Wall clock time and date at job start Tue Mar 31 2020 03:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47095 * 134.10964 * 3 2 1 5 5 C 1.36934 * 119.99841 * 273.01136 * 4 3 2 6 6 H 1.08005 * 120.00007 * 187.47632 * 5 4 3 7 7 C 1.38811 * 120.00264 * 7.48843 * 5 4 3 8 8 N 1.31620 * 119.99869 * 27.06034 * 7 5 4 9 9 Si 1.86798 * 120.00133 * 207.06450 * 7 5 4 10 10 H 1.48494 * 109.47275 * 89.99679 * 9 7 5 11 11 H 1.48501 * 109.47264 * 209.99886 * 9 7 5 12 12 H 1.48502 * 109.46823 * 329.99597 * 9 7 5 13 13 S 1.65599 * 119.99959 * 93.01590 * 4 3 2 14 14 O 1.42095 * 106.40429 * 336.46232 * 13 4 3 15 15 O 1.42104 * 106.40229 * 203.53566 * 13 4 3 16 16 C 1.76205 * 107.21923 * 90.00153 * 13 4 3 17 17 C 1.38706 * 120.40358 * 89.99552 * 16 13 4 18 18 C 1.38573 * 118.43580 * 180.02562 * 17 16 13 19 19 C 1.38394 * 119.15124 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.63810 * 180.02562 * 19 18 17 21 21 N 1.31948 * 120.72718 * 359.97438 * 19 18 17 22 22 C 1.31909 * 121.71003 * 0.04596 * 21 19 18 23 23 H 4.40634 * 5.51435 * 180.02562 * 4 1 2 24 24 H 1.09008 * 109.47433 * 14.10718 * 3 2 1 25 25 H 1.09001 * 109.46927 * 254.10875 * 3 2 1 26 26 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 27 27 H 1.08000 * 120.78265 * 0.02562 * 17 16 13 28 28 H 1.07997 * 120.42368 * 179.72732 * 18 17 16 29 29 H 1.08003 * 119.60985 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9622 -0.9917 5 6 3.3035 0.5757 -2.2944 6 1 3.7753 1.2446 -2.9990 7 6 2.8689 -0.6756 -2.7093 8 7 1.8712 -1.2658 -2.0860 9 14 3.7001 -1.5219 -4.1523 10 1 4.8272 -2.3522 -3.6569 11 1 2.7171 -2.3881 -4.8514 12 1 4.2168 -0.4981 -5.0959 13 16 3.4803 2.5165 -0.5373 14 8 2.7221 2.7696 0.6374 15 8 3.3814 3.3096 -1.7123 16 6 5.1743 2.5533 -0.0536 17 6 6.1647 2.8263 -0.9856 18 6 7.4836 2.8444 -0.5608 19 6 7.7667 2.5907 0.7699 20 17 9.4145 2.6108 1.3159 21 7 6.7980 2.3346 1.6284 22 6 5.5322 2.3091 1.2581 23 1 -1.0501 0.0000 0.0003 24 1 3.0099 -0.9959 -0.2505 25 1 3.0092 0.2822 0.9884 26 1 1.5672 -2.1400 -2.3762 27 1 5.9138 3.0202 -2.0180 28 1 8.2806 3.0491 -1.2602 29 1 4.7666 2.0954 1.9893 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304147426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:11 Heat of formation + Delta-G solvation = 17.899418 kcal Electronic energy + Delta-G solvation = -19813.375180 eV Core-core repulsion = 16470.620134 eV Total energy + Delta-G solvation = -3342.755046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.012 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.33757 -38.25210 -37.93149 -37.88211 -36.79856 -33.92718 -33.56632 -32.81434 -32.42698 -28.23988 -25.68012 -25.10399 -25.06092 -20.53211 -19.76031 -19.41745 -18.71214 -18.12466 -18.02949 -17.81113 -16.37768 -16.14082 -15.73179 -15.69965 -15.25635 -15.01441 -14.51025 -14.23964 -14.19089 -13.48966 -13.21563 -13.09360 -13.04957 -12.79318 -12.67291 -12.55759 -12.29368 -12.25748 -11.95571 -11.48772 -11.30418 -10.93346 -10.85273 -10.49130 -10.44574 -9.99147 -8.08729 -5.74229 -0.79559 -0.44818 -0.08434 0.51400 1.50430 1.54313 1.61918 1.95203 2.27005 2.43221 2.55902 2.72682 2.89969 3.16352 3.19924 3.27396 3.67283 3.73769 3.97712 4.04582 4.37729 4.44418 4.49308 4.67834 4.98326 5.16566 5.29633 5.57178 5.70409 6.30122 6.46978 7.06063 7.30807 7.39821 8.88293 Molecular weight = 300.01amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.005771 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.664127 B = 4850.261414 C = 5649.371820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.138 4.138 3 C 0.251 3.749 4 N -0.855 5.855 5 C -0.354 4.354 6 H 0.110 0.890 7 C 0.009 3.991 8 N -0.877 5.877 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.265 1.265 13 S 2.690 3.310 14 O -0.985 6.985 15 O -0.984 6.984 16 C -0.729 4.729 17 C 0.036 3.964 18 C -0.165 4.165 19 C 0.204 3.796 20 Cl -0.008 7.008 21 N -0.507 5.507 22 C 0.208 3.792 23 H 0.227 0.773 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.264 0.736 27 H 0.173 0.827 28 H 0.190 0.810 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.104 4.016 3.728 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.140 4.140 3 C 0.125 3.875 4 N -0.687 5.687 5 C -0.483 4.483 6 H 0.127 0.873 7 C -0.196 4.196 8 N -0.515 5.515 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.220 1.220 12 H -0.189 1.189 13 S 2.780 3.220 14 O -0.975 6.975 15 O -0.974 6.974 16 C -0.816 4.816 17 C 0.009 3.991 18 C -0.186 4.186 19 C 0.040 3.960 20 Cl 0.021 6.979 21 N -0.219 5.219 22 C 0.049 3.951 23 H 0.244 0.756 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.191 0.809 28 H 0.208 0.792 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.886 4.432 4.644 12.638 hybrid contribution 0.380 -0.800 -1.388 1.647 sum 11.266 3.632 3.256 12.277 Atomic orbital electron populations 1.25058 0.96453 1.02715 1.04272 1.23583 0.95347 0.98321 0.96780 1.17943 0.84433 0.95495 0.89585 1.52978 1.74228 1.27378 1.14121 1.19343 1.41490 1.02281 0.85139 0.87268 1.25650 0.95276 0.97784 1.00848 1.70335 1.21490 1.16195 1.43496 0.85437 0.78319 0.78601 0.79033 1.19912 1.22035 1.18899 1.01723 0.74911 0.72951 0.72376 1.93500 1.69072 1.84724 1.50209 1.93463 1.86805 1.68280 1.48840 1.32399 1.28061 1.17208 1.03933 1.21686 0.91214 0.85964 1.00248 1.22277 0.98547 1.02625 0.95140 1.22313 0.88797 0.94193 0.90660 1.98420 1.12515 1.95968 1.90995 1.67174 1.00685 1.15850 1.38239 1.22671 0.92334 0.87214 0.92835 0.75585 0.88633 0.89253 0.92624 0.80913 0.79244 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.55 19.25 74.32 1.43 -10.12 15 2 C -0.14 -6.43 11.20 31.12 0.35 -6.08 15 3 C 0.25 10.90 5.10 84.57 0.43 11.33 15 4 N -0.86 -38.42 2.88 -352.52 -1.02 -39.44 15 5 C -0.35 -17.12 9.36 84.03 0.79 -16.33 15 6 H 0.11 5.16 7.43 -2.91 -0.02 5.14 15 7 C 0.01 0.42 4.86 84.86 0.41 0.83 15 8 N -0.88 -44.62 9.10 21.65 0.20 -44.42 15 9 Si 0.96 38.92 29.63 68.60 2.03 40.95 15 10 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 11 H -0.29 -12.18 7.11 99.48 0.71 -11.48 15 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 13 S 2.69 108.67 5.61 -56.49 -0.32 108.35 15 14 O -0.98 -41.91 16.32 -128.00 -2.09 -44.00 15 15 O -0.98 -44.20 16.24 -128.00 -2.08 -46.28 15 16 C -0.73 -23.61 5.99 22.36 0.13 -23.48 15 17 C 0.04 0.99 9.65 22.46 0.22 1.20 15 18 C -0.16 -3.76 9.88 22.39 0.22 -3.54 15 19 C 0.20 5.24 7.27 84.71 0.62 5.85 15 20 Cl -0.01 -0.16 29.11 -2.72 -0.08 -0.24 15 21 N -0.51 -14.98 10.34 -186.69 -1.93 -16.91 15 22 C 0.21 6.30 10.68 84.66 0.90 7.21 15 23 H 0.23 7.85 7.80 -4.41 -0.03 7.82 15 24 H 0.10 4.31 6.52 -2.38 -0.02 4.30 15 25 H 0.09 3.23 7.68 -2.39 -0.02 3.21 15 26 H 0.26 12.98 8.31 -92.71 -0.77 12.21 15 27 H 0.17 4.35 7.71 -2.91 -0.02 4.33 15 28 H 0.19 2.79 8.06 -2.91 -0.02 2.77 15 29 H 0.19 5.13 7.63 -2.91 -0.02 5.11 15 Total: -1.00 -62.81 294.92 1.41 -61.40 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.19 Total: 13.72 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 5.50 Total: -33.13 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -2.75 Total: -100.77 kcal Atomic # 8 Polarization: -86.10 SS G_CDS: -4.17 Total: -90.27 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: 108.67 SS G_CDS: -0.32 Total: 108.35 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -62.81 1.41 -61.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304147426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.295 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds