Wall clock time and date at job start Tue Mar 31 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47241 * 2 1 4 4 C 1.46501 * 120.00016 * 90.00138 * 3 2 1 5 5 C 1.50697 * 109.47496 * 89.99793 * 4 3 2 6 6 H 1.08004 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99785 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00077 * 0.02562 * 7 5 4 10 10 H 1.48510 * 109.47266 * 89.99869 * 9 7 5 11 11 H 1.48499 * 109.47085 * 209.99747 * 9 7 5 12 12 H 1.48501 * 109.47361 * 329.99717 * 9 7 5 13 13 C 1.34776 * 119.99883 * 269.71901 * 3 2 1 14 14 O 1.21281 * 120.00018 * 179.97438 * 13 3 2 15 15 C 1.50691 * 119.99993 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47228 * 179.97438 * 15 13 3 17 17 C 1.46960 * 110.99805 * 293.79525 * 16 15 13 18 18 C 1.53052 * 109.36813 * 176.81067 * 17 16 15 19 19 N 1.46964 * 109.36031 * 58.39969 * 18 17 16 20 20 C 1.46906 * 110.99539 * 176.81306 * 19 18 17 21 21 C 1.53000 * 109.46563 * 199.50961 * 20 19 18 22 22 O 1.42898 * 109.47376 * 64.65309 * 21 20 19 23 23 C 1.46951 * 110.88181 * 300.68426 * 19 18 17 24 24 C 1.46956 * 111.00307 * 169.99860 * 16 15 13 25 25 H 1.09000 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47176 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47053 * 60.00174 * 1 2 3 28 28 H 1.08996 * 109.47108 * 239.99121 * 2 1 3 29 29 H 1.09007 * 109.46778 * 120.00273 * 2 1 3 30 30 H 1.09000 * 109.46865 * 209.99830 * 4 3 2 31 31 H 1.08999 * 109.47483 * 329.99652 * 4 3 2 32 32 H 0.97000 * 119.99761 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46939 * 299.99379 * 15 13 3 34 34 H 1.09000 * 109.47588 * 59.99678 * 15 13 3 35 35 H 1.09004 * 109.49132 * 296.78074 * 17 16 15 36 36 H 1.09001 * 109.48603 * 56.84271 * 17 16 15 37 37 H 1.08999 * 109.48914 * 298.43914 * 18 17 16 38 38 H 1.08996 * 109.49082 * 178.37094 * 18 17 16 39 39 H 1.09002 * 109.46880 * 319.50743 * 20 19 18 40 40 H 1.08996 * 109.47059 * 79.51069 * 20 19 18 41 41 H 1.09002 * 109.46871 * 184.65321 * 21 20 19 42 42 H 1.09004 * 109.47036 * 304.64628 * 21 20 19 43 43 H 0.96697 * 113.99631 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.48970 * 299.35126 * 23 19 18 45 45 H 1.09001 * 109.48596 * 179.29032 * 23 19 18 46 46 H 1.08996 * 109.48904 * 303.15289 * 24 16 15 47 47 H 1.09002 * 109.49051 * 63.22154 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 1.2687 5 6 3.6857 1.8349 1.7038 6 1 4.3426 1.2301 1.0963 7 6 4.1493 2.3904 2.8775 8 7 5.3913 2.1833 3.2575 9 14 3.0130 3.4359 3.9287 10 1 2.3081 2.5699 4.9078 11 1 3.8104 4.4567 4.6549 12 1 2.0172 4.1124 3.0592 13 6 2.2483 2.0145 -1.1672 14 8 2.6522 3.1581 -1.1672 15 6 2.0026 1.3022 -2.4722 16 7 2.3255 2.2005 -3.5888 17 6 1.3965 3.3383 -3.6349 18 6 1.8138 4.2891 -4.7594 19 7 1.8156 3.5621 -6.0366 20 6 2.1385 4.4605 -7.1532 21 6 1.6694 3.8308 -8.4663 22 8 0.2446 3.7212 -8.4598 23 6 2.7446 2.4244 -5.9904 24 6 2.3273 1.4737 -4.8660 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0956 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 5.7175 2.5744 4.0830 33 1 2.6328 0.4144 -2.5258 34 1 0.9548 1.0083 -2.5341 35 1 0.3859 2.9752 -3.8221 36 1 1.4225 3.8678 -2.6825 37 1 2.8138 4.6733 -4.5583 38 1 1.1093 5.1189 -4.8142 39 1 1.6346 5.4161 -7.0080 40 1 3.2160 4.6200 -7.1912 41 1 1.9818 4.4574 -9.3017 42 1 2.1097 2.8392 -8.5714 43 1 -0.1233 3.3298 -9.2638 44 1 3.7552 2.7874 -5.8033 45 1 2.7186 1.8949 -6.9428 46 1 3.0318 0.6438 -4.8112 47 1 1.3273 1.0894 -5.0672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076453659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:22 Heat of formation + Delta-G solvation = -58.534403 kcal Electronic energy + Delta-G solvation = -25463.216166 eV Core-core repulsion = 21874.735705 eV Total energy + Delta-G solvation = -3588.480460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -39.79239 -38.70025 -37.02945 -35.46300 -34.85023 -32.68632 -30.92272 -30.54653 -30.18066 -28.38186 -26.82111 -24.48407 -23.53949 -22.95033 -22.04360 -21.56134 -19.77085 -18.30041 -17.68436 -16.88929 -16.64484 -16.40807 -15.57793 -15.33360 -15.11047 -14.71982 -14.50113 -14.35148 -14.20796 -13.66947 -13.61110 -13.44844 -13.21418 -12.94888 -12.55269 -12.25087 -12.14371 -11.99055 -11.88287 -11.64589 -11.52647 -11.35264 -11.18128 -10.95615 -10.84608 -10.70337 -10.58692 -10.44808 -10.19005 -10.05432 -9.49481 -8.92153 -8.56084 -8.39651 -8.10688 -7.65215 -6.05421 -4.03606 3.28795 3.36816 3.40127 3.41836 3.62901 3.74913 4.05834 4.19045 4.42630 4.80771 4.81688 4.97105 5.00247 5.07738 5.19893 5.23891 5.26717 5.28543 5.35139 5.38365 5.45568 5.50167 5.56410 5.60198 5.62067 5.66594 5.74447 5.80351 5.89061 5.98889 6.11085 6.15494 6.21439 6.40652 6.69089 6.87718 6.94205 7.00659 7.14472 7.23239 7.41633 7.45106 7.65352 8.31847 8.51196 8.97881 9.07612 9.55259 11.08160 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.003239 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.467882 B = 8641.272037 C = 9111.734616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.040 3.960 16 N -0.521 5.521 17 C 0.055 3.945 18 C 0.062 3.938 19 N -0.532 5.532 20 C 0.052 3.948 21 C 0.084 3.916 22 O -0.559 6.559 23 C 0.057 3.943 24 C 0.059 3.941 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.372 0.628 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -2.407 -21.299 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.091 4.091 16 N -0.246 5.246 17 C -0.073 4.073 18 C -0.066 4.066 19 N -0.257 5.257 20 C -0.076 4.076 21 C 0.005 3.995 22 O -0.363 6.363 23 C -0.071 4.071 24 C -0.069 4.069 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.217 0.783 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.999 -1.459 -20.531 22.883 hybrid contribution -0.381 0.080 0.125 0.408 sum -10.379 -1.379 -20.406 22.936 Atomic orbital electron populations 1.22232 0.96857 1.01524 1.02154 1.21427 0.93310 0.84022 1.03035 1.47946 1.64450 1.13414 1.07005 1.19614 0.97032 0.93579 0.80038 1.21345 0.95427 1.32650 1.07030 0.90790 1.24861 0.95013 0.95806 0.97391 1.69901 1.15211 1.45080 1.23537 0.86864 0.81308 0.80891 0.80775 1.20166 1.20997 1.18850 1.20155 0.78427 0.87120 0.84700 1.90628 1.44526 1.17980 1.86770 1.22020 1.00405 0.96148 0.90555 1.61773 1.52041 1.09010 1.01792 1.22323 0.92756 0.92268 0.99930 1.22147 1.00759 0.95905 0.87804 1.62141 1.50843 1.09527 1.03235 1.22131 0.98483 0.96529 0.90426 1.22168 0.81879 0.99032 0.96412 1.86618 1.20124 1.85688 1.43863 1.22182 0.94342 0.92540 0.98048 1.22138 1.00337 0.95846 0.88600 0.92011 0.92220 0.93120 0.91548 0.89745 0.94229 0.95826 0.92624 0.88398 0.92525 0.94831 0.88012 0.93687 0.90481 0.90180 0.93133 0.93709 0.93800 0.78278 0.93865 0.90670 0.90347 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.65 5.94 -4.05 -0.02 1.62 16 3 N -0.60 -12.24 2.46 -175.07 -0.43 -12.67 16 4 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 5 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 6 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.51 10.48 7.37 -10.99 -0.08 10.40 16 14 O -0.52 -12.92 13.92 5.56 0.08 -12.84 16 15 C 0.04 0.61 4.00 -4.98 -0.02 0.59 16 16 N -0.52 -8.07 4.45 -235.91 -1.05 -9.12 16 17 C 0.06 0.85 5.26 -3.76 -0.02 0.83 16 18 C 0.06 0.84 5.57 -3.76 -0.02 0.82 16 19 N -0.53 -6.44 4.58 -234.46 -1.07 -7.52 16 20 C 0.05 0.52 5.39 -3.82 -0.02 0.50 16 21 C 0.08 0.67 7.23 37.16 0.27 0.94 16 22 O -0.56 -5.29 13.60 -35.23 -0.48 -5.77 16 23 C 0.06 0.65 5.43 -3.77 -0.02 0.63 16 24 C 0.06 0.72 5.61 -3.77 -0.02 0.70 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.62 7.25 -51.93 -0.38 0.24 16 28 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 31 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.10 1.36 7.29 -51.93 -0.38 0.98 16 34 H 0.06 0.76 7.20 -51.93 -0.37 0.39 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.84 5.85 -51.93 -0.30 1.54 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 39 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 40 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.04 0.33 6.74 -51.93 -0.35 -0.03 16 43 H 0.37 1.77 9.12 45.56 0.42 2.19 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.70 6.72 -51.93 -0.35 0.35 16 46 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -36.00 366.77 -8.77 -44.77 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.40 Total: 0.78 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.04 Total: 7.00 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -1.78 Total: -56.58 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.40 Total: -18.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.00 -8.77 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076453659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.764 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds