Wall clock time and date at job start Tue Mar 31 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34632 * 116.99834 * 2 1 4 4 O 1.21509 * 120.00265 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00215 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00394 * 179.97438 * 5 3 2 7 7 C 1.50708 * 109.46974 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99905 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99871 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00400 * 180.02562 * 9 7 6 11 11 H 1.09009 * 110.01355 * 326.39352 * 10 9 7 12 12 C 1.53875 * 110.03142 * 87.83166 * 10 9 7 13 13 C 1.54265 * 106.59842 * 119.28875 * 12 10 9 14 14 C 1.54896 * 104.19299 * 23.60911 * 13 12 10 15 15 C 1.54262 * 110.03733 * 205.00348 * 10 9 7 16 16 H 1.09002 * 110.48340 * 335.91457 * 15 10 9 17 17 C 1.52996 * 110.48921 * 98.42255 * 15 10 9 18 18 N 1.46498 * 109.47059 * 184.99914 * 17 15 10 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 H 1.08997 * 109.46864 * 300.00365 * 1 2 3 28 28 H 1.08999 * 109.46902 * 60.00018 * 1 2 3 29 29 H 1.08992 * 109.47137 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99729 * 359.97438 * 5 3 2 31 31 H 1.09003 * 109.46862 * 60.00448 * 6 5 3 32 32 H 1.08995 * 109.47416 * 299.99721 * 6 5 3 33 33 H 0.97003 * 120.00120 * 0.02562 * 9 7 6 34 34 H 1.09004 * 110.03192 * 238.57342 * 12 10 9 35 35 H 1.09001 * 110.03516 * 0.02562 * 12 10 9 36 36 H 1.09000 * 110.48744 * 142.28352 * 13 12 10 37 37 H 1.08994 * 110.48769 * 264.80024 * 13 12 10 38 38 H 1.09006 * 110.75259 * 203.74164 * 14 13 12 39 39 H 1.09008 * 110.75311 * 80.37492 * 14 13 12 40 40 H 1.09004 * 109.47066 * 65.00182 * 17 15 10 41 41 H 1.08994 * 109.46974 * 305.00330 * 17 15 10 42 42 H 0.97001 * 120.00384 * 0.02562 * 18 17 15 43 43 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.5683 2.3780 0.0013 8 8 6.0318 1.2573 0.0022 9 7 6.3893 3.4468 0.0006 10 6 7.8417 3.2550 0.0014 11 1 8.0996 2.3610 0.5693 12 6 8.3577 3.1302 -1.4429 13 6 9.3490 4.2924 -1.6586 14 6 9.8260 4.6548 -0.2302 15 6 8.5375 4.4885 0.6130 16 1 7.9024 5.3695 0.5206 17 6 8.8870 4.2335 2.0805 18 7 9.4366 5.4563 2.6712 19 6 9.8182 5.4697 3.9862 20 1 9.7182 4.5776 4.5867 21 6 10.3336 6.6300 4.5475 22 7 10.7009 6.6428 5.8113 23 14 10.5058 8.1732 3.5091 24 1 9.2603 8.9762 3.6052 25 1 11.6523 8.9771 4.0036 26 1 10.7419 7.7933 2.0931 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9375 0.4567 0.0013 31 1 3.7810 3.1331 0.8895 32 1 3.7818 3.1320 -0.8905 33 1 6.0186 4.3432 -0.0005 34 1 8.8667 2.1756 -1.5764 35 1 7.5275 3.2129 -2.1445 36 1 10.1903 3.9675 -2.2708 37 1 8.8465 5.1414 -2.1220 38 1 10.1828 5.6841 -0.1917 39 1 10.5993 3.9639 0.1057 40 1 9.6263 3.4350 2.1444 41 1 7.9879 3.9404 2.6224 42 1 9.5260 6.2577 2.1320 43 1 11.0614 7.4535 6.2035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753880752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:31 Heat of formation + Delta-G solvation = -138.596976 kcal Electronic energy + Delta-G solvation = -24111.204738 eV Core-core repulsion = 20383.419410 eV Total energy + Delta-G solvation = -3727.785329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71959 -41.04639 -39.34788 -37.70912 -36.48841 -35.72807 -34.78957 -33.55638 -30.65559 -30.24266 -28.59767 -27.37442 -26.17587 -23.69627 -22.69418 -22.08146 -21.38466 -20.94499 -20.20795 -19.59295 -18.21635 -17.76675 -17.68633 -17.49105 -16.60051 -16.52299 -16.18482 -16.05148 -15.37277 -15.12968 -15.01336 -14.80624 -14.72175 -14.48572 -14.21448 -13.82381 -13.63220 -13.45059 -12.97161 -12.94199 -12.77901 -12.39979 -12.13938 -11.95397 -11.89332 -11.83555 -11.82067 -11.68426 -11.61897 -11.41353 -11.10552 -10.95897 -10.47397 -10.10526 -9.30523 -8.02808 -5.37113 0.99939 1.38247 1.43352 1.44192 1.50871 1.63142 2.13453 2.49239 3.23100 3.27863 3.35055 3.57735 3.66525 3.90677 3.94828 4.25514 4.27646 4.35449 4.37959 4.38118 4.47986 4.53092 4.59719 4.61859 4.69329 4.74353 4.95543 4.99192 5.02542 5.09496 5.17624 5.25627 5.29639 5.31371 5.50059 5.57453 5.74811 6.20630 6.21429 6.42613 7.07955 7.09065 7.15391 7.82725 8.04348 9.18953 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.002889 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.547312 B = 9689.960347 C =10689.369376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.649 3.351 4 O -0.601 6.601 5 N -0.695 5.695 6 C 0.120 3.880 7 C 0.513 3.487 8 O -0.570 6.570 9 N -0.703 5.703 10 C 0.153 3.847 11 H 0.073 0.927 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.117 4.117 15 C -0.096 4.096 16 H 0.097 0.903 17 C 0.163 3.837 18 N -0.752 5.752 19 C -0.238 4.238 20 H 0.049 0.951 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.244 1.244 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.420 0.580 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.418 0.582 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.369 0.631 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.106 -8.965 -21.090 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.402 3.598 4 O -0.492 6.492 5 N -0.357 5.357 6 C -0.006 4.006 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.355 5.355 10 C 0.047 3.953 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.115 4.115 16 H 0.115 0.885 17 C 0.037 3.963 18 N -0.398 5.398 19 C -0.369 4.369 20 H 0.067 0.933 21 C -0.258 4.258 22 N -0.637 5.637 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.168 1.168 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.258 0.742 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.203 0.797 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.132 -9.412 -20.892 28.024 hybrid contribution 0.344 0.925 0.470 1.093 sum -15.788 -8.487 -20.422 27.173 Atomic orbital electron populations 1.23541 0.72401 1.05730 1.02815 1.86268 1.26085 1.29922 1.86650 1.18084 0.83236 0.82413 0.76037 1.90994 1.65262 1.35729 1.57202 1.44249 1.03023 1.10961 1.77506 1.21127 0.87804 0.84688 1.06945 1.20586 0.89140 0.84838 0.75463 1.90712 1.77908 1.25015 1.51344 1.45933 1.06204 1.09611 1.73725 1.21536 0.78691 0.97968 0.97071 0.90858 1.22478 0.99574 0.99460 0.94737 1.22322 0.98828 0.98094 0.95769 1.22495 0.96050 1.01827 0.95132 1.22364 0.97995 0.98081 0.93083 0.88501 1.20779 0.95260 0.88105 0.92148 1.42604 1.77444 1.11100 1.08674 1.19010 1.33582 0.97081 0.87208 0.93279 1.25601 1.01341 1.01645 0.97253 1.69905 1.50613 1.29091 1.14063 0.85332 0.77340 0.79114 0.79529 1.20183 1.22479 1.16840 0.91952 0.91613 0.84700 0.74161 0.86851 0.85737 0.74411 0.91451 0.90295 0.90518 0.90057 0.91431 0.92065 0.96465 0.96566 0.79742 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.38 -7.08 10.62 -55.42 -0.59 -7.67 16 3 C 0.65 14.26 8.75 129.79 1.14 15.40 16 4 O -0.60 -16.00 16.13 19.81 0.32 -15.68 16 5 N -0.70 -13.33 5.53 -594.61 -3.29 -16.62 16 6 C 0.12 1.91 6.15 85.64 0.53 2.43 16 7 C 0.51 10.16 7.90 87.66 0.69 10.85 16 8 O -0.57 -15.43 15.32 -3.02 -0.05 -15.48 16 9 N -0.70 -12.25 4.98 -439.10 -2.19 -14.43 16 10 C 0.15 3.32 2.82 45.71 0.13 3.45 16 11 H 0.07 2.00 7.26 -2.38 -0.02 1.98 16 12 C -0.12 -2.22 6.59 31.32 0.21 -2.01 16 13 C -0.11 -1.88 6.83 31.67 0.22 -1.66 16 14 C -0.12 -2.73 6.19 31.89 0.20 -2.53 16 15 C -0.10 -2.40 2.59 -9.72 -0.03 -2.42 16 16 H 0.10 2.15 7.74 -2.39 -0.02 2.13 16 17 C 0.16 5.98 5.54 86.38 0.48 6.45 16 18 N -0.75 -34.02 5.30 -343.46 -1.82 -35.84 16 19 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 20 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 22 N -0.99 -63.56 13.97 21.65 0.30 -63.26 16 23 Si 0.96 44.33 27.74 68.60 1.90 46.23 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.24 -9.84 6.52 99.48 0.65 -9.19 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.42 8.10 7.55 -92.71 -0.70 7.40 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 5.01 8.36 -92.71 -0.77 4.23 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 1.25 7.92 -2.39 -0.02 1.23 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.06 1.60 7.97 -2.38 -0.02 1.58 16 40 H 0.02 0.68 8.02 -2.38 -0.02 0.66 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.37 15.44 5.50 -92.71 -0.51 14.93 16 43 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -77.77 358.28 -0.31 -78.08 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -1.00 Total: 29.15 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.10 Total: 15.52 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.99 Total: -130.15 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.31 Total: -38.82 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Total: -77.77 -0.31 -78.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753880752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.521 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds