Wall clock time and date at job start Tue Mar 31 2020 04:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48502 * 109.46961 * 239.99598 * 3 2 1 5 5 H 1.48501 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47733 * 119.99632 * 3 2 1 7 7 C 1.38808 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00344 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00241 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.47101 * 34.99882 * 10 9 7 12 12 C 1.53004 * 109.47127 * 275.00358 * 10 9 7 13 13 O 1.42903 * 109.46899 * 294.99876 * 12 10 9 14 14 C 1.52996 * 109.47576 * 155.00188 * 10 9 7 15 15 N 1.46500 * 109.46982 * 305.00085 * 14 10 9 16 16 C 1.34780 * 120.00452 * 179.97438 * 15 14 10 17 17 O 1.21283 * 119.99537 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00085 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47023 * 180.02562 * 18 16 15 20 20 N 1.46897 * 109.47166 * 180.02562 * 19 18 16 21 21 C 1.46854 * 110.99665 * 170.00131 * 20 19 18 22 22 C 1.53037 * 109.51886 * 185.84309 * 21 20 19 23 23 C 1.53126 * 109.27801 * 300.81620 * 22 21 20 24 24 C 1.53124 * 109.15878 * 57.65645 * 23 22 21 25 25 C 1.46844 * 111.00090 * 294.20807 * 20 19 18 26 26 H 0.96999 * 120.00341 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99650 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.47316 * 54.99569 * 12 10 9 29 29 H 1.09003 * 109.47239 * 175.00260 * 12 10 9 30 30 H 0.96700 * 114.00104 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47813 * 185.00131 * 14 10 9 32 32 H 1.08994 * 109.47277 * 64.99397 * 14 10 9 33 33 H 0.97011 * 119.99882 * 359.97438 * 15 14 10 34 34 H 1.08995 * 109.47181 * 60.00369 * 18 16 15 35 35 H 1.09003 * 109.47281 * 299.99639 * 18 16 15 36 36 H 1.09004 * 109.46918 * 59.99817 * 19 18 16 37 37 H 1.09003 * 109.46728 * 300.00390 * 19 18 16 38 38 H 1.08994 * 109.46310 * 65.82535 * 21 20 19 39 39 H 1.09004 * 109.45830 * 305.85222 * 21 20 19 40 40 H 1.09000 * 109.50480 * 180.88135 * 22 21 20 41 41 H 1.08992 * 109.50737 * 60.75564 * 22 21 20 42 42 H 1.08998 * 109.52297 * 177.56592 * 23 22 21 43 43 H 1.08999 * 109.51925 * 297.75795 * 23 22 21 44 44 H 1.08999 * 109.50059 * 62.28737 * 24 23 22 45 45 H 1.08993 * 109.49981 * 182.40384 * 24 23 22 46 46 H 1.09002 * 109.46133 * 294.17882 * 25 20 19 47 47 H 1.09002 * 109.46211 * 54.14407 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 2.4221 -4.0355 -1.4365 13 8 1.2279 -4.2885 -2.1794 14 6 1.1810 -4.7522 0.6101 15 7 0.7344 -4.3356 1.9417 16 6 -0.0554 -5.1474 2.6723 17 8 -0.3960 -6.2230 2.2274 18 6 -0.5143 -4.7190 4.0422 19 6 -1.3916 -5.8144 4.6519 20 7 -1.8395 -5.3966 5.9870 21 6 -2.8684 -6.3070 6.5057 22 6 -3.4138 -5.7622 7.8277 23 6 -2.2662 -5.6331 8.8332 24 6 -1.1862 -4.7185 8.2484 25 6 -0.7054 -5.2935 6.9142 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.9717 -3.2163 -1.9001 29 1 3.0426 -4.9316 -1.4300 30 1 1.3830 -4.5352 -3.1014 31 1 1.7559 -5.6746 0.6918 32 1 0.3135 -4.9201 -0.0280 33 1 1.0071 -3.4753 2.2977 34 1 -1.0888 -3.7963 3.9609 35 1 0.3534 -4.5519 4.6804 36 1 -0.8168 -6.7369 4.7332 37 1 -2.2593 -5.9820 4.0138 38 1 -2.4318 -7.2919 6.6713 39 1 -3.6805 -6.3867 5.7830 40 1 -4.1663 -6.4461 8.2204 41 1 -3.8628 -4.7833 7.6604 42 1 -2.6424 -5.2048 9.7623 43 1 -1.8421 -6.6176 9.0303 44 1 -1.6003 -3.7231 8.0877 45 1 -0.3474 -4.6567 8.9416 46 1 -0.2790 -6.2832 7.0778 47 1 0.0534 -4.6371 6.4882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755648106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:20 Heat of formation + Delta-G solvation = -86.889728 kcal Electronic energy + Delta-G solvation = -24677.447774 eV Core-core repulsion = 21087.737735 eV Total energy + Delta-G solvation = -3589.710039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.62919 -38.79958 -37.10304 -34.90325 -34.23963 -33.42764 -31.47547 -31.07245 -30.17395 -28.24830 -25.72847 -24.40758 -23.59340 -23.21522 -21.80835 -20.09846 -19.86333 -19.60543 -17.60471 -16.97360 -16.58807 -15.82985 -15.67958 -15.58840 -14.92139 -14.73833 -14.58741 -14.23118 -13.96182 -13.75701 -13.52899 -13.34943 -13.27791 -12.97313 -12.69970 -12.52580 -12.28364 -11.92096 -11.72904 -11.40532 -11.37550 -11.14844 -10.87755 -10.85142 -10.83613 -10.56854 -10.54036 -10.41266 -10.12780 -9.78768 -9.50010 -9.33699 -8.97473 -8.52910 -8.41287 -7.03722 -5.81066 -3.11682 3.03585 3.39205 3.44132 3.45854 3.46571 3.99740 4.52746 4.61500 4.64327 4.73793 4.93411 4.94624 5.09807 5.14030 5.22444 5.30774 5.34084 5.42237 5.44508 5.51320 5.53573 5.58061 5.61445 5.70737 5.75257 5.77413 5.90771 5.93417 5.97691 6.01447 6.03047 6.04446 6.06845 6.19533 6.39234 6.52066 6.76349 6.97028 6.98226 7.00302 7.61674 8.01454 8.21188 8.35813 8.65927 9.47939 10.03355 10.39982 11.40339 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003156 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.645735 B = 8869.820794 C =10264.024683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.065 0.935 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.713 5.713 16 C 0.512 3.488 17 O -0.560 6.560 18 C -0.138 4.138 19 C 0.075 3.925 20 N -0.540 5.540 21 C 0.057 3.943 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.118 4.118 25 C 0.050 3.950 26 H 0.257 0.743 27 H 0.389 0.611 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.363 0.637 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -11.972 13.117 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.364 5.364 16 C 0.297 3.703 17 O -0.439 6.439 18 C -0.178 4.178 19 C -0.053 4.053 20 N -0.264 5.264 21 C -0.071 4.071 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.078 4.078 26 H 0.066 0.934 27 H 0.224 0.776 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.208 0.792 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.246 0.754 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.488 -11.954 13.349 17.981 hybrid contribution 1.087 0.525 -0.530 1.319 sum -0.400 -11.429 12.819 17.179 Atomic orbital electron populations 1.69666 1.05075 1.25868 1.56614 1.24746 0.95452 0.97637 1.02568 0.86299 0.78532 0.83667 0.77778 1.21379 1.21694 1.21232 1.19164 0.90856 0.84079 1.43958 0.91293 1.42362 1.06061 0.99015 1.88012 1.20586 0.95029 0.87082 0.91860 0.91750 1.23040 0.86501 0.97212 0.95476 1.86574 1.32160 1.91885 1.25696 1.21516 0.99427 0.96706 0.82920 1.46010 1.50631 1.21833 1.17929 1.20521 0.78242 0.84427 0.87077 1.90656 1.57248 1.23027 1.72968 1.21619 1.01161 1.01386 0.93664 1.21757 0.99115 0.95489 0.88961 1.61880 1.11914 1.50330 1.02316 1.22059 0.94926 0.93406 0.96742 1.21591 0.97513 1.01991 0.94393 1.21584 0.96407 0.99668 0.98265 1.21590 0.98409 0.99964 0.95571 1.22170 0.93008 0.99623 0.92998 0.93352 0.77648 0.93349 0.95583 0.79187 0.92335 0.90695 0.75414 0.87778 0.89248 0.94198 0.89921 0.95070 0.90634 0.91724 0.90957 0.91943 0.92485 0.90906 0.91689 0.95085 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 13.06 55.49 0.72 -26.46 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 9 N -0.71 -16.96 4.51 -53.43 -0.24 -17.20 16 10 C 0.17 3.15 2.84 -67.93 -0.19 2.96 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.03 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.11 12.64 -35.23 -0.45 -10.55 16 14 C 0.12 2.14 5.12 -4.04 -0.02 2.12 16 15 N -0.71 -12.20 5.39 -60.30 -0.32 -12.52 16 16 C 0.51 8.58 7.83 -10.99 -0.09 8.50 16 17 O -0.56 -11.07 15.98 5.55 0.09 -10.98 16 18 C -0.14 -1.83 5.63 -27.88 -0.16 -1.99 16 19 C 0.07 0.96 4.25 -3.82 -0.02 0.94 16 20 N -0.54 -6.13 4.66 -234.66 -1.09 -7.23 16 21 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 22 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 23 C -0.12 -0.97 6.00 -26.60 -0.16 -1.13 16 24 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 25 C 0.05 0.50 5.29 -3.84 -0.02 0.48 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 10.31 7.80 -40.82 -0.32 9.99 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.36 4.73 9.12 45.56 0.42 5.15 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.53 7.39 -51.93 -0.38 1.15 16 33 H 0.41 7.00 8.14 -40.82 -0.33 6.67 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.02 6.43 -51.93 -0.33 0.69 16 36 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.08 1.15 7.94 -51.93 -0.41 0.73 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.78 6.21 -51.93 -0.32 0.46 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -31.62 375.05 -9.21 -40.84 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -7.56 Total: 17.45 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.99 Total: 4.41 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.93 Total: -63.41 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.36 Total: -21.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.62 -9.21 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755648106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.051 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds