Wall clock time and date at job start Tue Mar 31 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47198 * 2 1 4 4 C 1.34776 * 119.99758 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99773 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47123 * 174.28322 * 6 4 3 8 8 C 1.46903 * 111.00051 * 160.88545 * 7 6 4 9 9 C 1.50698 * 109.46794 * 287.67382 * 8 7 6 10 10 H 1.08001 * 120.00165 * 358.69667 * 9 8 7 11 11 C 1.37883 * 119.99512 * 178.68742 * 9 8 7 12 12 N 1.31518 * 119.99576 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00081 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46888 * 90.00284 * 13 11 9 15 15 H 1.48498 * 109.46981 * 209.99558 * 13 11 9 16 16 H 1.48497 * 109.47436 * 329.99835 * 13 11 9 17 17 C 1.46908 * 110.99969 * 284.83952 * 7 6 4 18 18 C 1.53000 * 109.46607 * 170.00026 * 17 7 6 19 19 N 1.46908 * 109.46607 * 180.02562 * 18 17 7 20 20 C 1.47018 * 110.99747 * 46.31617 * 19 18 17 21 21 C 1.53097 * 109.25449 * 182.34804 * 20 19 18 22 22 O 1.43022 * 109.29680 * 303.22537 * 21 20 19 23 23 C 1.43015 * 113.73863 * 58.64138 * 22 21 20 24 24 C 1.47012 * 110.99829 * 170.00028 * 19 18 17 25 25 H 1.08997 * 109.47186 * 59.99509 * 1 2 3 26 26 H 1.08998 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46389 * 299.99862 * 1 2 3 28 28 H 1.09000 * 109.47108 * 240.00337 * 2 1 3 29 29 H 1.08997 * 109.47186 * 120.00491 * 2 1 3 30 30 H 0.96994 * 119.99549 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47077 * 54.28825 * 6 4 3 32 32 H 1.08999 * 109.47362 * 294.28736 * 6 4 3 33 33 H 1.08996 * 109.47243 * 47.67525 * 8 7 6 34 34 H 1.09001 * 109.47158 * 167.67922 * 8 7 6 35 35 H 0.96992 * 119.99632 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47418 * 49.99953 * 17 7 6 37 37 H 1.08998 * 109.47082 * 289.99487 * 17 7 6 38 38 H 1.08998 * 109.47752 * 60.00118 * 18 17 7 39 39 H 1.08998 * 109.47413 * 299.99255 * 18 17 7 40 40 H 1.09002 * 109.46946 * 62.44150 * 20 19 18 41 41 H 1.08994 * 109.54661 * 302.30480 * 20 19 18 42 42 H 1.09001 * 109.51262 * 183.26304 * 21 20 19 43 43 H 1.09002 * 109.50786 * 63.17676 * 21 20 19 44 44 H 1.09000 * 109.50535 * 61.27341 * 23 22 21 45 45 H 1.09001 * 109.50068 * 181.35173 * 23 22 21 46 46 H 1.09004 * 109.50671 * 57.67096 * 24 19 18 47 47 H 1.09004 * 109.50571 * 297.53882 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3083 3.0506 0.1364 8 6 5.8766 4.3315 -0.3047 9 6 5.7938 4.4271 -1.8063 10 1 5.3816 3.6086 -2.3777 11 6 6.2443 5.5599 -2.4507 12 7 6.1716 5.6436 -3.7612 13 14 6.9576 6.9753 -1.4624 14 1 8.4219 6.7825 -1.3076 15 1 6.6992 8.2541 -2.1718 16 1 6.3191 7.0148 -0.1223 17 6 5.7079 2.7447 1.5166 18 6 7.2189 2.5104 1.5699 19 7 7.6183 2.2039 2.9501 20 6 6.7159 1.2114 3.5517 21 6 7.1320 0.9658 5.0044 22 8 8.4993 0.5477 5.0401 23 6 9.4053 1.4918 4.4631 24 6 9.0129 1.7420 3.0046 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1184 0.0004 31 1 3.4016 3.5910 0.8334 32 1 3.5681 3.5315 -0.9378 33 1 5.3151 5.1514 0.1432 34 1 6.9195 4.3926 0.0064 35 1 6.4882 6.4405 -4.2145 36 1 5.1889 1.8479 1.8549 37 1 5.4470 3.5817 2.1643 38 1 7.7379 3.4072 1.2317 39 1 7.4799 1.6734 0.9223 40 1 6.7780 0.2779 2.9925 41 1 5.6925 1.5854 3.5245 42 1 6.5022 0.1884 5.4370 43 1 7.0180 1.8867 5.5763 44 1 9.3576 2.4284 5.0187 45 1 10.4197 1.0952 4.5050 46 1 9.6656 2.5035 2.5776 47 1 9.1123 0.8166 2.4371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078686401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:01 Heat of formation + Delta-G solvation = -61.170987 kcal Electronic energy + Delta-G solvation = -25440.470686 eV Core-core repulsion = 21851.875894 eV Total energy + Delta-G solvation = -3588.594791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 5.86 seconds Orbital eigenvalues (eV) -39.68077 -39.27742 -37.03825 -35.37556 -34.86482 -32.49925 -31.28866 -30.83962 -29.62750 -28.31736 -26.74278 -24.61538 -23.99862 -22.68382 -22.05975 -20.64750 -20.16752 -19.52509 -17.02216 -16.76983 -16.48205 -16.11910 -15.82499 -15.52912 -15.15695 -15.07772 -14.94390 -14.46960 -14.27106 -14.12831 -13.52776 -13.34229 -13.33285 -12.65286 -12.52819 -12.45403 -12.28093 -12.02861 -11.89636 -11.79556 -11.60585 -11.42186 -11.35831 -10.97704 -10.83948 -10.58889 -10.48205 -10.16802 -9.92980 -9.66864 -9.36065 -9.25336 -8.86537 -8.59482 -8.24787 -7.42588 -6.08002 -4.05781 3.10007 3.25833 3.33123 3.35280 3.38314 3.73400 3.90640 4.38798 4.74080 4.88655 4.92603 5.00474 5.02887 5.03856 5.14224 5.22135 5.23045 5.27757 5.30830 5.46402 5.52845 5.54902 5.60535 5.71316 5.77476 5.81177 5.83401 5.85769 5.94816 5.96749 6.00197 6.11158 6.33700 6.35818 6.64041 6.72007 6.83415 7.02022 7.09812 7.12691 7.53842 7.67237 7.85131 7.95943 8.61076 8.66071 9.02576 9.53349 11.05046 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.007581 B = 0.005918 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.552306 B = 4730.446186 C = 8017.641811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.743 5.743 4 C 0.513 3.487 5 O -0.522 6.522 6 C 0.046 3.954 7 N -0.508 5.508 8 C 0.160 3.840 9 C -0.511 4.511 10 H 0.081 0.919 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.872 3.128 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.057 3.943 18 C 0.060 3.940 19 N -0.538 5.538 20 C 0.013 3.987 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.017 3.983 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.398 0.602 31 H 0.049 0.951 32 H 0.120 0.880 33 H -0.008 1.008 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -7.582 15.160 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.398 5.398 4 C 0.299 3.701 5 O -0.396 6.396 6 C -0.086 4.086 7 N -0.232 5.232 8 C 0.034 3.966 9 C -0.549 4.549 10 H 0.099 0.901 11 C -0.132 4.132 12 N -0.537 5.537 13 Si 0.699 3.301 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.071 4.071 18 C -0.067 4.067 19 N -0.264 5.264 20 C -0.115 4.115 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.111 4.111 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.231 0.769 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.010 0.990 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.730 -8.257 15.045 17.802 hybrid contribution -0.305 1.367 0.123 1.406 sum -5.035 -6.890 15.169 17.404 Atomic orbital electron populations 1.21995 0.94833 1.02853 1.02436 1.21187 0.93788 0.83742 1.02034 1.46119 1.07556 1.08330 1.77822 1.21038 0.81464 0.92397 0.75198 1.90656 1.55104 1.46288 1.47527 1.21877 0.90611 0.92224 1.03852 1.61471 1.06498 1.35743 1.19526 1.20308 0.94656 0.84238 0.97371 1.21040 1.41437 1.03162 0.89255 0.90109 1.24893 0.95487 0.98076 0.94725 1.69896 1.47447 1.28842 1.07547 0.86912 0.80131 0.82358 0.80675 1.20101 1.21200 1.19164 1.22145 0.95207 0.99676 0.90091 1.22148 0.96163 1.01711 0.86654 1.62308 1.01911 1.41898 1.20246 1.22844 0.98162 0.94881 0.95623 1.22681 0.82795 1.00254 0.95520 1.87953 1.16828 1.44971 1.81007 1.22652 0.93184 0.93097 0.92234 1.22765 0.90738 1.00029 0.97570 0.91929 0.91139 0.92171 0.91782 0.92055 0.76868 0.93301 0.86264 0.99043 0.95070 0.92641 0.91185 0.95391 0.89937 0.93338 0.93718 0.89361 0.88762 0.92482 0.92408 0.88649 0.89548 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.03 37.16 0.37 -0.88 16 2 C 0.12 1.31 6.39 -4.04 -0.03 1.28 16 3 N -0.74 -9.50 5.56 -60.29 -0.33 -9.84 16 4 C 0.51 8.86 7.37 -10.99 -0.08 8.78 16 5 O -0.52 -10.99 15.47 5.56 0.09 -10.91 16 6 C 0.05 0.83 5.31 -4.98 -0.03 0.80 16 7 N -0.51 -10.64 3.99 -237.51 -0.95 -11.59 16 8 C 0.16 3.76 3.67 -4.98 -0.02 3.74 16 9 C -0.51 -14.17 8.90 -34.44 -0.31 -14.48 16 10 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 13 Si 0.87 20.98 27.49 -169.99 -4.67 16.30 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.15 6.50 56.52 0.37 -5.79 16 17 C 0.06 1.03 3.87 -3.82 -0.01 1.02 16 18 C 0.06 1.06 5.24 -3.82 -0.02 1.04 16 19 N -0.54 -8.04 4.87 -234.30 -1.14 -9.18 16 20 C 0.01 0.18 4.94 -3.71 -0.02 0.16 16 21 C 0.06 0.75 7.01 37.21 0.26 1.01 16 22 O -0.39 -5.11 10.83 -35.23 -0.38 -5.49 16 23 C 0.07 0.75 7.01 37.21 0.26 1.01 16 24 C 0.02 0.23 5.63 -3.71 -0.02 0.21 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 31 H 0.05 0.75 8.01 -51.93 -0.42 0.34 16 32 H 0.12 2.31 7.10 -51.93 -0.37 1.94 16 33 H -0.01 -0.19 7.01 -51.93 -0.36 -0.55 16 34 H 0.03 0.74 5.43 -51.93 -0.28 0.46 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.24 4.97 -51.93 -0.26 0.98 16 37 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.08 1.53 6.28 -51.93 -0.33 1.21 16 39 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.17 6.05 -51.93 -0.31 0.86 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -33.47 367.24 -9.00 -42.47 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.18 Total: 3.42 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 0.26 Total: 5.59 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -1.65 Total: -56.92 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.30 Total: -16.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.47 -9.00 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078686401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.700 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.86 seconds