Wall clock time and date at job start Tue Mar 31 2020 03:51:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.37237 * 125.68534 * 2 1
4 4 C 1.46148 * 125.97350 * 0.02562 * 3 2 1
5 5 O 1.21379 * 119.99900 * 0.26970 * 4 3 2
6 6 C 1.38587 * 108.04989 * 180.22693 * 3 2 1
7 7 Br 1.89102 * 126.28444 * 179.79582 * 6 3 2
8 8 C 1.39286 * 107.42514 * 359.77081 * 6 3 2
9 9 C 1.36726 * 125.68784 * 179.82974 * 2 1 3
10 10 C 1.47158 * 125.84105 * 0.04014 * 9 2 1
11 11 O 1.21671 * 119.99941 * 4.59009 * 10 9 2
12 12 N 1.34772 * 120.00220 * 184.58787 * 10 9 2
13 13 C 1.36562 * 120.00252 * 174.81616 * 12 10 9
14 14 H 1.08001 * 120.00311 * 359.72693 * 13 12 10
15 15 C 1.39249 * 120.00035 * 179.97438 * 13 12 10
16 16 N 1.31238 * 119.99804 * 0.02562 * 15 13 12
17 17 Si 1.86804 * 120.00096 * 180.02562 * 15 13 12
18 18 H 1.48500 * 109.46920 * 59.99991 * 17 15 13
19 19 H 1.48494 * 109.47230 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47124 * 300.00414 * 17 15 13
21 21 H 1.09000 * 109.47162 * 274.65214 * 1 2 3
22 22 H 1.08993 * 109.47254 * 34.65420 * 1 2 3
23 23 H 1.09009 * 109.46978 * 154.65488 * 1 2 3
24 24 H 1.07996 * 119.99684 * 180.26087 * 4 3 2
25 25 H 1.07998 * 126.21109 * 179.97438 * 8 6 3
26 26 H 0.97000 * 119.99844 * 354.82541 * 12 10 9
27 27 H 0.97004 * 119.99715 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2655 1.1147 0.0000
4 6 1.8056 2.5019 0.0005
5 8 0.6169 2.7472 0.0060
6 6 3.5862 0.6948 -0.0052
7 35 5.1145 1.8085 -0.0130
8 6 3.5811 -0.6980 -0.0031
9 6 2.2626 -1.1105 0.0033
10 6 1.7963 -2.5063 0.0066
11 8 0.6074 -2.7507 -0.0778
12 7 2.6862 -3.5138 0.1031
13 6 2.2490 -4.8029 0.2128
14 1 1.1901 -5.0146 0.2268
15 6 3.1685 -5.8439 0.3119
16 7 4.4553 -5.5861 0.3004
17 14 2.5705 -7.6073 0.4613
18 1 1.7592 -7.9576 -0.7321
19 1 3.7383 -8.5200 0.5520
20 1 1.7384 -7.7459 1.6835
21 1 -0.3633 0.0833 1.0243
22 1 -0.3633 0.8453 -0.5843
23 1 -0.3633 -0.9288 -0.4399
24 1 2.5235 3.3087 -0.0038
25 1 4.4502 -1.3392 -0.0064
26 1 3.6373 -3.3233 0.0946
27 1 5.0958 -6.3113 0.3690
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000155526446.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:51:04
Heat of formation + Delta-G solvation = -24.076378 kcal
Electronic energy + Delta-G solvation = -16193.717683 eV
Core-core repulsion = 13191.961873 eV
Total energy + Delta-G solvation = -3001.755810 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 299.990 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.25811 -38.64870 -37.73646 -34.38286 -33.10109 -31.69207 -30.62918 -29.43318
-26.10108 -25.80247 -23.79773 -21.13541 -20.17205 -18.92236 -18.20486 -17.03522
-15.76471 -15.58005 -15.54434 -14.90861 -14.29588 -13.90602 -13.64389 -13.34771
-13.28079 -13.05400 -12.72559 -12.32440 -11.82276 -11.68431 -11.24203 -10.78448
-10.60489 -10.49059 -10.44486 -9.78880 -9.77581 -8.73015 -8.51187 -8.30290
-8.06673 -6.71351 -4.03782 0.90923 1.68177 2.22471 2.90766 2.97974
3.11303 3.13852 3.18236 3.97753 4.07971 4.26079 4.69343 5.07296
5.11045 5.13921 5.33582 5.56424 5.70362 5.85331 6.02103 6.19581
6.57212 6.93157 7.12597 7.28118 7.40613 7.76520 8.31562 8.87679
9.21503 9.74547 10.44471
Molecular weight = 299.99amu
Principal moments of inertia in cm(-1)
A = 0.021271 B = 0.004807 C = 0.003932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.048453 B = 5823.647087 C = 7118.751297
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.369 5.369
3 C -0.079 4.079
4 C 0.407 3.593
5 O -0.472 6.472
6 C -0.100 4.100
7 Br -0.027 7.027
8 C -0.158 4.158
9 C 0.057 3.943
10 C 0.478 3.522
11 O -0.599 6.599
12 N -0.519 5.519
13 C -0.300 4.300
14 H 0.110 0.890
15 C 0.029 3.971
16 N -0.878 5.878
17 Si 0.938 3.062
18 H -0.270 1.270
19 H -0.281 1.281
20 H -0.270 1.270
21 H 0.076 0.924
22 H 0.090 0.910
23 H 0.117 0.883
24 H 0.123 0.877
25 H 0.158 0.842
26 H 0.398 0.602
27 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.288 13.551 -0.390 13.949
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.041 5.041
3 C -0.195 4.195
4 C 0.268 3.732
5 O -0.347 6.347
6 C -0.189 4.189
7 Br 0.057 6.943
8 C -0.184 4.184
9 C -0.065 4.065
10 C 0.265 3.735
11 O -0.488 6.488
12 N -0.152 5.152
13 C -0.430 4.430
14 H 0.128 0.872
15 C -0.176 4.176
16 N -0.517 5.517
17 Si 0.764 3.236
18 H -0.195 1.195
19 H -0.206 1.206
20 H -0.195 1.195
21 H 0.094 0.906
22 H 0.108 0.892
23 H 0.135 0.865
24 H 0.139 0.861
25 H 0.176 0.824
26 H 0.233 0.767
27 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 2.206 13.809 -0.415 13.991
hybrid contribution 0.305 -1.047 0.120 1.097
sum 2.511 12.763 -0.295 13.011
Atomic orbital electron populations
1.22560 0.74704 1.06442 1.04159 1.43949 1.07421 1.03901 1.48810
1.21089 0.89341 0.90242 1.18845 1.23197 0.90996 0.88511 0.70508
1.90536 1.20465 1.86943 1.36715 1.21425 0.90017 0.94428 1.12993
1.96583 1.34985 1.64743 1.97985 1.21215 0.95853 0.92717 1.08566
1.21062 0.89366 0.89365 1.06752 1.16499 0.86585 0.82160 0.88220
1.90588 1.15816 1.83673 1.58719 1.41538 1.08681 1.05559 1.59428
1.19782 0.95180 0.80951 1.47057 0.87190 1.25461 0.94795 1.01125
0.96235 1.69528 1.00927 1.34772 1.46461 0.85795 0.78202 0.80184
0.79444 1.19472 1.20607 1.19501 0.90557 0.89189 0.86455 0.86131
0.82426 0.76723 0.90991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.02 10.04 59.84 0.60 1.62 15
2 N -0.37 -6.64 3.18 -115.94 -0.37 -7.01 15
3 C -0.08 -1.24 6.86 -82.14 -0.56 -1.80 15
4 C 0.41 5.37 11.43 33.90 0.39 5.76 15
5 O -0.47 -7.32 15.54 5.47 0.09 -7.24 15
6 C -0.10 -1.54 6.63 -39.06 -0.26 -1.80 15
7 Br -0.03 -0.33 33.68 -68.01 -2.29 -2.62 15
8 C -0.16 -2.75 10.29 -39.22 -0.40 -3.15 15
9 C 0.06 1.14 6.86 -82.09 -0.56 0.57 15
10 C 0.48 11.27 7.74 -12.64 -0.10 11.17 15
11 O -0.60 -15.52 14.06 5.21 0.07 -15.45 15
12 N -0.52 -12.68 5.25 -12.05 -0.06 -12.74 15
13 C -0.30 -7.84 9.67 -15.07 -0.15 -7.99 15
14 H 0.11 2.98 7.16 -52.49 -0.38 2.61 15
15 C 0.03 0.73 5.50 -17.43 -0.10 0.63 15
16 N -0.88 -22.20 13.04 55.51 0.72 -21.48 15
17 Si 0.94 19.55 29.56 -169.99 -5.02 14.53 15
18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15
19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15
20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15
21 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15
22 H 0.09 1.35 6.56 -51.93 -0.34 1.01 15
23 H 0.12 2.14 5.92 -51.92 -0.31 1.83 15
24 H 0.12 1.14 7.87 -52.49 -0.41 0.73 15
25 H 0.16 2.58 7.41 -52.49 -0.39 2.19 15
26 H 0.40 9.24 6.76 -40.82 -0.28 8.97 15
27 H 0.28 6.65 8.31 -40.82 -0.34 6.31 15
LS Contribution 268.78 15.07 4.05 4.05
Total: -1.00 -28.63 268.78 -5.61 -34.25
By element:
Atomic # 1 Polarization: 10.36 SS G_CDS: -1.66 Total: 8.70 kcal
Atomic # 6 Polarization: 6.15 SS G_CDS: -1.14 Total: 5.01 kcal
Atomic # 7 Polarization: -41.52 SS G_CDS: 0.29 Total: -41.23 kcal
Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.69 kcal
Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal
Atomic # 35 Polarization: -0.33 SS G_CDS: -2.29 Total: -2.62 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -28.63 -5.61 -34.25 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000155526446.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.169 kcal
(2) G-P(sol) polarization free energy of solvation -28.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.245 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds