Wall clock time and date at job start Tue Mar 31 2020 03:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99706 * 2 1 4 4 C 1.53001 * 109.47114 * 90.00236 * 3 2 1 5 5 H 1.09006 * 109.47121 * 59.99738 * 4 3 2 6 6 O 1.42895 * 109.46955 * 299.99823 * 4 3 2 7 7 C 1.52992 * 109.47148 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47267 * 184.99978 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99892 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99858 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47174 * 89.99644 * 13 11 9 15 15 H 1.48494 * 109.46800 * 209.99692 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99394 * 13 11 9 17 17 C 1.34774 * 120.00004 * 179.97438 * 2 1 3 18 18 O 1.21282 * 119.99857 * 179.97438 * 17 2 1 19 19 C 1.50697 * 120.00284 * 0.02562 * 17 2 1 20 20 N 1.46492 * 109.47155 * 179.97438 * 19 17 2 21 21 C 1.34778 * 120.00044 * 179.97438 * 20 19 17 22 22 O 1.21281 * 119.99899 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.00258 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.49929 * 248.62478 * 23 21 20 25 25 C 1.53002 * 117.49926 * 180.02562 * 23 21 20 26 26 H 1.08994 * 109.47389 * 90.00310 * 1 2 3 27 27 H 1.09007 * 109.46958 * 210.00004 * 1 2 3 28 28 H 1.09000 * 109.47278 * 329.99740 * 1 2 3 29 29 H 1.08996 * 109.46975 * 329.99704 * 3 2 1 30 30 H 1.08999 * 109.46944 * 210.00253 * 3 2 1 31 31 H 0.96699 * 114.00430 * 299.99811 * 6 4 3 32 32 H 1.09004 * 109.47330 * 64.99881 * 7 4 3 33 33 H 1.09005 * 109.47124 * 305.00085 * 7 4 3 34 34 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 35 35 H 0.97005 * 119.99715 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47148 * 299.99649 * 19 17 2 37 37 H 1.08997 * 109.46930 * 59.99789 * 19 17 2 38 38 H 0.97001 * 120.00380 * 359.97438 * 20 19 17 39 39 H 1.08997 * 115.55054 * 34.32830 * 23 21 20 40 40 H 1.08996 * 117.49656 * 359.97438 * 24 23 21 41 41 H 1.09002 * 117.49785 * 145.01936 * 24 23 21 42 42 H 1.09000 * 117.49809 * 214.97726 * 25 23 21 43 43 H 1.08999 * 117.50012 * 359.97361 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8813 2.1161 7 6 3.2179 3.0351 1.4425 8 7 3.5663 3.3978 2.8185 9 6 4.2592 4.5524 3.0677 10 1 4.5527 5.1934 2.2495 11 6 4.5889 4.8963 4.3715 12 7 5.2554 6.0057 4.6109 13 14 4.0880 3.7838 5.7860 14 1 5.1628 2.7910 6.0396 15 1 3.8718 4.6018 7.0064 16 1 2.8311 3.0743 5.4365 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 7 2.3374 -3.5857 0.0005 21 6 1.8882 -4.8564 0.0010 22 8 0.6958 -5.0781 0.0010 23 6 2.8675 -6.0018 0.0016 24 6 2.9507 -6.8608 -1.2618 25 6 2.2951 -7.4207 0.0016 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6083 2.0284 -0.5139 30 1 3.1498 1.1385 -0.5139 31 1 0.6267 2.5440 1.7127 32 1 2.5933 3.8158 1.0081 33 1 4.1287 2.9285 0.8531 34 1 3.3062 2.8202 3.5530 35 1 5.4861 6.2459 5.5220 36 1 0.7585 -2.5299 0.8903 37 1 0.7591 -2.5302 -0.8897 38 1 3.2911 -3.4085 0.0001 39 1 3.7902 -5.8312 0.5562 40 1 2.2969 -6.5977 -2.0932 41 1 3.9284 -7.2553 -1.5387 42 1 2.8412 -8.1838 0.5562 43 1 1.2101 -7.5257 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677060284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:43 Heat of formation + Delta-G solvation = -75.140471 kcal Electronic energy + Delta-G solvation = -24061.099682 eV Core-core repulsion = 20336.066034 eV Total energy + Delta-G solvation = -3725.033648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70335 -39.84219 -37.79038 -36.56515 -35.49325 -34.74017 -34.21154 -31.60161 -30.38608 -28.58506 -27.06516 -25.58152 -23.98709 -22.83018 -22.35861 -21.36097 -20.60394 -19.61955 -18.13303 -17.74322 -17.07626 -16.77092 -16.58726 -16.09397 -15.62117 -15.42590 -15.09430 -14.88668 -14.52230 -14.22837 -13.91164 -13.49832 -13.31980 -13.18232 -12.92718 -12.80955 -12.71269 -12.43226 -12.25555 -11.96584 -11.71374 -11.27735 -11.05052 -10.94543 -10.93710 -10.84795 -10.34546 -10.26902 -10.16537 -9.90406 -9.59491 -9.52249 -8.92567 -8.74798 -7.25041 -5.77630 -3.13356 2.12015 2.26421 2.39351 2.98199 3.40761 3.45531 3.47070 3.47480 4.07076 4.29848 4.39358 4.47613 4.49985 4.60860 4.72122 4.79193 4.82851 4.91945 4.98522 5.03563 5.18487 5.19615 5.36579 5.44260 5.46835 5.51485 5.52572 5.62576 5.71121 5.77149 5.83475 5.94087 6.18453 6.41724 6.57010 7.00656 7.14438 7.76363 7.81393 7.86284 7.98056 8.41140 9.20652 9.93086 10.12954 11.40441 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.002703 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.056232 B =10355.273934 C =10948.614272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.086 3.914 4 C 0.081 3.919 5 H 0.101 0.899 6 O -0.554 6.554 7 C 0.132 3.868 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.884 3.116 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.507 3.493 18 O -0.535 6.535 19 C 0.102 3.898 20 N -0.714 5.714 21 C 0.546 3.454 22 O -0.544 6.544 23 C -0.195 4.195 24 C -0.152 4.152 25 C -0.147 4.147 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.369 0.631 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.365 0.635 35 H 0.260 0.740 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -22.864 -14.258 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C -0.037 4.037 4 C 0.021 3.979 5 H 0.119 0.881 6 O -0.359 6.359 7 C 0.003 3.997 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.581 5.581 13 Si 0.714 3.286 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.199 1.199 17 C 0.294 3.706 18 O -0.412 6.412 19 C -0.025 4.025 20 N -0.369 5.369 21 C 0.333 3.667 22 O -0.421 6.421 23 C -0.216 4.216 24 C -0.189 4.189 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.216 0.784 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.199 0.801 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.252 0.748 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.080 -23.226 -13.911 28.889 hybrid contribution -0.041 0.096 0.800 0.807 sum -10.120 -23.131 -13.112 28.449 Atomic orbital electron populations 1.21930 0.78754 1.04369 1.01732 1.47619 1.07404 1.05635 1.72647 1.22254 0.98719 0.84313 0.98409 1.22615 0.85484 0.98401 0.91408 0.88147 1.86609 1.28972 1.62896 1.57373 1.21194 0.96966 0.92686 0.88848 1.42582 1.68490 1.26574 1.01893 1.19041 1.27044 0.97648 0.93951 0.89279 1.24667 1.00137 0.97229 0.97007 1.69706 1.44263 1.24322 1.19841 0.86543 0.78684 0.80479 0.82927 1.21086 1.21718 1.19903 1.20472 0.88097 0.85536 0.76497 1.90725 1.13605 1.86948 1.49895 1.21098 0.92316 0.84345 1.04717 1.45667 1.11319 1.04521 1.75414 1.19664 0.88760 0.82957 0.75309 1.90698 1.16675 1.84794 1.49943 1.22163 1.01644 0.91751 1.06087 1.22950 1.03222 1.01397 0.91359 1.22964 1.02093 0.93098 1.00260 0.92362 0.90881 0.89855 0.89641 0.88487 0.78444 0.95331 0.94620 0.80122 0.93029 0.88197 0.88408 0.74781 0.85528 0.88217 0.87605 0.87779 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 9.98 59.85 0.60 1.11 16 2 N -0.60 -6.11 2.80 -181.57 -0.51 -6.62 16 3 C 0.09 0.98 5.10 -4.04 -0.02 0.96 16 4 C 0.08 1.22 3.27 -26.73 -0.09 1.13 16 5 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 6 O -0.55 -8.04 12.01 -35.23 -0.42 -8.46 16 7 C 0.13 2.44 5.90 -4.05 -0.02 2.42 16 8 N -0.75 -18.19 5.35 -59.91 -0.32 -18.51 16 9 C -0.25 -7.11 10.47 -15.06 -0.16 -7.27 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 13 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 14 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 16 H -0.27 -6.78 6.52 56.52 0.37 -6.41 16 17 C 0.51 5.86 7.74 -10.99 -0.09 5.78 16 18 O -0.53 -7.91 15.25 5.56 0.08 -7.82 16 19 C 0.10 0.97 4.71 -5.20 -0.02 0.95 16 20 N -0.71 -7.07 5.53 -61.48 -0.34 -7.41 16 21 C 0.55 5.74 7.61 -10.99 -0.08 5.65 16 22 O -0.54 -7.33 16.26 5.56 0.09 -7.24 16 23 C -0.20 -1.49 6.19 -91.77 -0.57 -2.06 16 24 C -0.15 -0.94 10.23 -26.75 -0.27 -1.21 16 25 C -0.15 -1.00 10.04 -26.75 -0.27 -1.27 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 28 H 0.08 0.54 6.88 -51.93 -0.36 0.19 16 29 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 30 H 0.10 1.21 7.42 -51.93 -0.39 0.82 16 31 H 0.37 4.02 8.79 45.56 0.40 4.42 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.37 8.97 5.53 -40.82 -0.23 8.74 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.10 0.92 7.40 -51.93 -0.38 0.54 16 37 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.41 3.97 7.44 -40.82 -0.30 3.66 16 39 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -37.08 361.63 -6.80 -43.88 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.80 Total: 11.31 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.09 Total: 6.25 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.39 Total: -61.46 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.25 Total: -23.52 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.08 -6.80 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677060284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.259 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds