Wall clock time and date at job start Tue Mar 31 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.34776 * 119.99812 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00125 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.50695 * 109.47083 * 180.02562 * 6 4 3 8 8 O 1.21276 * 120.00174 * 359.72458 * 7 6 4 9 9 N 1.34779 * 120.00003 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00014 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47128 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.67231 * 300.08880 * 11 10 9 13 13 C 1.53296 * 109.68261 * 179.53307 * 11 10 9 14 14 O 1.42954 * 109.22102 * 187.97281 * 13 11 10 15 15 C 1.42965 * 114.17029 * 62.58184 * 14 13 11 16 16 C 1.53301 * 109.22100 * 297.41869 * 15 14 13 17 17 N 1.47151 * 108.38364 * 52.29874 * 16 15 14 18 18 C 1.36936 * 120.98192 * 129.48844 * 17 16 15 19 19 H 1.08001 * 119.99918 * 211.18368 * 18 17 16 20 20 C 1.38808 * 119.99818 * 31.17883 * 18 17 16 21 21 N 1.31623 * 120.00281 * 10.72886 * 20 18 17 22 22 Si 1.86807 * 120.00213 * 190.73053 * 20 18 17 23 23 H 1.48502 * 109.46813 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47194 * 119.99898 * 22 20 18 25 25 H 1.48500 * 109.47275 * 240.00343 * 22 20 18 26 26 H 1.09005 * 109.47240 * 59.99783 * 1 2 3 27 27 H 1.09004 * 109.47380 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47503 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47060 * 239.99787 * 2 1 3 30 30 H 1.08999 * 109.46795 * 119.99666 * 2 1 3 31 31 H 0.97007 * 120.00032 * 359.97438 * 3 2 1 32 32 H 1.09006 * 109.46792 * 60.00016 * 6 4 3 33 33 H 1.09000 * 109.46980 * 300.00513 * 6 4 3 34 34 H 0.97001 * 120.00054 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46696 * 299.99192 * 10 9 7 36 36 H 1.08989 * 109.47611 * 59.99562 * 10 9 7 37 37 H 1.08999 * 109.51120 * 307.89614 * 13 11 10 38 38 H 1.09000 * 109.50995 * 68.04560 * 13 11 10 39 39 H 1.08994 * 109.51487 * 177.49340 * 15 14 13 40 40 H 1.09001 * 109.51099 * 57.33656 * 15 14 13 41 41 H 1.09001 * 109.68002 * 292.57475 * 16 15 14 42 42 H 1.08994 * 109.68067 * 172.02391 * 16 15 14 43 43 H 0.96997 * 120.00120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9591 1.9980 0.0056 9 7 6.0266 4.2155 0.0001 10 6 7.4916 4.2154 -0.0003 11 6 8.0016 5.6580 -0.0008 12 1 7.6385 6.1753 -0.8889 13 6 9.5345 5.6637 0.0105 14 8 9.9989 7.0027 0.1972 15 6 9.6131 7.5876 1.4434 16 6 8.0842 7.6805 1.5055 17 7 7.5260 6.3522 1.2064 18 6 6.5913 5.7793 2.0268 19 1 6.5502 4.7052 2.1312 20 6 5.6967 6.5792 2.7245 21 7 5.6024 7.8615 2.4429 22 14 4.6265 5.8358 4.0630 23 1 4.9213 4.3854 4.1839 24 1 4.9116 6.5088 5.3556 25 1 3.1953 6.0220 3.7130 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3879 2.1185 -0.0004 32 1 3.4819 3.5626 0.8895 33 1 3.4828 3.5616 -0.8905 34 1 5.5416 5.0555 -0.0003 35 1 7.8551 3.7015 0.8895 36 1 7.8547 3.7018 -0.8904 37 1 9.8949 5.0363 0.8258 38 1 9.9070 5.2781 -0.9386 39 1 10.0421 8.5862 1.5252 40 1 9.9737 6.9672 2.2639 41 1 7.7300 8.4019 0.7691 42 1 7.7756 7.9922 2.5033 43 1 4.9770 8.4203 2.9302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754965162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:56 Heat of formation + Delta-G solvation = -112.872732 kcal Electronic energy + Delta-G solvation = -25374.345026 eV Core-core repulsion = 21647.675184 eV Total energy + Delta-G solvation = -3726.669842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29537 -40.31038 -39.45888 -36.91410 -36.17276 -35.20822 -33.40931 -32.54921 -31.96270 -30.34754 -28.94352 -26.81462 -25.22124 -24.04390 -23.29601 -21.99956 -21.41351 -20.94742 -18.76339 -18.26816 -17.69420 -17.48395 -17.10082 -16.90428 -16.63094 -16.23977 -16.07672 -16.04194 -15.60033 -15.37477 -14.93639 -14.73668 -14.53073 -14.35360 -14.10909 -13.58731 -13.25731 -13.14681 -12.95772 -12.77527 -12.70482 -12.67963 -12.44751 -12.33210 -12.10135 -11.98595 -11.83946 -11.29413 -11.16236 -10.72626 -10.54827 -10.36963 -10.06505 -9.77668 -8.59505 -7.83821 -5.35274 1.41005 1.49722 1.56681 1.64169 1.82613 1.98023 2.46647 2.66040 3.04707 3.31824 3.46118 3.63828 4.02637 4.07353 4.18446 4.21383 4.24770 4.34943 4.37551 4.47182 4.49227 4.52662 4.62868 4.65640 4.67867 4.77921 4.95767 5.01996 5.06339 5.13563 5.26599 5.32645 5.50775 5.61809 5.68175 5.73608 6.30864 6.40038 6.57513 6.78483 7.13774 7.30346 7.49279 7.78919 8.35754 9.20708 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004416 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.351816 B = 6338.890582 C = 7627.160958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.721 5.721 4 C 0.509 3.491 5 O -0.554 6.554 6 C -0.159 4.159 7 C 0.502 3.498 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.144 3.856 11 C 0.128 3.872 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.397 6.397 15 C 0.045 3.955 16 C 0.150 3.850 17 N -0.606 5.606 18 C -0.242 4.242 19 H 0.066 0.934 20 C -0.029 4.029 21 N -0.925 5.925 22 Si 0.943 3.057 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.276 1.276 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.414 0.586 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.009 0.991 42 H 0.066 0.934 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 -5.683 -5.956 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.376 5.376 4 C 0.294 3.706 5 O -0.430 6.430 6 C -0.201 4.201 7 C 0.288 3.712 8 O -0.445 6.445 9 N -0.348 5.348 10 C 0.019 3.981 11 C 0.022 3.978 12 H 0.059 0.941 13 C -0.022 4.022 14 O -0.316 6.316 15 C -0.033 4.033 16 C 0.024 3.976 17 N -0.332 5.332 18 C -0.372 4.372 19 H 0.084 0.916 20 C -0.226 4.226 21 N -0.571 5.571 22 Si 0.773 3.227 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.202 1.202 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.251 0.749 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.976 -6.900 -6.021 11.512 hybrid contribution -1.118 0.513 1.292 1.784 sum -8.094 -6.386 -4.729 11.343 Atomic orbital electron populations 1.21944 0.91437 1.04204 1.03446 1.21354 0.96425 0.82426 1.01100 1.45948 1.06039 1.09947 1.75673 1.20426 0.82951 0.91008 0.76210 1.90822 1.56160 1.47158 1.48855 1.21620 0.92942 0.96200 1.09355 1.20502 0.90500 0.83458 0.76784 1.90776 1.70761 1.32290 1.50635 1.45969 1.07114 1.08642 1.73101 1.21036 0.80687 0.95753 1.00614 1.21526 0.94377 0.91637 0.90237 0.94116 1.22992 0.93368 0.83571 1.02318 1.87803 1.75743 1.29196 1.38820 1.23236 0.96438 0.98376 0.85263 1.21236 0.89859 0.86440 1.00036 1.44303 1.46890 1.17894 1.24065 1.19312 1.07096 0.91564 1.19236 0.91599 1.25583 0.98740 0.96265 1.01994 1.70104 1.38807 1.05509 1.42674 0.85583 0.79663 0.77568 0.79899 1.20840 1.22580 1.20236 0.90738 0.89761 0.91235 0.92685 0.93320 0.74551 0.84369 0.82290 0.74879 0.93859 0.90698 0.93574 0.86544 0.87733 0.94053 0.97284 0.91581 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.03 71.98 0.72 -0.90 16 2 C 0.11 2.11 6.39 86.38 0.55 2.66 16 3 N -0.72 -14.67 5.56 -463.06 -2.57 -17.24 16 4 C 0.51 15.35 7.82 87.66 0.69 16.04 16 5 O -0.55 -23.27 14.18 20.42 0.29 -22.98 16 6 C -0.16 -4.21 6.19 29.10 0.18 -4.03 16 7 C 0.50 18.64 7.82 87.66 0.69 19.32 16 8 O -0.57 -26.37 14.18 20.43 0.29 -26.08 16 9 N -0.70 -25.20 3.77 -463.07 -1.75 -26.94 16 10 C 0.14 5.29 4.45 86.38 0.38 5.67 16 11 C 0.13 4.84 3.21 44.97 0.14 4.98 16 12 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 13 C 0.06 1.88 6.29 72.08 0.45 2.33 16 14 O -0.40 -14.59 10.74 -148.98 -1.60 -16.19 16 15 C 0.04 1.65 6.99 72.08 0.50 2.15 16 16 C 0.15 6.70 5.38 86.36 0.46 7.17 16 17 N -0.61 -27.24 3.03 -673.71 -2.04 -29.28 16 18 C -0.24 -11.67 7.06 84.03 0.59 -11.08 16 19 H 0.07 3.30 5.81 -2.91 -0.02 3.28 16 20 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 21 N -0.93 -48.55 11.13 21.65 0.24 -48.31 16 22 Si 0.94 41.06 29.57 68.60 2.03 43.09 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.42 5.31 8.47 -92.70 -0.79 4.53 16 32 H 0.14 3.23 8.14 -2.38 -0.02 3.21 16 33 H 0.16 2.82 8.14 -2.39 -0.02 2.81 16 34 H 0.41 14.99 7.32 -92.71 -0.68 14.31 16 35 H 0.04 1.79 7.57 -2.39 -0.02 1.77 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.07 3.30 6.33 -2.39 -0.02 3.28 16 43 H 0.25 12.90 8.31 -92.71 -0.77 12.12 16 Total: -1.00 -72.76 347.94 0.25 -72.51 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.44 Total: 28.12 kcal Atomic # 6 Polarization: 37.51 SS G_CDS: 5.80 Total: 43.31 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -6.12 Total: -121.77 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -1.02 Total: -65.26 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.76 0.25 -72.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754965162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.362 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds