4.118 10 C -0.100 4.100 11 H 0.096 0.904 12 C 0.069 3.931 13 N -0.683 5.683 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.154 4.154 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.418 0.582 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.341 0.659 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.089 0.911 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.987 -10.696 -17.649 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.456 6.456 6 N -0.349 5.349 7 C 0.012 3.988 8 H 0.103 0.897 9 C -0.156 4.156 10 C -0.119 4.119 11 H 0.115 0.885 12 C -0.060 4.060 13 N -0.315 5.315 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.193 4.193 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.256 0.744 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.344 -11.075 -17.445 25.738 hybrid contribution 0.812 0.261 1.093 1.386 sum -14.533 -10.814 -16.352 24.403 Atomic orbital electron populations 1.23033 0.78264 1.04142 1.01681 1.87961 1.22174 1.26878 1.95812 1.22402 0.88992 0.86766 1.05420 1.20959 0.90247 0.84077 0.75101 1.90713 1.75803 1.28652 1.50451 1.45467 1.05984 1.09078 1.74418 1.21836 0.79615 1.00075 0.97283 0.89656 1.23257 1.01997 0.94463 0.95884 1.22556 0.98416 0.94259 0.96628 0.88529 1.22075 0.96683 0.97529 0.89706 1.60122 1.33010 1.33417 1.04903 1.21545 0.92749 0.99283 0.93267 1.20944 0.84096 0.83034 0.89511 1.90486 1.29548 1.64867 1.66195 1.41950 1.15137 1.47115 1.16887 1.19711 1.01354 1.30796 0.94533 0.90368 1.26047 0.94392 0.97413 1.03460 1.69677 1.04855 1.41543 1.40015 0.84862 0.78248 0.78071 0.77091 1.19835 1.19623 1.19532 1.23575 1.01371 0.96981 0.97329 0.92436 0.91958 0.88848 0.87661 0.86856 0.74414 0.88902 0.87453 0.89924 0.94332 0.84097 0.87666 0.91821 0.76947 0.91292 0.89207 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.98 10.24 -129.94 -1.33 -9.31 16 3 C 0.04 0.57 6.42 71.23 0.46 1.02 16 4 C 0.51 10.36 7.91 87.66 0.69 11.05 16 5 O -0.58 -18.20 16.10 15.98 0.26 -17.95 16 6 N -0.70 -10.16 5.26 -439.76 -2.31 -12.48 16 7 C 0.12 1.96 4.33 45.58 0.20 2.15 16 8 H 0.09 1.76 7.46 -2.39 -0.02 1.74 16 9 C -0.12 -1.40 7.39 31.12 0.23 -1.17 16 10 C -0.10 -1.67 3.77 -10.27 -0.04 -1.70 16 11 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 12 C 0.07 1.41 5.51 86.30 0.48 1.89 16 13 N -0.68 -20.73 6.13 -517.94 -3.17 -23.91 16 14 C 0.06 2.16 6.17 85.56 0.53 2.69 16 15 C 0.44 20.83 7.82 87.66 0.69 21.51 16 16 O -0.62 -34.83 15.78 -3.07 -0.05 -34.88 16 17 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 18 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 22 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 C -0.15 -2.88 7.44 31.18 0.23 -2.65 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.42 3.43 8.70 -92.71 -0.81 2.63 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.04 0.74 7.88 -2.38 -0.02 0.72 16 37 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 38 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.09 1.67 7.92 -2.39 -0.02 1.65 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -79.09 367.08 -1.19 -80.27 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -1.25 Total: 35.97 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.99 Total: 17.75 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -6.83 Total: -116.86 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -1.12 Total: -62.14 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -79.09 -1.19 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675706743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.250 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds