Wall clock time and date at job start Tue Mar 31 2020 03:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47198 * 2 1 4 4 C 1.34776 * 119.99758 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99773 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47123 * 174.28322 * 6 4 3 8 8 C 1.46903 * 111.00051 * 160.88545 * 7 6 4 9 9 C 1.50698 * 109.46794 * 287.67382 * 8 7 6 10 10 H 1.08001 * 120.00165 * 358.69667 * 9 8 7 11 11 C 1.37883 * 119.99512 * 178.68742 * 9 8 7 12 12 N 1.31518 * 119.99576 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00081 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46888 * 90.00284 * 13 11 9 15 15 H 1.48498 * 109.46981 * 209.99558 * 13 11 9 16 16 H 1.48497 * 109.47436 * 329.99835 * 13 11 9 17 17 C 1.46908 * 110.99969 * 284.83952 * 7 6 4 18 18 C 1.53000 * 109.46607 * 170.00026 * 17 7 6 19 19 N 1.46908 * 109.46607 * 180.02562 * 18 17 7 20 20 C 1.47018 * 110.99747 * 46.31617 * 19 18 17 21 21 C 1.53097 * 109.25449 * 182.34804 * 20 19 18 22 22 O 1.43022 * 109.29680 * 303.22537 * 21 20 19 23 23 C 1.43015 * 113.73863 * 58.64138 * 22 21 20 24 24 C 1.47012 * 110.99829 * 170.00028 * 19 18 17 25 25 H 1.08997 * 109.47186 * 59.99509 * 1 2 3 26 26 H 1.08998 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46389 * 299.99862 * 1 2 3 28 28 H 1.09000 * 109.47108 * 240.00337 * 2 1 3 29 29 H 1.08997 * 109.47186 * 120.00491 * 2 1 3 30 30 H 0.96994 * 119.99549 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47077 * 54.28825 * 6 4 3 32 32 H 1.08999 * 109.47362 * 294.28736 * 6 4 3 33 33 H 1.08996 * 109.47243 * 47.67525 * 8 7 6 34 34 H 1.09001 * 109.47158 * 167.67922 * 8 7 6 35 35 H 0.96992 * 119.99632 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47418 * 49.99953 * 17 7 6 37 37 H 1.08998 * 109.47082 * 289.99487 * 17 7 6 38 38 H 1.08998 * 109.47752 * 60.00118 * 18 17 7 39 39 H 1.08998 * 109.47413 * 299.99255 * 18 17 7 40 40 H 1.09002 * 109.46946 * 62.44150 * 20 19 18 41 41 H 1.08994 * 109.54661 * 302.30480 * 20 19 18 42 42 H 1.09001 * 109.51262 * 183.26304 * 21 20 19 43 43 H 1.09002 * 109.50786 * 63.17676 * 21 20 19 44 44 H 1.09000 * 109.50535 * 61.27341 * 23 22 21 45 45 H 1.09001 * 109.50068 * 181.35173 * 23 22 21 46 46 H 1.09004 * 109.50671 * 57.67096 * 24 19 18 47 47 H 1.09004 * 109.50571 * 297.53882 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3083 3.0506 0.1364 8 6 5.8766 4.3315 -0.3047 9 6 5.7938 4.4271 -1.8063 10 1 5.3816 3.6086 -2.3777 11 6 6.2443 5.5599 -2.4507 12 7 6.1716 5.6436 -3.7612 13 14 6.9576 6.9753 -1.4624 14 1 8.4219 6.7825 -1.3076 15 1 6.6992 8.2541 -2.1718 16 1 6.3191 7.0148 -0.1223 17 6 5.7079 2.7447 1.5166 18 6 7.2189 2.5104 1.5699 19 7 7.6183 2.2039 2.9501 20 6 6.7159 1.2114 3.5517 21 6 7.1320 0.9658 5.0044 22 8 8.4993 0.5477 5.0401 23 6 9.4053 1.4918 4.4631 24 6 9.0129 1.7420 3.0046 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1184 0.0004 31 1 3.4016 3.5910 0.8334 32 1 3.5681 3.5315 -0.9378 33 1 5.3151 5.1514 0.1432 34 1 6.9195 4.3926 0.0064 35 1 6.4882 6.4405 -4.2145 36 1 5.1889 1.8479 1.8549 37 1 5.4470 3.5817 2.1643 38 1 7.7379 3.4072 1.2317 39 1 7.4799 1.6734 0.9223 40 1 6.7780 0.2779 2.9925 41 1 5.6925 1.5854 3.5245 42 1 6.5022 0.1884 5.4370 43 1 7.0180 1.8867 5.5763 44 1 9.3576 2.4284 5.0187 45 1 10.4197 1.0952 4.5050 46 1 9.6656 2.5035 2.5776 47 1 9.1123 0.8166 2.4371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078686401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:51 Heat of formation + Delta-G solvation = -89.050730 kcal Electronic energy + Delta-G solvation = -25441.679642 eV Core-core repulsion = 21851.875894 eV Total energy + Delta-G solvation = -3589.803748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93772 -40.47432 -38.45279 -36.59625 -36.12256 -34.60309 -32.30851 -31.93391 -30.97916 -30.04034 -27.97503 -26.07734 -25.04942 -23.94357 -23.40754 -21.98957 -21.36756 -20.99527 -19.02878 -18.13898 -17.73364 -17.13543 -16.99285 -16.81079 -16.55973 -16.19691 -16.01634 -15.97755 -15.62720 -15.36426 -15.03535 -14.76970 -14.62470 -14.40131 -13.91229 -13.74421 -13.35980 -13.28283 -13.19017 -12.86273 -12.77841 -12.67300 -12.39277 -12.36234 -12.30550 -12.18745 -11.86284 -11.71446 -11.47797 -11.43241 -10.81023 -10.70557 -10.67072 -10.04618 -9.48314 -9.02676 -8.26523 -6.30202 1.37902 1.38166 1.48949 1.70824 2.17295 2.35830 2.61122 2.93561 3.06847 3.34822 3.79267 3.90661 3.94879 3.99605 4.10770 4.17465 4.18526 4.22448 4.29411 4.31010 4.40836 4.47096 4.53130 4.56013 4.58099 4.69416 4.78443 4.80136 4.84399 4.92559 4.93872 4.95589 4.99091 5.06125 5.07413 5.26710 5.53733 5.55236 5.78518 5.91382 5.99723 6.14868 6.20931 6.61448 6.66187 6.76446 7.33224 7.35635 8.90304 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.007581 B = 0.005918 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.552306 B = 4730.446186 C = 8017.641811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.112 3.888 3 N -0.723 5.723 4 C 0.513 3.487 5 O -0.567 6.567 6 C 0.046 3.954 7 N -0.535 5.535 8 C 0.173 3.827 9 C -0.514 4.514 10 H 0.032 0.968 11 C 0.011 3.989 12 N -0.948 5.948 13 Si 0.945 3.055 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.244 1.244 17 C 0.067 3.933 18 C 0.069 3.931 19 N -0.536 5.536 20 C 0.013 3.987 21 C 0.068 3.932 22 O -0.404 6.404 23 C 0.068 3.932 24 C 0.013 3.987 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.002 0.998 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.024 0.976 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -6.692 18.163 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 N -0.378 5.378 4 C 0.299 3.701 5 O -0.445 6.445 6 C -0.085 4.085 7 N -0.260 5.260 8 C 0.047 3.953 9 C -0.553 4.553 10 H 0.050 0.950 11 C -0.186 4.186 12 N -0.589 5.589 13 Si 0.768 3.232 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.168 1.168 17 C -0.060 4.060 18 C -0.059 4.059 19 N -0.261 5.261 20 C -0.115 4.115 21 C -0.009 4.009 22 O -0.323 6.323 23 C -0.008 4.008 24 C -0.115 4.115 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.251 0.749 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.019 0.981 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.136 0.864 46 H 0.112 0.888 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.505 -7.374 18.074 20.281 hybrid contribution -0.155 0.971 -0.875 1.316 sum -5.660 -6.403 17.199 19.205 Atomic orbital electron populations 1.21941 0.91482 1.04221 1.03352 1.21348 0.96428 0.82311 1.01033 1.45986 1.06283 1.09903 1.75655 1.20933 0.82634 0.91527 0.74964 1.90638 1.56587 1.47234 1.50046 1.21872 0.89334 0.93177 1.04133 1.61308 1.08429 1.34474 1.21762 1.20026 0.95094 0.85861 0.94323 1.21207 1.40774 1.01761 0.91530 0.95011 1.25812 0.95840 1.01220 0.95723 1.70058 1.49052 1.30033 1.09719 0.85754 0.79446 0.78173 0.79815 1.19442 1.20777 1.16781 1.22084 0.95317 1.00130 0.88515 1.21964 0.95955 1.00087 0.87922 1.62354 1.03047 1.42577 1.18146 1.22902 0.98253 0.93550 0.96775 1.22776 0.82558 1.01618 0.93934 1.87940 1.17516 1.45840 1.80988 1.22765 0.93936 0.93558 0.90559 1.22892 0.89895 0.99573 0.99140 0.91493 0.89583 0.90700 0.93594 0.92378 0.74923 0.89855 0.88254 0.98054 0.94921 0.92456 0.90901 0.93937 0.90972 0.96150 0.95748 0.88980 0.86703 0.91299 0.91375 0.86424 0.88822 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.03 71.98 0.72 -1.24 16 2 C 0.11 2.43 6.39 86.38 0.55 2.98 16 3 N -0.72 -17.84 5.56 -463.06 -2.57 -20.41 16 4 C 0.51 17.83 7.37 87.66 0.65 18.48 16 5 O -0.57 -24.58 15.47 -3.02 -0.05 -24.63 16 6 C 0.05 1.66 5.31 85.56 0.45 2.11 16 7 N -0.54 -22.59 3.99 -905.35 -3.61 -26.20 16 8 C 0.17 8.11 3.67 85.56 0.31 8.42 16 9 C -0.51 -29.42 8.90 25.60 0.23 -29.19 16 10 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 11 C 0.01 0.66 5.47 84.66 0.46 1.12 16 12 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 13 Si 0.94 42.96 27.49 68.60 1.89 44.85 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.24 -10.16 6.50 99.48 0.65 -9.51 16 17 C 0.07 2.38 3.87 86.30 0.33 2.72 16 18 C 0.07 2.42 5.24 86.30 0.45 2.87 16 19 N -0.54 -15.51 4.87 -895.20 -4.36 -19.87 16 20 C 0.01 0.35 4.94 86.31 0.43 0.78 16 21 C 0.07 1.43 7.01 72.01 0.50 1.94 16 22 O -0.40 -9.75 10.83 -148.98 -1.61 -11.37 16 23 C 0.07 1.41 7.01 72.01 0.50 1.92 16 24 C 0.01 0.34 5.63 86.31 0.49 0.82 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.41 7.47 8.47 -92.71 -0.79 6.69 16 31 H 0.08 2.39 8.01 -2.38 -0.02 2.37 16 32 H 0.10 3.96 7.10 -2.39 -0.02 3.94 16 33 H 0.00 0.08 7.01 -2.39 -0.02 0.06 16 34 H 0.03 1.53 5.43 -2.39 -0.01 1.51 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.07 2.55 4.97 -2.39 -0.01 2.53 16 37 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 38 H 0.07 2.67 6.28 -2.39 -0.01 2.65 16 39 H 0.02 0.81 8.08 -2.39 -0.02 0.80 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.09 2.32 6.05 -2.39 -0.01 2.30 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -75.33 367.24 -3.83 -79.16 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.10 Total: 23.29 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.09 Total: 13.72 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -10.25 Total: -125.01 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.66 Total: -36.00 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.89 Total: 44.85 kcal Total: -75.33 -3.83 -79.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078686401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds