Wall clock time and date at job start Tue Mar 31 2020 03:53:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46505 * 109.46891 * 7.12799 * 3 2 1
5 5 C 1.36938 * 119.99677 * 277.12254 * 4 3 2
6 6 H 1.08004 * 119.99844 * 146.11684 * 5 4 3
7 7 C 1.38806 * 120.00460 * 326.11889 * 5 4 3
8 8 N 1.31616 * 119.99921 * 335.68248 * 7 5 4
9 9 Si 1.86798 * 120.00222 * 155.67916 * 7 5 4
10 10 H 1.48499 * 109.47366 * 84.99715 * 9 7 5
11 11 H 1.48498 * 109.47399 * 204.99768 * 9 7 5
12 12 H 1.48503 * 109.47079 * 324.99435 * 9 7 5
13 13 S 1.65596 * 120.00004 * 97.12969 * 4 3 2
14 14 O 1.42101 * 106.40225 * 203.53399 * 13 4 3
15 15 O 1.42095 * 106.40518 * 336.45566 * 13 4 3
16 16 C 1.76197 * 107.22060 * 89.99899 * 13 4 3
17 17 C 1.35166 * 125.61166 * 89.99940 * 16 13 4
18 18 C 1.40311 * 107.13064 * 180.02562 * 17 16 13
19 19 C 1.36643 * 106.69847 * 359.97438 * 18 17 16
20 20 C 1.46474 * 125.99318 * 180.02562 * 19 18 17
21 21 O 1.21622 * 120.00508 * 0.02562 * 20 19 18
22 22 O 1.34899 * 119.99632 * 180.02562 * 20 19 18
23 23 O 1.33920 * 125.60824 * 269.69380 * 16 13 4
24 24 H 1.09001 * 109.46998 * 127.12361 * 3 2 1
25 25 H 1.09001 * 109.47181 * 247.12641 * 3 2 1
26 26 H 0.97008 * 120.00284 * 179.97438 * 8 7 5
27 27 H 1.08001 * 126.44080 * 359.97438 * 17 16 13
28 28 H 1.07999 * 126.65466 * 180.02562 * 18 17 16
29 29 H 0.96696 * 116.99978 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0969 -1.3697 -0.1714
5 6 3.1868 -2.2048 0.9101
6 1 3.0042 -3.2628 0.7921
7 6 3.5125 -1.6918 2.1581
8 7 4.1843 -0.5638 2.2510
9 14 2.9973 -2.6021 3.7057
10 1 4.0070 -3.6423 4.0276
11 1 2.8980 -1.6425 4.8347
12 1 1.6770 -3.2452 3.4854
13 16 3.5409 -1.9087 -1.6729
14 8 3.4274 -3.3248 -1.6407
15 8 2.8511 -1.0949 -2.6116
16 6 5.2550 -1.5514 -1.8696
17 6 6.2740 -2.3721 -1.5306
18 6 7.4661 -1.7052 -1.8513
19 6 7.1099 -0.4954 -2.3773
20 6 8.0293 0.5398 -2.8551
21 8 9.2306 0.3577 -2.8025
22 8 7.5435 1.6954 -3.3537
23 8 5.7624 -0.4242 -2.3848
24 1 2.9710 0.6211 -0.8194
25 1 2.9711 0.4003 0.9469
26 1 4.4116 -0.2050 3.1231
27 1 6.1871 -3.3561 -1.0940
28 1 8.4705 -2.0764 -1.7106
29 1 8.1890 2.3483 -3.6570
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000034972469.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:01
Heat of formation + Delta-G solvation = -126.048060 kcal
Electronic energy + Delta-G solvation = -22155.497287 eV
Core-core repulsion = 18365.791046 eV
Total energy + Delta-G solvation = -3789.706241 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 300.034 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-43.71056 -41.07883 -38.58776 -37.80978 -37.34574 -36.75067 -36.40181 -34.23617
-33.79846 -31.42962 -29.38945 -26.13356 -25.83274 -23.21322 -22.01342 -20.58154
-20.03369 -19.82322 -19.28258 -18.57245 -18.09353 -17.65847 -17.56805 -16.95242
-16.29319 -16.20803 -15.53164 -15.02428 -14.94386 -14.67629 -14.31135 -14.25611
-14.10956 -13.99199 -13.41539 -13.34193 -12.94086 -12.80971 -12.75394 -12.71663
-12.52180 -12.38346 -12.20049 -12.09568 -11.96242 -11.31883 -11.21972 -10.24193
-10.06368 -8.71507 -6.26396 -0.60228 -0.34320 0.89788 1.35023 1.47948
1.60200 1.68376 1.70383 1.71488 1.87263 2.17365 2.29772 2.63524
2.68308 3.04470 3.34849 3.75773 3.79930 4.06752 4.23374 4.31365
4.43735 4.66583 4.84486 5.01138 5.11600 5.24783 5.29929 5.65243
6.15990 6.44176 6.60343 6.76301 6.94744 8.24506
Molecular weight = 300.03amu
Principal moments of inertia in cm(-1)
A = 0.016102 B = 0.005920 C = 0.005350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1738.479700 B = 4728.966352 C = 5232.749267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.478 5.478
2 C 0.232 3.768
3 C 0.208 3.792
4 N -0.781 5.781
5 C -0.218 4.218
6 H 0.125 0.875
7 C 0.016 3.984
8 N -0.800 5.800
9 Si 0.987 3.013
10 H -0.257 1.257
11 H -0.264 1.264
12 H -0.266 1.266
13 S 2.472 3.528
14 O -0.990 6.990
15 O -1.013 7.013
16 C -0.500 4.500
17 C -0.143 4.143
18 C -0.113 4.113
19 C -0.082 4.082
20 C 0.586 3.414
21 O -0.511 6.511
22 O -0.496 6.496
23 O -0.117 6.117
24 H 0.128 0.872
25 H 0.157 0.843
26 H 0.301 0.699
27 H 0.182 0.818
28 H 0.193 0.807
29 H 0.442 0.558
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.734 2.890 1.115 8.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.158 5.158
2 C -0.087 4.087
3 C 0.079 3.921
4 N -0.600 5.600
5 C -0.377 4.377
6 H 0.143 0.857
7 C -0.202 4.202
8 N -0.437 5.437
9 Si 0.807 3.193
10 H -0.182 1.182
11 H -0.188 1.188
12 H -0.191 1.191
13 S 2.574 3.426
14 O -0.979 6.979
15 O -1.002 7.002
16 C -0.624 4.624
17 C -0.163 4.163
18 C -0.133 4.133
19 C -0.135 4.135
20 C 0.430 3.570
21 O -0.402 6.402
22 O -0.311 6.311
23 O -0.010 6.010
24 H 0.146 0.854
25 H 0.173 0.827
26 H 0.113 0.887
27 H 0.199 0.801
28 H 0.211 0.789
29 H 0.306 0.694
Dipole moment (debyes) X Y Z Total
from point charges 5.682 2.667 0.102 6.278
hybrid contribution 1.588 0.036 0.303 1.617
sum 7.270 2.704 0.404 7.767
Atomic orbital electron populations
1.81015 1.14079 1.08897 1.11772 1.30143 0.95917 0.91878 0.90751
1.19156 0.79323 0.84536 1.09101 1.54510 1.61015 1.19534 1.24934
1.20678 1.37553 0.95025 0.84401 0.85732 1.26700 0.93119 0.97406
1.02981 1.69868 1.25931 1.18363 1.29532 0.84995 0.79721 0.78786
0.75770 1.18182 1.18849 1.19074 1.16405 0.73914 0.74565 0.77681
1.93317 1.85403 1.31748 1.87411 1.93292 1.72741 1.69198 1.65009
1.38686 1.27099 0.89807 1.06835 1.22087 0.90527 1.02079 1.01613
1.22417 1.01421 0.91620 0.97795 1.21652 0.82695 0.97906 1.11200
1.18552 0.84496 0.80321 0.73635 1.90970 1.15056 1.79883 1.54327
1.84670 1.46009 1.27017 1.73378 1.84267 1.18899 1.36183 1.61699
0.85435 0.82656 0.88750 0.80099 0.78936 0.69408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 33.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.48 -20.26 18.54 20.00 0.37 -19.89 15
2 C 0.23 9.21 15.70 89.44 1.40 10.61 15
3 C 0.21 7.69 5.47 84.57 0.46 8.16 15
4 N -0.78 -32.36 2.82 -352.50 -0.99 -33.36 15
5 C -0.22 -8.88 9.08 84.03 0.76 -8.11 15
6 H 0.13 5.09 7.42 -2.91 -0.02 5.07 15
7 C 0.02 0.59 4.98 84.86 0.42 1.01 15
8 N -0.80 -29.67 11.32 21.65 0.25 -29.42 15
9 Si 0.99 30.05 29.62 68.60 2.03 32.08 15
10 H -0.26 -7.62 7.11 99.48 0.71 -6.91 15
11 H -0.26 -7.70 7.11 99.48 0.71 -6.99 15
12 H -0.27 -8.52 7.11 99.48 0.71 -7.81 15
13 S 2.47 110.11 5.75 -56.49 -0.33 109.79 15
14 O -0.99 -47.64 16.72 -128.00 -2.14 -49.78 15
15 O -1.01 -49.37 16.95 -127.90 -2.17 -51.53 15
16 C -0.50 -20.53 7.35 67.11 0.49 -20.04 15
17 C -0.14 -5.16 10.58 22.07 0.23 -4.93 15
18 C -0.11 -3.63 10.62 22.40 0.24 -3.39 15
19 C -0.08 -2.84 7.18 24.04 0.17 -2.67 15
20 C 0.59 17.09 8.30 69.97 0.58 17.67 15
21 O -0.51 -15.66 17.65 19.44 0.34 -15.32 15
22 O -0.50 -11.30 13.44 -56.75 -0.76 -12.06 15
23 O -0.12 -4.71 10.67 -4.86 -0.05 -4.76 15
24 H 0.13 4.28 7.53 -2.39 -0.02 4.26 15
25 H 0.16 5.44 5.37 -2.39 -0.01 5.43 15
26 H 0.30 10.05 8.31 -92.70 -0.77 9.28 15
27 H 0.18 5.86 8.06 -2.91 -0.02 5.84 15
28 H 0.19 4.85 8.06 -2.91 -0.02 4.83 15
29 H 0.44 4.42 9.11 -74.06 -0.67 3.75 15
Total: -1.00 -61.11 297.93 1.90 -59.21
By element:
Atomic # 1 Polarization: 16.17 SS G_CDS: 0.58 Total: 16.75 kcal
Atomic # 6 Polarization: -6.47 SS G_CDS: 4.77 Total: -1.70 kcal
Atomic # 7 Polarization: -82.30 SS G_CDS: -0.38 Total: -82.67 kcal
Atomic # 8 Polarization: -128.68 SS G_CDS: -4.78 Total: -133.46 kcal
Atomic # 14 Polarization: 30.05 SS G_CDS: 2.03 Total: 32.08 kcal
Atomic # 16 Polarization: 110.11 SS G_CDS: -0.33 Total: 109.79 kcal
Total: -61.11 1.90 -59.21 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034972469.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.837 kcal
(2) G-P(sol) polarization free energy of solvation -61.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds