Wall clock time and date at job start Tue Mar 31 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.34776 * 119.99812 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00125 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.50695 * 109.47083 * 180.02562 * 6 4 3 8 8 O 1.21276 * 120.00174 * 359.72458 * 7 6 4 9 9 N 1.34779 * 120.00003 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00014 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47128 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.67231 * 300.08880 * 11 10 9 13 13 C 1.53296 * 109.68261 * 179.53307 * 11 10 9 14 14 O 1.42954 * 109.22102 * 187.97281 * 13 11 10 15 15 C 1.42965 * 114.17029 * 62.58184 * 14 13 11 16 16 C 1.53301 * 109.22100 * 297.41869 * 15 14 13 17 17 N 1.47151 * 108.38364 * 52.29874 * 16 15 14 18 18 C 1.36936 * 120.98192 * 129.48844 * 17 16 15 19 19 H 1.08001 * 119.99918 * 211.18368 * 18 17 16 20 20 C 1.38808 * 119.99818 * 31.17883 * 18 17 16 21 21 N 1.31623 * 120.00281 * 10.72886 * 20 18 17 22 22 Si 1.86807 * 120.00213 * 190.73053 * 20 18 17 23 23 H 1.48502 * 109.46813 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47194 * 119.99898 * 22 20 18 25 25 H 1.48500 * 109.47275 * 240.00343 * 22 20 18 26 26 H 1.09005 * 109.47240 * 59.99783 * 1 2 3 27 27 H 1.09004 * 109.47380 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47503 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47060 * 239.99787 * 2 1 3 30 30 H 1.08999 * 109.46795 * 119.99666 * 2 1 3 31 31 H 0.97007 * 120.00032 * 359.97438 * 3 2 1 32 32 H 1.09006 * 109.46792 * 60.00016 * 6 4 3 33 33 H 1.09000 * 109.46980 * 300.00513 * 6 4 3 34 34 H 0.97001 * 120.00054 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46696 * 299.99192 * 10 9 7 36 36 H 1.08989 * 109.47611 * 59.99562 * 10 9 7 37 37 H 1.08999 * 109.51120 * 307.89614 * 13 11 10 38 38 H 1.09000 * 109.50995 * 68.04560 * 13 11 10 39 39 H 1.08994 * 109.51487 * 177.49340 * 15 14 13 40 40 H 1.09001 * 109.51099 * 57.33656 * 15 14 13 41 41 H 1.09001 * 109.68002 * 292.57475 * 16 15 14 42 42 H 1.08994 * 109.68067 * 172.02391 * 16 15 14 43 43 H 0.96997 * 120.00120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9591 1.9980 0.0056 9 7 6.0266 4.2155 0.0001 10 6 7.4916 4.2154 -0.0003 11 6 8.0016 5.6580 -0.0008 12 1 7.6385 6.1753 -0.8889 13 6 9.5345 5.6637 0.0105 14 8 9.9989 7.0027 0.1972 15 6 9.6131 7.5876 1.4434 16 6 8.0842 7.6805 1.5055 17 7 7.5260 6.3522 1.2064 18 6 6.5913 5.7793 2.0268 19 1 6.5502 4.7052 2.1312 20 6 5.6967 6.5792 2.7245 21 7 5.6024 7.8615 2.4429 22 14 4.6265 5.8358 4.0630 23 1 4.9213 4.3854 4.1839 24 1 4.9116 6.5088 5.3556 25 1 3.1953 6.0220 3.7130 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3879 2.1185 -0.0004 32 1 3.4819 3.5626 0.8895 33 1 3.4828 3.5616 -0.8905 34 1 5.5416 5.0555 -0.0003 35 1 7.8551 3.7015 0.8895 36 1 7.8547 3.7018 -0.8904 37 1 9.8949 5.0363 0.8258 38 1 9.9070 5.2781 -0.9386 39 1 10.0421 8.5862 1.5252 40 1 9.9737 6.9672 2.2639 41 1 7.7300 8.4019 0.7691 42 1 7.7756 7.9922 2.5033 43 1 4.9770 8.4203 2.9302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754965162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:57 Heat of formation + Delta-G solvation = -88.648328 kcal Electronic energy + Delta-G solvation = -25373.294577 eV Core-core repulsion = 21647.675184 eV Total energy + Delta-G solvation = -3725.619393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95739 -38.82270 -37.99837 -35.40388 -35.01161 -33.50747 -31.87516 -31.18975 -30.45077 -29.29740 -27.19879 -25.31926 -23.47263 -23.14350 -21.78200 -20.77579 -19.80226 -19.48677 -17.14430 -16.98712 -16.23531 -16.02612 -15.69984 -15.56616 -15.40997 -14.80093 -14.64807 -14.55060 -14.10718 -13.81524 -13.42994 -13.35895 -13.12647 -12.84668 -12.69602 -12.41919 -12.15933 -12.01610 -11.69301 -11.55347 -11.40267 -11.07115 -10.93120 -10.73269 -10.40934 -10.26420 -10.06588 -9.83011 -9.66542 -9.12925 -9.03899 -8.85752 -8.69309 -8.19543 -6.75258 -5.93623 -3.43221 2.83043 3.06395 3.20985 3.29121 3.32874 3.36826 3.95171 4.31019 4.53467 4.71305 4.88638 4.89445 5.12063 5.13915 5.23301 5.30972 5.41891 5.55950 5.62186 5.63025 5.73274 5.74121 5.84549 5.88512 6.03075 6.12613 6.16178 6.26319 6.32730 6.44891 6.52622 6.77225 7.06292 7.17957 7.47060 7.51841 7.68957 7.86363 8.24688 8.28761 8.40663 8.94281 9.03294 9.63356 10.22859 11.12785 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004416 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.351816 B = 6338.890582 C = 7627.160958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.741 5.741 4 C 0.513 3.487 5 O -0.493 6.493 6 C -0.166 4.166 7 C 0.508 3.492 8 O -0.521 6.521 9 N -0.699 5.699 10 C 0.138 3.862 11 C 0.126 3.874 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.075 0.925 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.413 0.587 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.092 0.908 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -5.797 -5.262 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.397 5.397 4 C 0.297 3.703 5 O -0.365 6.365 6 C -0.209 4.209 7 C 0.292 3.708 8 O -0.396 6.396 9 N -0.352 5.352 10 C 0.014 3.986 11 C 0.018 3.982 12 H 0.059 0.941 13 C -0.024 4.024 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.381 4.381 19 H 0.093 0.907 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.215 1.215 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.110 0.890 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.778 -7.043 -5.312 10.545 hybrid contribution -1.484 0.572 1.102 1.935 sum -7.262 -6.471 -4.210 10.599 Atomic orbital electron populations 1.22002 0.94643 1.03024 1.02487 1.21226 0.93918 0.83345 1.02297 1.46080 1.07131 1.08646 1.77852 1.20151 0.82044 0.91140 0.76926 1.90841 1.54385 1.45562 1.45690 1.21586 0.96466 0.96279 1.06601 1.19760 0.88573 0.84382 0.78131 1.90791 1.69361 1.30845 1.48650 1.45957 1.07194 1.08582 1.73464 1.21118 0.80241 0.96350 1.00904 1.21433 0.93144 0.91854 0.91723 0.94098 1.22870 0.94822 0.84137 1.00522 1.87798 1.75912 1.28476 1.38942 1.23353 0.99008 0.96862 0.85111 1.21413 0.87581 0.86910 1.02247 1.44110 1.46899 1.17768 1.22972 1.19324 1.07350 0.92031 1.19419 0.90717 1.25140 0.97533 0.96038 1.00422 1.69989 1.38031 1.04691 1.41738 0.86363 0.80191 0.78991 0.82249 1.20076 1.21419 1.21486 0.92019 0.90981 0.91979 0.91707 0.91699 0.76784 0.86093 0.86472 0.74913 0.91613 0.92413 0.93484 0.89885 0.90254 0.94129 0.95269 0.88987 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.03 37.16 0.37 -0.71 16 2 C 0.12 1.17 6.39 -4.04 -0.03 1.14 16 3 N -0.74 -8.24 5.56 -60.29 -0.33 -8.57 16 4 C 0.51 7.98 7.82 -10.98 -0.09 7.89 16 5 O -0.49 -10.18 14.18 -18.96 -0.27 -10.45 16 6 C -0.17 -2.36 6.19 -29.04 -0.18 -2.54 16 7 C 0.51 9.57 7.82 -10.99 -0.09 9.48 16 8 O -0.52 -11.96 14.18 -18.95 -0.27 -12.23 16 9 N -0.70 -12.90 3.77 -60.30 -0.23 -13.13 16 10 C 0.14 2.59 4.45 -4.04 -0.02 2.57 16 11 C 0.13 2.43 3.21 -67.42 -0.22 2.22 16 12 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 O -0.39 -7.63 10.74 -35.23 -0.38 -8.01 16 15 C 0.03 0.66 6.99 37.31 0.26 0.92 16 16 C 0.14 3.22 5.38 -3.53 -0.02 3.21 16 17 N -0.59 -13.41 3.03 -164.30 -0.50 -13.91 16 18 C -0.25 -6.09 7.06 -15.06 -0.11 -6.20 16 19 H 0.08 1.87 5.81 -52.49 -0.30 1.56 16 20 C 0.01 0.20 5.06 -17.43 -0.09 0.11 16 21 N -0.90 -23.56 11.13 55.49 0.62 -22.94 16 22 Si 0.89 20.07 29.57 -169.99 -5.03 15.05 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.40 3.16 8.47 -40.82 -0.35 2.81 16 32 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.41 7.71 7.32 -40.82 -0.30 7.41 16 35 H 0.07 1.36 7.57 -51.93 -0.39 0.96 16 36 H 0.06 1.00 8.14 -51.94 -0.42 0.57 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 43 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -32.89 347.94 -7.82 -40.72 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.72 Total: 8.94 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 0.04 Total: 19.31 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.44 Total: -58.56 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.92 Total: -30.69 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.89 -7.82 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754965162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.932 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds