Wall clock time and date at job start Tue Mar 31 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00041 * 2 1 4 4 C 1.50696 * 109.46920 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00196 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99746 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47098 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.46734 * 294.99562 * 8 7 6 10 10 N 1.46896 * 109.47354 * 55.00112 * 8 7 6 11 11 C 1.46898 * 111.00132 * 209.89037 * 10 8 7 12 12 C 1.50698 * 109.47313 * 184.81470 * 11 10 8 13 13 O 1.21285 * 119.99983 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00181 * 179.97438 * 12 11 10 15 15 C 1.37088 * 120.00479 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99634 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00709 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00400 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47208 * 90.00370 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00139 * 19 17 15 22 22 H 1.48495 * 109.47362 * 329.99955 * 19 17 15 23 23 C 1.53005 * 109.46958 * 174.99874 * 8 7 6 24 24 C 1.52995 * 117.51644 * 226.19412 * 23 8 7 25 25 C 1.52995 * 60.00119 * 107.48416 * 24 23 8 26 26 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47747 * 300.00639 * 1 2 3 28 28 H 1.09000 * 109.46708 * 60.00084 * 1 2 3 29 29 H 1.09001 * 109.47043 * 59.99548 * 3 2 1 30 30 H 1.08992 * 109.46800 * 299.99750 * 3 2 1 31 31 H 0.96999 * 119.99910 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47403 * 59.99754 * 7 6 4 33 33 H 1.09004 * 109.47059 * 299.99788 * 7 6 4 34 34 H 1.00902 * 111.00196 * 85.93208 * 10 8 7 35 35 H 1.09004 * 109.47078 * 304.81600 * 11 10 8 36 36 H 1.08999 * 109.46993 * 64.81295 * 11 10 8 37 37 H 0.97003 * 119.99904 * 0.02562 * 14 12 11 38 38 H 0.97001 * 120.00564 * 179.97438 * 18 17 15 39 39 H 1.08999 * 115.54831 * 80.49640 * 23 8 7 40 40 H 1.09005 * 117.49840 * 214.97624 * 24 23 8 41 41 H 1.09000 * 117.50404 * 359.97438 * 24 23 8 42 42 H 1.08999 * 117.49822 * 252.51558 * 25 24 23 43 43 H 1.09000 * 117.49903 * 107.48710 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1811 0.0003 8 6 6.3592 3.5789 0.0004 9 1 6.1103 4.0874 -0.9310 10 7 5.8327 4.3493 1.1349 11 6 5.7962 5.7847 0.8249 12 6 5.3642 6.5519 2.0479 13 8 5.1120 5.9612 3.0767 14 7 5.2590 7.8947 1.9988 15 6 4.8655 8.5927 3.1112 16 1 4.6402 8.0665 4.0271 17 6 4.7566 9.9769 3.0604 18 7 5.0304 10.6171 1.9459 19 14 4.2211 10.9279 4.5764 20 1 5.4164 11.2998 5.3753 21 1 3.5015 12.1585 4.1602 22 1 3.3197 10.0817 5.3988 23 6 7.8794 3.4603 0.1262 24 6 8.5790 4.3759 1.1326 25 6 8.4376 2.8814 1.4278 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8593 3.1725 -0.0001 32 1 6.0586 1.6398 -0.8895 33 1 6.0585 1.6406 0.8905 34 1 6.3689 4.1735 1.9714 35 1 6.7889 6.1159 0.5201 36 1 5.0889 5.9636 0.0151 37 1 5.4611 8.3673 1.1761 38 1 4.9540 11.5835 1.9102 39 1 8.4108 3.2277 -0.7966 40 1 9.5707 4.7459 0.8719 41 1 7.9564 5.0635 1.7051 42 1 7.7217 2.5854 2.1947 43 1 9.3362 2.2680 1.3613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690138557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:30 Heat of formation + Delta-G solvation = -110.592277 kcal Electronic energy + Delta-G solvation = -24301.296291 eV Core-core repulsion = 20574.725337 eV Total energy + Delta-G solvation = -3726.570954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01861 -40.37635 -39.39592 -38.33590 -36.02600 -35.81627 -34.52054 -33.23198 -31.32698 -29.43135 -27.77382 -26.72376 -25.52570 -24.39667 -23.20595 -21.64939 -21.10224 -20.52186 -19.91418 -18.33458 -18.17016 -17.57071 -17.46740 -17.24375 -16.52846 -16.47491 -16.22529 -15.87652 -15.70237 -15.57129 -15.21137 -14.91919 -14.57135 -14.00387 -13.87910 -13.54848 -13.44720 -13.21774 -13.00391 -12.89699 -12.66870 -12.60746 -12.40267 -12.33966 -12.32820 -12.12276 -11.49701 -11.28265 -11.00717 -10.81769 -10.75412 -10.31915 -10.00701 -9.99682 -9.40853 -8.45848 -5.93899 1.38128 1.42765 1.54577 1.61188 1.93233 2.07588 2.29404 2.80532 2.88386 3.19032 3.22266 3.51115 3.75598 3.84789 3.89807 3.95031 4.18466 4.22842 4.29367 4.32691 4.36230 4.50161 4.53036 4.57363 4.58213 4.65817 4.75998 4.79869 4.86908 4.95328 5.00351 5.15677 5.19896 5.42391 5.48480 5.89079 6.05586 6.09881 6.31338 6.61396 6.63056 7.14418 7.27901 7.58631 8.13795 8.71320 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003423 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.402225 B = 8177.979527 C = 9952.558053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.043 3.957 4 C 0.506 3.494 5 O -0.581 6.581 6 N -0.701 5.701 7 C 0.142 3.858 8 C 0.108 3.892 9 H 0.111 0.889 10 N -0.671 5.671 11 C 0.062 3.938 12 C 0.438 3.562 13 O -0.625 6.625 14 N -0.572 5.572 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.989 3.011 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.169 4.169 24 C -0.192 4.192 25 C -0.178 4.178 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.345 0.655 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -12.148 -9.821 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.036 4.036 4 C 0.293 3.707 5 O -0.461 6.461 6 N -0.354 5.354 7 C 0.018 3.982 8 C -0.002 4.002 9 H 0.129 0.871 10 N -0.305 5.305 11 C -0.070 4.070 12 C 0.226 3.774 13 O -0.511 6.511 14 N -0.209 5.209 15 C -0.461 4.461 16 H 0.096 0.904 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.813 3.187 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.189 4.189 24 C -0.230 4.230 25 C -0.215 4.215 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.134 -13.364 -9.347 16.348 hybrid contribution 0.512 1.719 0.670 1.915 sum -0.622 -11.645 -8.677 14.535 Atomic orbital electron populations 1.23034 0.78444 1.04178 1.01521 1.87947 1.22033 1.26643 1.95774 1.22355 0.89692 0.86664 1.04904 1.20789 0.90040 0.84116 0.75779 1.90679 1.75783 1.28422 1.51248 1.45651 1.07025 1.08962 1.73729 1.21232 0.79064 0.96166 1.01749 1.21424 0.90335 0.93227 0.95243 0.87130 1.60295 1.58938 1.05253 1.06041 1.21689 1.01942 0.88161 0.95229 1.20887 0.83077 0.82531 0.90916 1.90511 1.56479 1.69296 1.34838 1.41913 1.59956 1.05560 1.13460 1.19625 1.44043 0.89944 0.92534 0.90448 1.25965 0.97044 0.97077 1.00981 1.69661 1.49045 1.09927 1.27363 0.84988 0.78451 0.77584 0.77706 1.19855 1.19605 1.19829 1.22992 0.95422 1.04854 0.95588 1.23108 1.02586 0.93707 1.03554 1.22985 1.03551 0.95956 0.99011 0.88478 0.92790 0.92090 0.88580 0.87230 0.74693 0.90307 0.93149 0.83314 0.91327 0.86908 0.76939 0.91344 0.84983 0.87420 0.90554 0.89874 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.99 10.24 -129.94 -1.33 -11.32 16 3 C 0.04 0.87 6.42 71.23 0.46 1.33 16 4 C 0.51 13.55 7.91 87.66 0.69 14.24 16 5 O -0.58 -20.99 16.50 16.01 0.26 -20.73 16 6 N -0.70 -15.61 5.39 -463.05 -2.50 -18.10 16 7 C 0.14 3.10 5.32 86.38 0.46 3.56 16 8 C 0.11 2.10 2.61 44.92 0.12 2.22 16 9 H 0.11 1.75 7.78 -2.39 -0.02 1.73 16 10 N -0.67 -18.01 5.22 -495.57 -2.59 -20.59 16 11 C 0.06 1.82 5.10 85.56 0.44 2.26 16 12 C 0.44 19.24 7.81 87.66 0.68 19.92 16 13 O -0.62 -32.67 15.67 -3.05 -0.05 -32.72 16 14 N -0.57 -27.67 5.29 -307.00 -1.62 -29.30 16 15 C -0.33 -18.18 9.68 84.04 0.81 -17.37 16 16 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 17 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 18 N -0.92 -48.03 13.05 21.66 0.28 -47.74 16 19 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.17 -3.01 5.79 -10.79 -0.06 -3.08 16 24 C -0.19 -4.14 8.94 30.59 0.27 -3.86 16 25 C -0.18 -3.56 9.30 30.59 0.28 -3.27 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.42 8.09 8.14 -92.71 -0.75 7.34 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.30 7.50 -2.38 -0.02 1.29 16 34 H 0.35 10.81 5.27 -89.69 -0.47 10.34 16 35 H 0.07 1.83 6.67 -2.39 -0.02 1.82 16 36 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.40 18.18 7.90 -92.71 -0.73 17.45 16 38 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.08 2.10 5.10 -2.39 -0.01 2.09 16 42 H 0.08 1.93 7.29 -2.39 -0.02 1.92 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.28 360.13 -0.54 -73.82 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -0.91 Total: 45.31 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.87 Total: 17.46 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.42 Total: -115.73 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -1.11 Total: -64.77 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.28 -0.54 -73.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690138557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.768 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds