Wall clock time and date at job start Tue Mar 31 2020 03:51:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.37237 * 125.68534 * 2 1
4 4 C 1.46148 * 125.97350 * 0.02562 * 3 2 1
5 5 O 1.21379 * 119.99900 * 0.26970 * 4 3 2
6 6 C 1.38587 * 108.04989 * 180.22693 * 3 2 1
7 7 Br 1.89102 * 126.28444 * 179.79582 * 6 3 2
8 8 C 1.39286 * 107.42514 * 359.77081 * 6 3 2
9 9 C 1.36726 * 125.68784 * 179.82974 * 2 1 3
10 10 C 1.47158 * 125.84105 * 0.04014 * 9 2 1
11 11 O 1.21671 * 119.99941 * 4.59009 * 10 9 2
12 12 N 1.34772 * 120.00220 * 184.58787 * 10 9 2
13 13 C 1.36562 * 120.00252 * 174.81616 * 12 10 9
14 14 H 1.08001 * 120.00311 * 359.72693 * 13 12 10
15 15 C 1.39249 * 120.00035 * 179.97438 * 13 12 10
16 16 N 1.31238 * 119.99804 * 0.02562 * 15 13 12
17 17 Si 1.86804 * 120.00096 * 180.02562 * 15 13 12
18 18 H 1.48500 * 109.46920 * 59.99991 * 17 15 13
19 19 H 1.48494 * 109.47230 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47124 * 300.00414 * 17 15 13
21 21 H 1.09000 * 109.47162 * 274.65214 * 1 2 3
22 22 H 1.08993 * 109.47254 * 34.65420 * 1 2 3
23 23 H 1.09009 * 109.46978 * 154.65488 * 1 2 3
24 24 H 1.07996 * 119.99684 * 180.26087 * 4 3 2
25 25 H 1.07998 * 126.21109 * 179.97438 * 8 6 3
26 26 H 0.97000 * 119.99844 * 354.82541 * 12 10 9
27 27 H 0.97004 * 119.99715 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2655 1.1147 0.0000
4 6 1.8056 2.5019 0.0005
5 8 0.6169 2.7472 0.0060
6 6 3.5862 0.6948 -0.0052
7 35 5.1145 1.8085 -0.0130
8 6 3.5811 -0.6980 -0.0031
9 6 2.2626 -1.1105 0.0033
10 6 1.7963 -2.5063 0.0066
11 8 0.6074 -2.7507 -0.0778
12 7 2.6862 -3.5138 0.1031
13 6 2.2490 -4.8029 0.2128
14 1 1.1901 -5.0146 0.2268
15 6 3.1685 -5.8439 0.3119
16 7 4.4553 -5.5861 0.3004
17 14 2.5705 -7.6073 0.4613
18 1 1.7592 -7.9576 -0.7321
19 1 3.7383 -8.5200 0.5520
20 1 1.7384 -7.7459 1.6835
21 1 -0.3633 0.0833 1.0243
22 1 -0.3633 0.8453 -0.5843
23 1 -0.3633 -0.9288 -0.4399
24 1 2.5235 3.3087 -0.0038
25 1 4.4502 -1.3392 -0.0064
26 1 3.6373 -3.3233 0.0946
27 1 5.0958 -6.3113 0.3690
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000155526446.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:51:04
Heat of formation + Delta-G solvation = -42.640308 kcal
Electronic energy + Delta-G solvation = -16194.522675 eV
Core-core repulsion = 13191.961873 eV
Total energy + Delta-G solvation = -3002.560802 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 299.990 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.63748 -40.08944 -39.34220 -36.25303 -34.48542 -33.48809 -31.97277 -30.73959
-27.62390 -27.35259 -25.31603 -22.59962 -21.57113 -20.54710 -19.93881 -18.54321
-17.22027 -16.96078 -16.89591 -16.63738 -15.98664 -15.41915 -15.22362 -14.85329
-14.62199 -14.45571 -14.21036 -13.63015 -13.60358 -13.09759 -12.97016 -12.50811
-12.12925 -11.94146 -11.64026 -11.61020 -10.91525 -10.58677 -10.19807 -9.83841
-9.43949 -8.59296 -6.03019 -0.34142 0.49031 0.78125 1.41857 1.46293
1.51176 1.60456 1.80156 2.26301 2.31220 2.99330 3.15966 3.19093
3.74676 3.87797 4.06759 4.20321 4.25842 4.51442 4.66314 4.72584
5.20679 5.32055 5.56812 5.75033 5.85957 6.26781 6.42900 6.95744
7.33621 7.87765 8.57061
Molecular weight = 299.99amu
Principal moments of inertia in cm(-1)
A = 0.021271 B = 0.004807 C = 0.003932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.048453 B = 5823.647087 C = 7118.751297
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.066 3.934
2 N -0.378 5.378
3 C -0.065 4.065
4 C 0.419 3.581
5 O -0.489 6.489
6 C -0.105 4.105
7 Br 0.013 6.987
8 C -0.145 4.145
9 C 0.015 3.985
10 C 0.482 3.518
11 O -0.630 6.630
12 N -0.530 5.530
13 C -0.339 4.339
14 H 0.089 0.911
15 C -0.003 4.003
16 N -0.901 5.901
17 Si 0.999 3.001
18 H -0.269 1.269
19 H -0.267 1.267
20 H -0.269 1.269
21 H 0.083 0.917
22 H 0.106 0.894
23 H 0.094 0.906
24 H 0.174 0.826
25 H 0.164 0.836
26 H 0.401 0.599
27 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.332 15.408 -0.304 16.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.050 5.050
3 C -0.182 4.182
4 C 0.280 3.720
5 O -0.363 6.363
6 C -0.193 4.193
7 Br 0.097 6.903
8 C -0.172 4.172
9 C -0.106 4.106
10 C 0.271 3.729
11 O -0.520 6.520
12 N -0.164 5.164
13 C -0.468 4.468
14 H 0.107 0.893
15 C -0.206 4.206
16 N -0.539 5.539
17 Si 0.821 3.179
18 H -0.194 1.194
19 H -0.191 1.191
20 H -0.194 1.194
21 H 0.101 0.899
22 H 0.125 0.875
23 H 0.112 0.888
24 H 0.190 0.810
25 H 0.181 0.819
26 H 0.236 0.764
27 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 3.264 15.667 -0.329 16.007
hybrid contribution 0.000 -1.333 0.077 1.335
sum 3.264 14.334 -0.252 14.703
Atomic orbital electron populations
1.22513 0.74375 1.05863 1.04678 1.44150 1.07895 1.04140 1.48791
1.21858 0.89361 0.90887 1.16142 1.23894 0.91339 0.87850 0.68927
1.90550 1.21791 1.86804 1.37176 1.21568 0.91398 0.94019 1.12300
1.96628 1.32758 1.63001 1.97879 1.21345 0.94921 0.94068 1.06841
1.20537 0.90754 0.88070 1.11262 1.17045 0.86061 0.83668 0.86147
1.90552 1.17195 1.84830 1.59469 1.41502 1.08849 1.05398 1.60601
1.19744 0.94654 0.82405 1.50041 0.89314 1.26210 0.94824 1.04320
0.95211 1.69578 1.01552 1.35992 1.46781 0.84900 0.78050 0.75719
0.79191 1.19443 1.19144 1.19381 0.89852 0.87520 0.88763 0.81049
0.81887 0.76371 0.90456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 2.17 10.04 127.77 1.28 3.45 15
2 N -0.38 -13.36 3.18 -520.71 -1.66 -15.01 15
3 C -0.06 -1.88 6.86 40.44 0.28 -1.60 15
4 C 0.42 9.44 11.43 69.87 0.80 10.24 15
5 O -0.49 -13.60 15.54 -3.34 -0.05 -13.65 15
6 C -0.11 -2.97 6.63 22.61 0.15 -2.82 15
7 Br 0.01 0.27 33.68 -20.37 -0.69 -0.42 15
8 C -0.15 -4.95 10.29 22.50 0.23 -4.71 15
9 C 0.01 0.59 6.86 40.71 0.28 0.87 15
10 C 0.48 23.68 7.74 86.59 0.67 24.35 15
11 O -0.63 -34.26 14.06 -4.26 -0.06 -34.32 15
12 N -0.53 -26.98 5.25 -310.27 -1.63 -28.61 15
13 C -0.34 -18.50 9.67 84.20 0.81 -17.68 15
14 H 0.09 5.10 7.16 -2.91 -0.02 5.08 15
15 C 0.00 -0.13 5.50 85.02 0.47 0.34 15
16 N -0.90 -45.99 13.04 21.71 0.28 -45.71 15
17 Si 1.00 40.44 29.56 68.60 2.03 42.46 15
18 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15
19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15
20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15
21 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15
22 H 0.11 3.09 6.56 -2.39 -0.02 3.08 15
23 H 0.09 3.57 5.92 -2.38 -0.01 3.55 15
24 H 0.17 2.28 7.87 -2.91 -0.02 2.26 15
25 H 0.16 5.26 7.41 -2.91 -0.02 5.24 15
26 H 0.40 19.32 6.76 -92.71 -0.63 18.70 15
27 H 0.29 13.53 8.31 -92.71 -0.77 12.76 15
Total: -1.00 -62.97 268.78 3.81 -59.16
By element:
Atomic # 1 Polarization: 23.05 SS G_CDS: 0.61 Total: 23.66 kcal
Atomic # 6 Polarization: 7.47 SS G_CDS: 4.97 Total: 12.44 kcal
Atomic # 7 Polarization: -86.33 SS G_CDS: -3.00 Total: -89.33 kcal
Atomic # 8 Polarization: -47.86 SS G_CDS: -0.11 Total: -47.97 kcal
Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal
Atomic # 35 Polarization: 0.27 SS G_CDS: -0.69 Total: -0.42 kcal
Total: -62.97 3.81 -59.16 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000155526446.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.517 kcal
(2) G-P(sol) polarization free energy of solvation -62.966 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.640 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds