Wall clock time and date at job start Tue Mar 31 2020 03:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99799 * 2 1 4 4 C 1.50694 * 109.47189 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00256 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99559 * 0.02562 * 6 4 3 8 8 C 1.46499 * 120.00420 * 180.02562 * 6 4 3 9 9 C 1.50697 * 109.47053 * 90.00074 * 8 6 4 10 10 O 1.21290 * 120.00131 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99991 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00068 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00146 * 180.02562 * 11 9 8 14 14 C 1.53496 * 114.21138 * 119.99825 * 13 11 9 15 15 N 1.47070 * 87.98076 * 87.71671 * 14 13 11 16 16 C 1.36941 * 136.05440 * 207.08124 * 15 14 13 17 17 H 1.07997 * 120.00412 * 7.86028 * 16 15 14 18 18 C 1.38814 * 119.99634 * 187.85423 * 16 15 14 19 19 N 1.31616 * 119.99939 * 173.06607 * 18 16 15 20 20 Si 1.86796 * 120.00336 * 353.06587 * 18 16 15 21 21 H 1.48499 * 109.47209 * 175.20930 * 20 18 16 22 22 H 1.48510 * 109.47106 * 295.21158 * 20 18 16 23 23 H 1.48503 * 109.47106 * 55.20691 * 20 18 16 24 24 C 1.47063 * 87.88519 * 27.34830 * 15 14 13 25 25 H 1.08999 * 109.47209 * 299.99803 * 1 2 3 26 26 H 1.08997 * 109.47309 * 60.00635 * 1 2 3 27 27 H 1.09004 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46871 * 59.99678 * 3 2 1 29 29 H 1.08994 * 109.46901 * 299.99985 * 3 2 1 30 30 H 1.09000 * 109.47248 * 269.99703 * 7 6 4 31 31 H 1.08994 * 109.47351 * 29.99530 * 7 6 4 32 32 H 1.09002 * 109.47025 * 149.99656 * 7 6 4 33 33 H 1.09003 * 109.46833 * 330.00023 * 8 6 4 34 34 H 1.09000 * 109.46779 * 210.00182 * 8 6 4 35 35 H 1.08993 * 109.47136 * 270.00131 * 12 11 9 36 36 H 1.08998 * 109.46845 * 29.99973 * 12 11 9 37 37 H 1.09001 * 109.46872 * 149.99989 * 12 11 9 38 38 H 1.09007 * 113.27923 * 346.93027 * 13 11 9 39 39 H 1.09000 * 113.46265 * 332.94223 * 14 13 11 40 40 H 1.08991 * 113.52116 * 202.50467 * 14 13 11 41 41 H 0.97007 * 119.99810 * 1.51422 * 19 18 16 42 42 H 1.08997 * 113.47359 * 87.43609 * 24 15 14 43 43 H 1.09003 * 113.46485 * 217.88067 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2764 2.2970 0.0002 7 6 3.6462 3.6195 -0.0003 8 6 5.7368 2.1814 0.0003 9 6 6.2375 2.1412 -1.4205 10 8 5.4519 2.2035 -2.3424 11 7 7.5585 2.0371 -1.6667 12 6 8.5076 1.9624 -0.5532 13 6 8.0454 1.9986 -3.0479 14 6 9.0077 3.1390 -3.4081 15 7 10.1081 2.2955 -2.9176 16 6 11.3500 2.5085 -2.3811 17 1 11.6615 3.5093 -2.1211 18 6 12.2083 1.4379 -2.1715 19 7 13.4478 1.6540 -1.7854 20 14 11.6042 -0.3096 -2.4374 21 1 12.7347 -1.2563 -2.2617 22 1 10.5397 -0.6210 -1.4498 23 1 11.0578 -0.4407 -3.8120 24 6 9.2907 1.1228 -3.2629 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6884 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.4900 3.9472 -1.0280 31 1 2.6865 3.5650 0.5135 32 1 4.2934 4.3305 0.5134 33 1 6.0287 1.2656 0.5145 34 1 6.1692 3.0401 0.5138 35 1 8.8236 2.9683 -0.2771 36 1 8.0282 1.4848 0.3013 37 1 9.3769 1.3784 -0.8554 38 1 7.2540 1.8338 -3.7792 39 1 8.8540 4.0403 -2.8148 40 1 9.0602 3.3423 -4.4776 41 1 13.7552 2.5602 -1.6261 42 1 9.4172 0.7938 -4.2943 43 1 9.3780 0.3065 -2.5458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699712774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:11 Heat of formation + Delta-G solvation = -19.710754 kcal Electronic energy + Delta-G solvation = -25243.972239 eV Core-core repulsion = 21521.342204 eV Total energy + Delta-G solvation = -3722.630035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54750 -39.66180 -38.15546 -37.48810 -35.52533 -34.27933 -32.37124 -30.34090 -28.59005 -27.91061 -26.72135 -26.28011 -25.53773 -25.34061 -22.67030 -20.72940 -19.46460 -18.49238 -17.69398 -17.55299 -17.15796 -16.91443 -16.51397 -16.15310 -15.64627 -15.25586 -15.08773 -14.61934 -14.39760 -13.81319 -13.74201 -13.36768 -13.19641 -13.12640 -13.03498 -12.72501 -12.65351 -12.47209 -12.13202 -11.89406 -11.73455 -11.45146 -11.31249 -10.90162 -10.60694 -10.38386 -10.13125 -9.96371 -9.90994 -9.37194 -9.23500 -8.93583 -8.79095 -8.19073 -7.18559 -6.36685 -3.27868 2.29038 2.51380 2.77590 3.28092 3.36977 3.42127 3.61282 3.63666 4.30326 4.54084 4.60314 4.62784 4.76011 4.80850 4.82802 4.95459 4.99644 5.02458 5.15653 5.16296 5.26905 5.32878 5.37651 5.44546 5.56882 5.79943 5.89982 5.98707 6.07127 6.20868 6.21688 6.32885 6.36074 6.60895 6.63433 6.98172 7.05943 7.07983 7.72188 7.98313 8.18894 8.37321 8.92662 9.45041 10.32437 11.15567 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.003429 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.513255 B = 8164.745167 C = 8472.976533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.077 3.923 8 C 0.101 3.899 9 C 0.498 3.502 10 O -0.544 6.544 11 N -0.579 5.579 12 C 0.079 3.921 13 C 0.098 3.902 14 C 0.111 3.889 15 N -0.626 5.626 16 C -0.303 4.303 17 H 0.082 0.918 18 C -0.023 4.023 19 N -0.932 5.932 20 Si 1.066 2.934 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.087 3.913 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.261 0.739 42 H 0.058 0.942 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.433 4.101 6.166 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.306 3.694 5 O -0.387 6.387 6 N -0.335 5.335 7 C -0.066 4.066 8 C -0.026 4.026 9 C 0.285 3.715 10 O -0.421 6.421 11 N -0.311 5.311 12 C -0.064 4.064 13 C -0.007 4.007 14 C -0.016 4.016 15 N -0.355 5.355 16 C -0.430 4.430 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.574 5.574 20 Si 0.899 3.101 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.214 1.214 24 C -0.039 4.039 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.734 1.821 5.859 24.514 hybrid contribution -0.423 2.107 -0.209 2.159 sum -24.157 3.928 5.649 25.118 Atomic orbital electron populations 1.22837 0.80368 1.03367 1.00062 1.88031 1.19776 1.25247 1.95395 1.22245 0.91478 0.86941 1.02477 1.20201 0.88753 0.84073 0.76337 1.90748 1.74379 1.26151 1.47390 1.47314 1.05364 1.06607 1.74245 1.21896 0.98428 0.83505 1.02738 1.21382 0.80364 1.05755 0.95057 1.21016 0.82073 0.76604 0.91818 1.90645 1.55002 1.50430 1.46064 1.47383 1.05601 1.71104 1.07017 1.21933 0.94213 1.02876 0.87362 1.22511 0.95802 0.99347 0.83055 1.22759 0.86763 0.94726 0.97361 1.46140 1.16593 1.01196 1.71563 1.20077 0.88626 0.96150 1.38103 0.89996 1.25685 0.93523 1.03307 0.99717 1.70927 1.14019 1.23422 1.49032 0.83767 0.73989 0.76020 0.76344 1.22173 1.22033 1.21371 1.23185 0.88436 0.93086 0.99221 0.93864 0.93751 0.89053 0.90274 0.89973 0.91729 0.90968 0.90546 0.86695 0.87200 0.92272 0.92423 0.88388 0.87764 0.93568 0.93514 0.92880 0.92469 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.37 -4.41 10.24 -55.14 -0.56 -4.98 16 3 C 0.05 0.47 4.97 36.00 0.18 0.65 16 4 C 0.52 7.14 7.75 -10.99 -0.09 7.06 16 5 O -0.51 -9.51 16.08 -14.35 -0.23 -9.74 16 6 N -0.60 -6.94 2.36 -182.96 -0.43 -7.37 16 7 C 0.08 0.55 10.29 59.85 0.62 1.16 16 8 C 0.10 1.25 4.48 -5.20 -0.02 1.23 16 9 C 0.50 8.22 7.74 -10.99 -0.09 8.13 16 10 O -0.54 -10.44 15.94 5.55 0.09 -10.36 16 11 N -0.58 -10.07 3.12 -173.56 -0.54 -10.62 16 12 C 0.08 1.31 9.35 59.85 0.56 1.87 16 13 C 0.10 1.84 4.67 -67.68 -0.32 1.52 16 14 C 0.11 2.19 8.31 -8.50 -0.07 2.12 16 15 N -0.63 -14.71 2.40 -184.63 -0.44 -15.15 16 16 C -0.30 -8.30 10.70 -15.06 -0.16 -8.46 16 17 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 18 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 19 N -0.93 -28.65 13.71 55.49 0.76 -27.89 16 20 Si 1.07 26.33 24.77 -169.99 -4.21 22.12 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -6.74 6.53 56.52 0.37 -6.37 16 23 H -0.29 -6.72 6.16 56.52 0.35 -6.38 16 24 C 0.09 1.84 4.73 -8.37 -0.04 1.80 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.50 7.40 -51.93 -0.38 0.11 16 29 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 32 H 0.08 0.41 7.89 -51.93 -0.41 0.00 16 33 H 0.12 1.50 6.68 -51.93 -0.35 1.15 16 34 H 0.11 1.00 7.86 -51.93 -0.41 0.60 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.10 1.99 4.97 -51.93 -0.26 1.74 16 38 H 0.10 1.90 7.29 -51.93 -0.38 1.52 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 42 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 43 H 0.06 1.23 3.90 -51.93 -0.20 1.03 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -37.29 346.32 -5.26 -42.55 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.50 Total: -1.42 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 1.59 Total: 17.64 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.66 Total: -61.03 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.71 Total: -25.08 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.21 Total: 22.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.29 -5.26 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699712774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.839 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds