Wall clock time and date at job start Tue Mar 31 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00041 * 2 1 4 4 C 1.50696 * 109.46920 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00196 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99746 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47098 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.46734 * 294.99562 * 8 7 6 10 10 N 1.46896 * 109.47354 * 55.00112 * 8 7 6 11 11 C 1.46898 * 111.00132 * 209.89037 * 10 8 7 12 12 C 1.50698 * 109.47313 * 184.81470 * 11 10 8 13 13 O 1.21285 * 119.99983 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00181 * 179.97438 * 12 11 10 15 15 C 1.37088 * 120.00479 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99634 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00709 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00400 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47208 * 90.00370 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00139 * 19 17 15 22 22 H 1.48495 * 109.47362 * 329.99955 * 19 17 15 23 23 C 1.53005 * 109.46958 * 174.99874 * 8 7 6 24 24 C 1.52995 * 117.51644 * 226.19412 * 23 8 7 25 25 C 1.52995 * 60.00119 * 107.48416 * 24 23 8 26 26 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47747 * 300.00639 * 1 2 3 28 28 H 1.09000 * 109.46708 * 60.00084 * 1 2 3 29 29 H 1.09001 * 109.47043 * 59.99548 * 3 2 1 30 30 H 1.08992 * 109.46800 * 299.99750 * 3 2 1 31 31 H 0.96999 * 119.99910 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47403 * 59.99754 * 7 6 4 33 33 H 1.09004 * 109.47059 * 299.99788 * 7 6 4 34 34 H 1.00902 * 111.00196 * 85.93208 * 10 8 7 35 35 H 1.09004 * 109.47078 * 304.81600 * 11 10 8 36 36 H 1.08999 * 109.46993 * 64.81295 * 11 10 8 37 37 H 0.97003 * 119.99904 * 0.02562 * 14 12 11 38 38 H 0.97001 * 120.00564 * 179.97438 * 18 17 15 39 39 H 1.08999 * 115.54831 * 80.49640 * 23 8 7 40 40 H 1.09005 * 117.49840 * 214.97624 * 24 23 8 41 41 H 1.09000 * 117.50404 * 359.97438 * 24 23 8 42 42 H 1.08999 * 117.49822 * 252.51558 * 25 24 23 43 43 H 1.09000 * 117.49903 * 107.48710 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1811 0.0003 8 6 6.3592 3.5789 0.0004 9 1 6.1103 4.0874 -0.9310 10 7 5.8327 4.3493 1.1349 11 6 5.7962 5.7847 0.8249 12 6 5.3642 6.5519 2.0479 13 8 5.1120 5.9612 3.0767 14 7 5.2590 7.8947 1.9988 15 6 4.8655 8.5927 3.1112 16 1 4.6402 8.0665 4.0271 17 6 4.7566 9.9769 3.0604 18 7 5.0304 10.6171 1.9459 19 14 4.2211 10.9279 4.5764 20 1 5.4164 11.2998 5.3753 21 1 3.5015 12.1585 4.1602 22 1 3.3197 10.0817 5.3988 23 6 7.8794 3.4603 0.1262 24 6 8.5790 4.3759 1.1326 25 6 8.4376 2.8814 1.4278 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8593 3.1725 -0.0001 32 1 6.0586 1.6398 -0.8895 33 1 6.0585 1.6406 0.8905 34 1 6.3689 4.1735 1.9714 35 1 6.7889 6.1159 0.5201 36 1 5.0889 5.9636 0.0151 37 1 5.4611 8.3673 1.1761 38 1 4.9540 11.5835 1.9102 39 1 8.4108 3.2277 -0.7966 40 1 9.5707 4.7459 0.8719 41 1 7.9564 5.0635 1.7051 42 1 7.7217 2.5854 2.1947 43 1 9.3362 2.2680 1.3613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690138557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:31 Heat of formation + Delta-G solvation = -84.786074 kcal Electronic energy + Delta-G solvation = -24300.177250 eV Core-core repulsion = 20574.725337 eV Total energy + Delta-G solvation = -3725.451913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96265 -39.16100 -37.89698 -37.44570 -34.83227 -34.12809 -33.27661 -31.29777 -30.28990 -28.51300 -26.40067 -25.76284 -23.95181 -23.48136 -22.31902 -20.62764 -19.63722 -19.35070 -18.00266 -17.33564 -17.05282 -16.65520 -16.42701 -15.97562 -15.41367 -15.16954 -14.86119 -14.62923 -14.44584 -14.30448 -13.88917 -13.67368 -13.29028 -13.03310 -12.63946 -12.32563 -12.13555 -11.96695 -11.71425 -11.63695 -11.62496 -11.51727 -11.39616 -11.08980 -10.44386 -10.41862 -10.27952 -10.11178 -9.98457 -9.75114 -9.57576 -8.97711 -8.55567 -8.23031 -8.03222 -6.48147 -3.89188 2.64883 2.81372 3.13197 3.22686 3.28227 3.65984 3.82514 3.93975 4.04325 4.25066 4.61156 4.72616 4.78425 4.81433 4.95177 5.02171 5.03873 5.09965 5.13036 5.18079 5.18766 5.28518 5.39955 5.44038 5.59747 5.68522 5.75055 5.80338 5.87254 5.95533 6.02967 6.07105 6.19287 6.46545 6.79327 7.07977 7.49162 7.52151 7.59423 7.99252 8.27963 8.53577 9.11205 9.46894 9.97637 10.69332 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003423 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.402225 B = 8177.979527 C = 9952.558053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.532 6.532 6 N -0.711 5.711 7 C 0.141 3.859 8 C 0.101 3.899 9 H 0.088 0.912 10 N -0.665 5.665 11 C 0.045 3.955 12 C 0.437 3.563 13 O -0.585 6.585 14 N -0.561 5.561 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.182 4.182 24 C -0.184 4.184 25 C -0.177 4.177 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.356 0.644 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 -12.594 -8.392 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.408 6.408 6 N -0.364 5.364 7 C 0.016 3.984 8 C -0.010 4.010 9 H 0.107 0.893 10 N -0.299 5.299 11 C -0.088 4.088 12 C 0.223 3.777 13 O -0.469 6.469 14 N -0.197 5.197 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.178 4.178 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.202 4.202 24 C -0.221 4.221 25 C -0.214 4.214 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.179 0.821 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.976 -13.842 -7.885 15.960 hybrid contribution 0.464 1.921 0.217 1.988 sum -0.513 -11.920 -7.668 14.183 Atomic orbital electron populations 1.22830 0.80510 1.03131 1.00228 1.87998 1.19681 1.25453 1.95461 1.22255 0.91900 0.86774 1.02877 1.20181 0.88614 0.84625 0.76843 1.90708 1.74698 1.26655 1.48743 1.45663 1.06898 1.08981 1.74871 1.21237 0.79092 0.95903 1.02147 1.21392 0.89858 0.94058 0.95719 0.89344 1.60302 1.58327 1.06000 1.05299 1.21818 1.00617 0.88162 0.98166 1.19801 0.85301 0.83056 0.89573 1.90537 1.55276 1.68589 1.32512 1.41860 1.59173 1.04725 1.13969 1.19697 1.42074 0.89078 0.92165 0.87914 1.25262 0.97448 0.96811 0.98317 1.69608 1.48902 1.09481 1.26181 0.85862 0.78808 0.78771 0.80894 1.20396 1.20892 1.19377 1.22944 0.96054 1.06219 0.94995 1.23189 1.02268 0.93774 1.02876 1.22969 1.03168 0.96307 0.98920 0.89242 0.93684 0.93872 0.89870 0.90329 0.75542 0.91298 0.91309 0.82117 0.93126 0.89575 0.77450 0.91813 0.87382 0.88570 0.87850 0.88300 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.68 10.24 -55.14 -0.56 -5.25 16 3 C 0.04 0.45 6.42 36.00 0.23 0.68 16 4 C 0.51 7.03 7.91 -10.99 -0.09 6.94 16 5 O -0.53 -9.51 16.50 -14.35 -0.24 -9.74 16 6 N -0.71 -8.40 5.39 -60.29 -0.32 -8.72 16 7 C 0.14 1.63 5.32 -4.04 -0.02 1.61 16 8 C 0.10 1.10 2.61 -67.71 -0.18 0.92 16 9 H 0.09 0.88 7.78 -51.93 -0.40 0.47 16 10 N -0.66 -9.33 5.22 -107.99 -0.56 -9.89 16 11 C 0.04 0.70 5.10 -4.98 -0.03 0.67 16 12 C 0.44 9.59 7.81 -10.99 -0.09 9.50 16 13 O -0.58 -14.98 15.67 5.55 0.09 -14.89 16 14 N -0.56 -13.48 5.29 -10.97 -0.06 -13.54 16 15 C -0.30 -8.09 9.68 -14.94 -0.14 -8.24 16 16 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -23.77 13.05 55.50 0.72 -23.05 16 19 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.18 -1.85 5.79 -90.62 -0.52 -2.37 16 24 C -0.18 -2.10 8.94 -26.74 -0.24 -2.34 16 25 C -0.18 -1.86 9.30 -26.73 -0.25 -2.11 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.41 4.40 8.14 -40.82 -0.33 4.06 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.90 7.50 -51.93 -0.39 0.51 16 34 H 0.36 5.58 5.27 -39.29 -0.21 5.37 16 35 H 0.05 0.73 6.67 -51.93 -0.35 0.39 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 9.02 7.90 -40.82 -0.32 8.70 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.44 5.10 -51.93 -0.26 1.17 16 42 H 0.10 1.14 7.29 -51.93 -0.38 0.76 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -33.07 360.13 -7.22 -40.29 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -6.38 Total: 16.74 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.31 Total: 7.13 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.22 Total: -55.20 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.71 Total: -29.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.07 -7.22 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690138557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.496 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds