Wall clock time and date at job start Tue Mar 31 2020 03:53:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46505 * 109.46891 * 7.12799 * 3 2 1
5 5 C 1.36938 * 119.99677 * 277.12254 * 4 3 2
6 6 H 1.08004 * 119.99844 * 146.11684 * 5 4 3
7 7 C 1.38806 * 120.00460 * 326.11889 * 5 4 3
8 8 N 1.31616 * 119.99921 * 335.68248 * 7 5 4
9 9 Si 1.86798 * 120.00222 * 155.67916 * 7 5 4
10 10 H 1.48499 * 109.47366 * 84.99715 * 9 7 5
11 11 H 1.48498 * 109.47399 * 204.99768 * 9 7 5
12 12 H 1.48503 * 109.47079 * 324.99435 * 9 7 5
13 13 S 1.65596 * 120.00004 * 97.12969 * 4 3 2
14 14 O 1.42101 * 106.40225 * 203.53399 * 13 4 3
15 15 O 1.42095 * 106.40518 * 336.45566 * 13 4 3
16 16 C 1.76197 * 107.22060 * 89.99899 * 13 4 3
17 17 C 1.35166 * 125.61166 * 89.99940 * 16 13 4
18 18 C 1.40311 * 107.13064 * 180.02562 * 17 16 13
19 19 C 1.36643 * 106.69847 * 359.97438 * 18 17 16
20 20 C 1.46474 * 125.99318 * 180.02562 * 19 18 17
21 21 O 1.21622 * 120.00508 * 0.02562 * 20 19 18
22 22 O 1.34899 * 119.99632 * 180.02562 * 20 19 18
23 23 O 1.33920 * 125.60824 * 269.69380 * 16 13 4
24 24 H 1.09001 * 109.46998 * 127.12361 * 3 2 1
25 25 H 1.09001 * 109.47181 * 247.12641 * 3 2 1
26 26 H 0.97008 * 120.00284 * 179.97438 * 8 7 5
27 27 H 1.08001 * 126.44080 * 359.97438 * 17 16 13
28 28 H 1.07999 * 126.65466 * 180.02562 * 18 17 16
29 29 H 0.96696 * 116.99978 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0969 -1.3697 -0.1714
5 6 3.1868 -2.2048 0.9101
6 1 3.0042 -3.2628 0.7921
7 6 3.5125 -1.6918 2.1581
8 7 4.1843 -0.5638 2.2510
9 14 2.9973 -2.6021 3.7057
10 1 4.0070 -3.6423 4.0276
11 1 2.8980 -1.6425 4.8347
12 1 1.6770 -3.2452 3.4854
13 16 3.5409 -1.9087 -1.6729
14 8 3.4274 -3.3248 -1.6407
15 8 2.8511 -1.0949 -2.6116
16 6 5.2550 -1.5514 -1.8696
17 6 6.2740 -2.3721 -1.5306
18 6 7.4661 -1.7052 -1.8513
19 6 7.1099 -0.4954 -2.3773
20 6 8.0293 0.5398 -2.8551
21 8 9.2306 0.3577 -2.8025
22 8 7.5435 1.6954 -3.3537
23 8 5.7624 -0.4242 -2.3848
24 1 2.9710 0.6211 -0.8194
25 1 2.9711 0.4003 0.9469
26 1 4.4116 -0.2050 3.1231
27 1 6.1871 -3.3561 -1.0940
28 1 8.4705 -2.0764 -1.7106
29 1 8.1890 2.3483 -3.6570
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000034972469.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:02
Heat of formation + Delta-G solvation = -104.581440 kcal
Electronic energy + Delta-G solvation = -22154.566424 eV
Core-core repulsion = 18365.791046 eV
Total energy + Delta-G solvation = -3788.775379 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 300.034 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.31869 -39.91287 -36.98432 -36.25220 -36.11491 -35.10655 -34.70838 -32.84474
-32.19612 -30.07556 -27.80732 -24.66280 -24.43963 -21.82261 -20.72724 -19.02619
-18.59844 -18.28707 -18.00609 -17.18141 -16.60692 -16.18982 -16.07821 -15.39481
-14.99750 -14.66173 -13.99841 -13.79993 -13.35516 -13.24910 -13.00678 -12.74610
-12.65423 -12.44368 -11.79314 -11.77941 -11.72311 -11.35732 -11.14279 -11.09954
-10.98508 -10.93610 -10.77106 -10.59612 -10.47448 -9.84613 -9.78472 -8.79695
-8.52160 -7.14960 -4.64655 0.77431 1.20317 2.27520 2.57783 2.84739
2.95377 2.96440 3.03297 3.26728 3.48477 3.50546 3.69086 4.17498
4.24099 4.63590 4.93035 5.06778 5.17712 5.44284 5.61378 5.75362
5.78577 6.00473 6.23567 6.36699 6.46572 6.59804 6.85573 7.00751
7.74248 7.75573 8.07723 8.21698 8.55594 9.79958
Molecular weight = 300.03amu
Principal moments of inertia in cm(-1)
A = 0.016102 B = 0.005920 C = 0.005350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1738.479700 B = 4728.966352 C = 5232.749267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.454 5.454
2 C 0.221 3.779
3 C 0.208 3.792
4 N -0.780 5.780
5 C -0.218 4.218
6 H 0.128 0.872
7 C 0.036 3.964
8 N -0.799 5.799
9 Si 0.933 3.067
10 H -0.264 1.264
11 H -0.273 1.273
12 H -0.258 1.258
13 S 2.491 3.509
14 O -0.960 6.960
15 O -0.982 6.982
16 C -0.474 4.474
17 C -0.141 4.141
18 C -0.116 4.116
19 C -0.069 4.069
20 C 0.576 3.424
21 O -0.501 6.501
22 O -0.500 6.500
23 O -0.100 6.100
24 H 0.111 0.889
25 H 0.148 0.852
26 H 0.289 0.711
27 H 0.169 0.831
28 H 0.164 0.836
29 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.546 2.448 -0.470 7.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.133 5.133
2 C -0.099 4.099
3 C 0.078 3.922
4 N -0.601 5.601
5 C -0.373 4.373
6 H 0.145 0.855
7 C -0.181 4.181
8 N -0.436 5.436
9 Si 0.756 3.244
10 H -0.189 1.189
11 H -0.198 1.198
12 H -0.182 1.182
13 S 2.588 3.412
14 O -0.949 6.949
15 O -0.971 6.971
16 C -0.597 4.597
17 C -0.161 4.161
18 C -0.137 4.137
19 C -0.122 4.122
20 C 0.421 3.579
21 O -0.392 6.392
22 O -0.312 6.312
23 O 0.008 5.992
24 H 0.129 0.871
25 H 0.165 0.835
26 H 0.100 0.900
27 H 0.187 0.813
28 H 0.181 0.819
29 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges 4.492 2.179 -1.413 5.189
hybrid contribution 1.878 0.099 0.670 1.996
sum 6.369 2.278 -0.744 6.805
Atomic orbital electron populations
1.81015 1.13354 1.08138 1.10827 1.29925 0.95757 0.92624 0.91548
1.18942 0.80133 0.85123 1.08036 1.54266 1.61813 1.18919 1.25095
1.20323 1.38279 0.94553 0.84110 0.85518 1.26072 0.93622 0.96933
1.01505 1.69876 1.27171 1.18552 1.28039 0.85789 0.80492 0.79529
0.78595 1.18892 1.19802 1.18198 1.14846 0.73737 0.75297 0.77282
1.93399 1.84640 1.29870 1.87021 1.93377 1.71352 1.68899 1.63471
1.38890 1.26910 0.88892 1.04972 1.21779 0.90309 1.01764 1.02279
1.22063 1.00635 0.92196 0.98762 1.21029 0.83115 0.96626 1.11383
1.18889 0.85262 0.79985 0.73767 1.90971 1.14938 1.79505 1.53743
1.84722 1.44947 1.27408 1.74086 1.84304 1.17775 1.36005 1.61156
0.87118 0.83538 0.90005 0.81326 0.81870 0.72524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -9.70 18.54 42.15 0.78 -8.92 15
2 C 0.22 4.43 15.70 -20.76 -0.33 4.11 15
3 C 0.21 3.90 5.47 -6.83 -0.04 3.86 15
4 N -0.78 -16.23 2.82 -62.77 -0.18 -16.41 15
5 C -0.22 -4.53 9.08 -15.06 -0.14 -4.67 15
6 H 0.13 2.61 7.42 -52.48 -0.39 2.23 15
7 C 0.04 0.71 4.98 -17.43 -0.09 0.62 15
8 N -0.80 -15.80 11.32 55.49 0.63 -15.17 15
9 Si 0.93 15.76 29.62 -169.99 -5.03 10.73 15
10 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15
11 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15
12 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15
13 S 2.49 54.23 5.75 -107.50 -0.62 53.61 15
14 O -0.96 -22.47 16.72 -57.17 -0.96 -23.43 15
15 O -0.98 -23.18 16.95 -57.27 -0.97 -24.15 15
16 C -0.47 -9.62 7.35 29.64 0.22 -9.41 15
17 C -0.14 -2.58 10.58 -39.90 -0.42 -3.00 15
18 C -0.12 -1.95 10.62 -39.38 -0.42 -2.37 15
19 C -0.07 -1.23 7.18 -36.84 -0.26 -1.49 15
20 C 0.58 8.90 8.30 34.05 0.28 9.18 15
21 O -0.50 -8.20 17.65 -19.36 -0.34 -8.54 15
22 O -0.50 -6.20 13.44 -42.48 -0.57 -6.77 15
23 O -0.10 -2.01 10.67 4.66 0.05 -1.96 15
24 H 0.11 1.87 7.53 -51.93 -0.39 1.48 15
25 H 0.15 2.68 5.37 -51.93 -0.28 2.40 15
26 H 0.29 5.27 8.31 -40.82 -0.34 4.93 15
27 H 0.17 2.77 8.06 -52.49 -0.42 2.34 15
28 H 0.16 2.25 8.06 -52.49 -0.42 1.83 15
29 H 0.42 2.63 9.11 45.56 0.42 3.04 15
LS Contribution 297.93 15.07 4.49 4.49
Total: -1.00 -29.19 297.93 -4.54 -33.72
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -0.62 Total: 5.97 kcal
Atomic # 6 Polarization: -1.97 SS G_CDS: -1.19 Total: -3.16 kcal
Atomic # 7 Polarization: -41.73 SS G_CDS: 1.23 Total: -40.50 kcal
Atomic # 8 Polarization: -62.06 SS G_CDS: -2.79 Total: -64.85 kcal
Atomic # 14 Polarization: 15.76 SS G_CDS: -5.03 Total: 10.73 kcal
Atomic # 16 Polarization: 54.23 SS G_CDS: -0.62 Total: 53.61 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -29.19 -4.54 -33.72 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034972469.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.860 kcal
(2) G-P(sol) polarization free energy of solvation -29.185 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.045 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds