Wall clock time and date at job start Tue Mar 31 2020 03:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00418 * 2 1 4 4 H 1.08002 * 119.99761 * 323.59864 * 3 2 1 5 5 C 1.38816 * 119.99941 * 143.59534 * 3 2 1 6 6 N 1.31612 * 119.99619 * 160.07221 * 5 3 2 7 7 Si 1.86799 * 120.00012 * 340.07227 * 5 3 2 8 8 H 1.48498 * 109.47262 * 95.39142 * 7 5 3 9 9 H 1.48499 * 109.47062 * 215.39192 * 7 5 3 10 10 H 1.48498 * 109.47176 * 335.39357 * 7 5 3 11 11 C 1.46499 * 119.99214 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47178 * 90.00351 * 11 2 1 13 13 H 1.09004 * 109.47047 * 59.99863 * 12 11 2 14 14 O 1.42901 * 109.47190 * 299.99387 * 12 11 2 15 15 C 1.53006 * 109.47168 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46891 * 184.99832 * 15 12 11 17 17 C 1.46500 * 119.99878 * 270.00041 * 16 15 12 18 18 C 1.34774 * 119.99678 * 90.00390 * 16 15 12 19 19 O 1.21273 * 120.00327 * 4.34107 * 18 16 15 20 20 C 1.50702 * 119.99656 * 184.33831 * 18 16 15 21 21 H 1.09001 * 110.43386 * 331.23539 * 20 18 16 22 22 C 1.54627 * 110.48596 * 208.69155 * 20 18 16 23 23 C 1.54474 * 101.76503 * 265.98863 * 22 20 18 24 24 N 1.46762 * 105.47304 * 334.58304 * 23 22 20 25 25 C 1.34419 * 111.30284 * 17.28283 * 24 23 22 26 26 O 1.21278 * 124.93963 * 179.30408 * 25 24 23 27 27 H 1.08993 * 109.47181 * 266.07725 * 1 2 3 28 28 H 1.09010 * 109.46497 * 26.07381 * 1 2 3 29 29 H 1.08998 * 109.47597 * 146.07086 * 1 2 3 30 30 H 0.97005 * 119.99583 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47574 * 329.99513 * 11 2 1 32 32 H 1.09001 * 109.46982 * 209.99932 * 11 2 1 33 33 H 0.96700 * 114.00126 * 300.00768 * 14 12 11 34 34 H 1.09002 * 109.46884 * 64.99709 * 15 12 11 35 35 H 1.08999 * 109.46959 * 304.99855 * 15 12 11 36 36 H 1.09004 * 109.47055 * 264.72695 * 17 16 15 37 37 H 1.09002 * 109.47246 * 24.72707 * 17 16 15 38 38 H 1.08993 * 109.46978 * 144.73254 * 17 16 15 39 39 H 1.09004 * 110.96536 * 147.86761 * 22 20 18 40 40 H 1.08999 * 111.00008 * 24.12395 * 22 20 18 41 41 H 1.09003 * 110.24251 * 215.58827 * 23 22 20 42 42 H 1.08992 * 110.24554 * 93.58863 * 23 22 20 43 43 H 0.97003 * 124.34759 * 197.01716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7679 2.0299 -0.5551 5 6 3.3348 1.3030 0.7135 6 7 4.1868 2.2626 0.4210 7 14 3.7201 0.0989 2.0886 8 1 4.5695 -0.9992 1.5615 9 1 4.4429 0.8050 3.1768 10 1 2.4542 -0.4664 2.6207 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 1 3.0416 -0.9500 -1.9567 14 8 1.2038 -1.8804 -2.1170 15 6 3.2178 -3.0347 -1.4438 16 7 3.5662 -3.3967 -2.8200 17 6 2.6459 -4.2100 -3.6188 18 6 4.7333 -2.9817 -3.3511 19 8 5.5299 -2.3760 -2.6660 20 6 5.0484 -3.2703 -4.7963 21 1 4.5512 -4.1852 -5.1188 22 6 6.5764 -3.3823 -5.0050 23 6 6.9424 -1.9433 -5.4310 24 7 5.7183 -1.3853 -6.0176 25 6 4.6376 -2.1043 -5.6682 26 8 3.4994 -1.8558 -6.0052 27 1 -0.3633 -0.0703 1.0252 28 1 -0.3633 0.9232 -0.4517 29 1 -0.3634 -0.8526 -0.5736 30 1 5.0150 2.3443 0.9193 31 1 1.6083 -2.0286 0.5130 32 1 3.1498 -1.1388 0.5133 33 1 0.6265 -2.5431 -1.7138 34 1 2.5931 -3.8154 -1.0097 35 1 4.1285 -2.9284 -0.8544 36 1 2.9348 -5.2588 -3.5502 37 1 1.6309 -4.0872 -3.2408 38 1 2.6874 -3.8891 -4.6596 39 1 6.8108 -4.0948 -5.7960 40 1 7.0786 -3.6540 -4.0766 41 1 7.7416 -1.9610 -6.1720 42 1 7.2451 -1.3584 -4.5625 43 1 5.6919 -0.5965 -6.5816 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677165478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:22 Heat of formation + Delta-G solvation = -78.361625 kcal Electronic energy + Delta-G solvation = -26109.558761 eV Core-core repulsion = 22384.385433 eV Total energy + Delta-G solvation = -3725.173328 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07663 -39.09830 -37.53522 -36.38846 -35.34611 -34.52064 -31.88592 -31.48545 -30.17289 -28.10965 -27.04222 -26.07529 -25.33198 -22.70720 -21.82978 -21.08431 -20.84722 -19.02347 -17.79166 -17.43871 -17.02995 -16.12480 -15.89292 -15.73292 -15.23541 -15.10780 -14.77506 -14.40832 -13.90071 -13.80769 -13.62715 -13.34660 -13.24789 -12.96473 -12.81868 -12.62491 -12.41883 -12.35666 -11.85465 -11.74918 -11.61496 -11.35716 -11.28931 -10.81166 -10.57876 -10.40568 -10.14370 -10.07410 -9.81549 -9.61984 -9.49746 -9.18186 -8.54319 -8.36247 -6.72751 -5.92129 -3.33056 2.18571 2.69182 3.05534 3.30745 3.32233 3.47291 3.51792 4.15024 4.21516 4.38241 4.55467 4.72814 4.81726 4.88836 5.04321 5.17612 5.21744 5.32086 5.35782 5.38063 5.44109 5.58341 5.61647 5.79079 5.80492 5.89216 5.94591 5.95929 6.36773 6.43867 6.51742 6.62417 6.74240 6.80547 6.85458 6.86703 7.37444 8.08905 8.10383 8.16533 8.20469 8.44483 9.03531 9.76793 10.16762 11.23925 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.005181 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.872654 B = 5402.647548 C = 5939.717478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.603 5.603 3 C -0.267 4.267 4 H 0.079 0.921 5 C 0.031 3.969 6 N -0.901 5.901 7 Si 0.882 3.118 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.113 3.887 12 C 0.075 3.925 13 H 0.105 0.895 14 O -0.545 6.545 15 C 0.080 3.920 16 N -0.599 5.599 17 C 0.078 3.922 18 C 0.528 3.472 19 O -0.522 6.522 20 C -0.151 4.151 21 H 0.125 0.875 22 C -0.115 4.115 23 C 0.100 3.900 24 N -0.725 5.725 25 C 0.535 3.465 26 O -0.516 6.516 27 H 0.002 0.998 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.354 0.646 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -17.605 -11.128 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.326 5.326 3 C -0.395 4.395 4 H 0.096 0.904 5 C -0.169 4.169 6 N -0.543 5.543 7 Si 0.713 3.287 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.196 1.196 11 C -0.015 4.015 12 C 0.013 3.987 13 H 0.123 0.877 14 O -0.348 6.348 15 C -0.043 4.043 16 N -0.331 5.331 17 C -0.065 4.065 18 C 0.313 3.687 19 O -0.398 6.398 20 C -0.176 4.176 21 H 0.142 0.858 22 C -0.153 4.153 23 C -0.024 4.024 24 N -0.381 5.381 25 C 0.319 3.681 26 O -0.391 6.391 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.199 0.801 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.344 -16.665 -11.193 20.352 hybrid contribution 0.181 -0.715 0.908 1.170 sum 3.525 -17.380 -10.285 20.500 Atomic orbital electron populations 1.21048 0.84032 0.99487 0.96825 1.43838 1.00953 1.01412 1.86380 1.18841 1.05184 0.90206 1.25297 0.90370 1.25446 0.96993 0.96583 0.97858 1.69845 1.09274 1.34450 1.40729 0.86854 0.77793 0.80638 0.83449 1.21250 1.22939 1.19628 1.21758 0.97101 0.89006 0.93587 1.23145 0.84261 0.94645 0.96668 0.87732 1.86713 1.29082 1.62876 1.56144 1.22412 1.01657 0.98148 0.82062 1.47648 1.18562 1.52444 1.14454 1.21880 0.94345 0.93501 0.96801 1.19746 0.81701 0.79453 0.87758 1.90764 1.47572 1.39916 1.61542 1.22168 0.99984 1.00810 0.94625 0.85760 1.22551 0.92082 0.96895 1.03767 1.22133 0.86825 0.94338 0.99093 1.46092 1.08279 1.31268 1.52440 1.20113 0.84765 0.83627 0.79643 1.90806 1.19777 1.71858 1.56663 0.97970 0.93842 0.94906 0.92744 0.93965 0.92284 0.80146 0.90440 0.88989 0.93025 0.90140 0.90572 0.89288 0.88174 0.90004 0.89804 0.74658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.77 10.48 59.85 0.63 3.39 16 2 N -0.60 -15.09 2.44 -181.11 -0.44 -15.53 16 3 C -0.27 -7.90 9.94 -15.06 -0.15 -8.05 16 4 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 5 C 0.03 0.94 5.35 -17.43 -0.09 0.85 16 6 N -0.90 -28.80 13.97 55.49 0.78 -28.02 16 7 Si 0.88 23.04 24.81 -169.99 -4.22 18.82 16 8 H -0.28 -7.19 6.71 56.52 0.38 -6.81 16 9 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 10 H -0.27 -6.87 7.10 56.52 0.40 -6.46 16 11 C 0.11 2.47 4.19 -4.04 -0.02 2.45 16 12 C 0.08 1.50 3.48 -26.73 -0.09 1.41 16 13 H 0.10 2.66 8.14 -51.93 -0.42 2.23 16 14 O -0.55 -9.86 10.92 -35.23 -0.38 -10.25 16 15 C 0.08 1.29 5.07 -4.04 -0.02 1.27 16 16 N -0.60 -8.83 2.84 -181.57 -0.52 -9.34 16 17 C 0.08 0.85 9.58 59.85 0.57 1.42 16 18 C 0.53 8.40 6.74 -10.99 -0.07 8.33 16 19 O -0.52 -10.23 15.52 5.56 0.09 -10.14 16 20 C -0.15 -1.81 2.45 -91.78 -0.22 -2.03 16 21 H 0.12 1.15 6.54 -51.93 -0.34 0.81 16 22 C -0.11 -1.01 6.40 -25.10 -0.16 -1.17 16 23 C 0.10 0.94 7.61 -3.13 -0.02 0.92 16 24 N -0.72 -8.54 6.24 -59.21 -0.37 -8.91 16 25 C 0.53 7.84 7.71 -10.86 -0.08 7.76 16 26 O -0.52 -9.52 17.43 5.56 0.10 -9.42 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.04 0.93 8.01 -51.92 -0.42 0.51 16 29 H 0.03 0.59 6.82 -51.93 -0.35 0.24 16 30 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 31 H 0.04 0.78 8.07 -51.93 -0.42 0.37 16 32 H 0.06 1.44 2.92 -51.93 -0.15 1.29 16 33 H 0.35 4.73 8.80 45.56 0.40 5.13 16 34 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.09 1.64 7.37 -51.93 -0.38 1.26 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.83 7.22 -51.93 -0.38 0.46 16 38 H 0.08 0.88 6.00 -51.93 -0.31 0.57 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.92 7.54 -51.93 -0.39 0.53 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -38.90 345.63 -5.14 -44.04 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.64 Total: 6.99 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 0.26 Total: 16.54 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.55 Total: -61.80 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.20 Total: -29.80 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.22 Total: 18.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.90 -5.14 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677165478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.319 kcal (2) G-P(sol) polarization free energy of solvation -38.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds