Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47241 * 2 1 4 4 C 1.46501 * 120.00016 * 90.00138 * 3 2 1 5 5 C 1.50697 * 109.47496 * 89.99793 * 4 3 2 6 6 H 1.08004 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99785 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00077 * 0.02562 * 7 5 4 10 10 H 1.48510 * 109.47266 * 89.99869 * 9 7 5 11 11 H 1.48499 * 109.47085 * 209.99747 * 9 7 5 12 12 H 1.48501 * 109.47361 * 329.99717 * 9 7 5 13 13 C 1.34776 * 119.99883 * 269.71901 * 3 2 1 14 14 O 1.21281 * 120.00018 * 179.97438 * 13 3 2 15 15 C 1.50691 * 119.99993 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47228 * 179.97438 * 15 13 3 17 17 C 1.46960 * 110.99805 * 293.79525 * 16 15 13 18 18 C 1.53052 * 109.36813 * 176.81067 * 17 16 15 19 19 N 1.46964 * 109.36031 * 58.39969 * 18 17 16 20 20 C 1.46906 * 110.99539 * 176.81306 * 19 18 17 21 21 C 1.53000 * 109.46563 * 199.50961 * 20 19 18 22 22 O 1.42898 * 109.47376 * 64.65309 * 21 20 19 23 23 C 1.46951 * 110.88181 * 300.68426 * 19 18 17 24 24 C 1.46956 * 111.00307 * 169.99860 * 16 15 13 25 25 H 1.09000 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47176 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47053 * 60.00174 * 1 2 3 28 28 H 1.08996 * 109.47108 * 239.99121 * 2 1 3 29 29 H 1.09007 * 109.46778 * 120.00273 * 2 1 3 30 30 H 1.09000 * 109.46865 * 209.99830 * 4 3 2 31 31 H 1.08999 * 109.47483 * 329.99652 * 4 3 2 32 32 H 0.97000 * 119.99761 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46939 * 299.99379 * 15 13 3 34 34 H 1.09000 * 109.47588 * 59.99678 * 15 13 3 35 35 H 1.09004 * 109.49132 * 296.78074 * 17 16 15 36 36 H 1.09001 * 109.48603 * 56.84271 * 17 16 15 37 37 H 1.08999 * 109.48914 * 298.43914 * 18 17 16 38 38 H 1.08996 * 109.49082 * 178.37094 * 18 17 16 39 39 H 1.09002 * 109.46880 * 319.50743 * 20 19 18 40 40 H 1.08996 * 109.47059 * 79.51069 * 20 19 18 41 41 H 1.09002 * 109.46871 * 184.65321 * 21 20 19 42 42 H 1.09004 * 109.47036 * 304.64628 * 21 20 19 43 43 H 0.96697 * 113.99631 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.48970 * 299.35126 * 23 19 18 45 45 H 1.09001 * 109.48596 * 179.29032 * 23 19 18 46 46 H 1.08996 * 109.48904 * 303.15289 * 24 16 15 47 47 H 1.09002 * 109.49051 * 63.22154 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 1.2687 5 6 3.6857 1.8349 1.7038 6 1 4.3426 1.2301 1.0963 7 6 4.1493 2.3904 2.8775 8 7 5.3913 2.1833 3.2575 9 14 3.0130 3.4359 3.9287 10 1 2.3081 2.5699 4.9078 11 1 3.8104 4.4567 4.6549 12 1 2.0172 4.1124 3.0592 13 6 2.2483 2.0145 -1.1672 14 8 2.6522 3.1581 -1.1672 15 6 2.0026 1.3022 -2.4722 16 7 2.3255 2.2005 -3.5888 17 6 1.3965 3.3383 -3.6349 18 6 1.8138 4.2891 -4.7594 19 7 1.8156 3.5621 -6.0366 20 6 2.1385 4.4605 -7.1532 21 6 1.6694 3.8308 -8.4663 22 8 0.2446 3.7212 -8.4598 23 6 2.7446 2.4244 -5.9904 24 6 2.3273 1.4737 -4.8660 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0956 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 5.7175 2.5744 4.0830 33 1 2.6328 0.4144 -2.5258 34 1 0.9548 1.0083 -2.5341 35 1 0.3859 2.9752 -3.8221 36 1 1.4225 3.8678 -2.6825 37 1 2.8138 4.6733 -4.5583 38 1 1.1093 5.1189 -4.8142 39 1 1.6346 5.4161 -7.0080 40 1 3.2160 4.6200 -7.1912 41 1 1.9818 4.4574 -9.3017 42 1 2.1097 2.8392 -8.5714 43 1 -0.1233 3.3298 -9.2638 44 1 3.7552 2.7874 -5.8033 45 1 2.7186 1.8949 -6.9428 46 1 3.0318 0.6438 -4.8112 47 1 1.3273 1.0894 -5.0672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076453659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -89.292439 kcal Electronic energy + Delta-G solvation = -25464.549934 eV Core-core repulsion = 21874.735705 eV Total energy + Delta-G solvation = -3589.814229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.12327 -39.91663 -37.83582 -36.94910 -35.95346 -34.83566 -32.01884 -31.94906 -31.26687 -29.84911 -28.18347 -25.70156 -24.61230 -24.33611 -23.63813 -22.46727 -20.80048 -19.85988 -19.09598 -18.34334 -17.99574 -17.54874 -16.99350 -16.59628 -16.28402 -16.01559 -15.66604 -15.63541 -15.45002 -14.98731 -14.70827 -14.53176 -14.50290 -14.22828 -14.06133 -13.68759 -13.47331 -13.21766 -13.15678 -12.91019 -12.83319 -12.57322 -12.35690 -12.33684 -12.25611 -12.03410 -11.89814 -11.79115 -11.74073 -11.52092 -10.82145 -10.78423 -10.51699 -9.44264 -9.33968 -9.18608 -8.34022 -6.38510 1.30555 1.35407 1.46262 1.83679 2.21563 2.31036 2.85344 2.96917 3.00569 3.48890 3.66960 3.86034 4.06854 4.09841 4.15303 4.19157 4.27629 4.32069 4.42222 4.42430 4.46666 4.52002 4.54859 4.62697 4.64081 4.71953 4.78104 4.83426 4.89019 4.93398 4.95447 4.98541 5.02009 5.03277 5.06990 5.38309 5.47699 5.67838 5.86287 5.94809 6.14807 6.17018 6.26086 6.62827 6.76196 7.04860 7.22629 7.49364 8.83216 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.003239 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.467882 B = 8641.272037 C = 9111.734616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.533 4.533 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.250 1.250 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.054 3.946 16 N -0.546 5.546 17 C 0.062 3.938 18 C 0.068 3.932 19 N -0.536 5.536 20 C 0.046 3.954 21 C 0.087 3.913 22 O -0.585 6.585 23 C 0.058 3.942 24 C 0.061 3.939 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.017 0.983 31 H 0.045 0.955 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.391 0.609 44 H 0.030 0.970 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 -3.641 -22.878 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.174 1.174 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.077 4.077 16 N -0.271 5.271 17 C -0.066 4.066 18 C -0.060 4.060 19 N -0.261 5.261 20 C -0.081 4.081 21 C 0.009 3.991 22 O -0.392 6.392 23 C -0.070 4.070 24 C -0.067 4.067 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.239 0.761 44 H 0.048 0.952 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.276 -2.755 -22.153 25.477 hybrid contribution 0.396 0.414 0.530 0.781 sum -11.880 -2.341 -21.623 24.782 Atomic orbital electron populations 1.22147 0.94073 1.03610 1.01906 1.21764 0.95514 0.81183 1.03942 1.48078 1.64402 1.15288 1.05737 1.19235 0.94584 0.92991 0.82630 1.21570 0.97141 1.31875 1.06601 0.95423 1.25857 0.96743 0.97186 0.98998 1.70057 1.17481 1.46655 1.24487 0.85706 0.79115 0.79110 0.78991 1.17438 1.20782 1.18133 1.21179 0.77087 0.86775 0.86289 1.90602 1.46829 1.20470 1.87687 1.21941 1.02465 0.95704 0.87564 1.61724 1.52517 1.09639 1.03256 1.22132 0.93201 0.92484 0.98775 1.22017 0.99617 0.95868 0.88548 1.62194 1.51227 1.09942 1.02749 1.22263 0.99006 0.96177 0.90691 1.22169 0.81432 0.99810 0.95689 1.86556 1.20873 1.86147 1.45629 1.22247 0.93379 0.92354 0.99047 1.22238 1.01357 0.96102 0.86979 0.88679 0.93481 0.92380 0.88651 0.90935 0.96526 0.93687 0.92307 0.86393 0.89627 0.94166 0.91503 0.95797 0.89942 0.90852 0.92464 0.91537 0.92826 0.76063 0.95201 0.88011 0.88725 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.10 2.87 5.94 86.38 0.51 3.38 16 3 N -0.60 -24.80 2.46 -826.19 -2.03 -26.83 16 4 C 0.23 11.38 4.23 85.63 0.36 11.74 16 5 C -0.53 -32.08 9.94 25.60 0.25 -31.82 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.60 5.47 84.65 0.46 1.06 16 8 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 9 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 10 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 13 C 0.50 20.69 7.37 87.65 0.65 21.33 16 14 O -0.58 -29.74 13.92 -3.03 -0.04 -29.78 16 15 C 0.05 1.57 4.00 85.55 0.34 1.91 16 16 N -0.55 -16.42 4.45 -900.28 -4.00 -20.42 16 17 C 0.06 1.92 5.26 86.31 0.45 2.37 16 18 C 0.07 1.86 5.57 86.31 0.48 2.34 16 19 N -0.54 -12.26 4.58 -895.70 -4.11 -16.37 16 20 C 0.05 0.85 5.39 86.30 0.46 1.31 16 21 C 0.09 1.17 7.23 71.98 0.52 1.69 16 22 O -0.58 -9.68 13.60 -148.98 -2.03 -11.70 16 23 C 0.06 1.19 5.43 86.31 0.47 1.66 16 24 C 0.06 1.33 5.61 86.31 0.48 1.81 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.21 7.25 -2.38 -0.02 1.20 16 28 H 0.10 2.22 6.43 -2.39 -0.02 2.20 16 29 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 30 H 0.02 0.91 6.48 -2.39 -0.02 0.89 16 31 H 0.05 2.05 7.50 -2.39 -0.02 2.03 16 32 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.12 2.96 7.29 -2.38 -0.02 2.94 16 34 H 0.09 2.02 7.20 -2.39 -0.02 2.00 16 35 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 2.54 5.85 -2.39 -0.01 2.52 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 2.11 8.00 -2.39 -0.02 2.09 16 39 H 0.07 1.42 7.85 -2.39 -0.02 1.40 16 40 H 0.06 0.96 8.00 -2.39 -0.02 0.94 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.05 0.62 6.74 -2.39 -0.02 0.60 16 43 H 0.39 2.75 9.12 -74.06 -0.68 2.07 16 44 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.10 1.57 6.72 -2.39 -0.02 1.55 16 46 H 0.09 1.76 8.07 -2.39 -0.02 1.74 16 47 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.66 366.77 -3.62 -86.27 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.22 Total: 16.16 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 6.19 Total: 16.00 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -9.84 Total: -124.24 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -2.07 Total: -41.48 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -82.66 -3.62 -86.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076453659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.020 kcal (2) G-P(sol) polarization free energy of solvation -82.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds