Wall clock time and date at job start Tue Mar 31 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46664 * 2 1 4 4 C 1.53003 * 109.46840 * 240.00348 * 2 1 3 5 5 N 1.46491 * 109.47489 * 64.99883 * 4 2 1 6 6 C 1.34775 * 119.99983 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00459 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00244 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47224 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47424 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99648 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00600 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99740 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00319 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.46918 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46986 * 119.99841 * 15 13 11 18 18 H 1.48500 * 109.46876 * 239.99688 * 15 13 11 19 19 C 1.52991 * 109.47032 * 120.00083 * 2 1 3 20 20 N 1.46901 * 109.47388 * 296.73157 * 19 2 1 21 21 C 1.47019 * 110.99715 * 170.45813 * 20 19 2 22 22 C 1.53102 * 109.25259 * 182.35351 * 21 20 19 23 23 O 1.43022 * 109.29392 * 303.21972 * 22 21 20 24 24 C 1.43011 * 113.73623 * 58.64727 * 23 22 21 25 25 C 1.47012 * 111.00059 * 294.14591 * 20 19 2 26 26 H 1.09000 * 109.47296 * 184.93697 * 1 2 3 27 27 H 1.09003 * 109.47011 * 304.93834 * 1 2 3 28 28 H 1.09005 * 109.47397 * 64.93804 * 1 2 3 29 29 H 1.09002 * 109.46509 * 185.00243 * 4 2 1 30 30 H 1.08998 * 109.47000 * 304.99405 * 4 2 1 31 31 H 0.97008 * 119.99923 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99839 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.46860 * 299.99783 * 9 8 6 34 34 H 1.09003 * 109.46703 * 59.99815 * 9 8 6 35 35 H 1.09004 * 109.47411 * 300.00173 * 10 9 8 36 36 H 1.09001 * 109.47690 * 59.99894 * 10 9 8 37 37 H 0.97008 * 120.00062 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47387 * 176.73685 * 19 2 1 39 39 H 1.08996 * 109.47414 * 56.73772 * 19 2 1 40 40 H 1.09000 * 109.46953 * 62.44873 * 21 20 19 41 41 H 1.08996 * 109.54850 * 302.30985 * 21 20 19 42 42 H 1.09001 * 109.50449 * 183.26360 * 22 21 20 43 43 H 1.08996 * 109.50896 * 63.17802 * 22 21 20 44 44 H 1.09006 * 109.50674 * 61.26577 * 24 23 22 45 45 H 1.08998 * 109.50639 * 181.35033 * 24 23 22 46 46 H 1.08997 * 109.50904 * 57.66844 * 25 20 19 47 47 H 1.09002 * 109.50254 * 297.53651 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 1.9963 -0.4131 -3.6659 7 8 2.6287 -1.4453 -3.7796 8 7 1.6402 0.2833 -4.7636 9 6 2.0146 -0.2038 -6.0935 10 6 1.4915 0.7637 -7.1569 11 6 1.8771 0.2630 -8.5250 12 1 2.4388 -0.6539 -8.6259 13 6 1.5120 0.9748 -9.6479 14 7 0.8267 2.0906 -9.5252 15 14 1.9894 0.3537 -11.3438 16 1 2.7511 -0.9139 -11.2102 17 1 0.7632 0.1128 -12.1460 18 1 2.8338 1.3689 -12.0231 19 6 2.0399 -0.7212 1.2492 20 7 1.6158 0.0153 2.4474 21 6 1.8889 -0.7599 3.6664 22 6 1.3793 0.0169 4.8833 23 8 1.9951 1.3075 4.9119 24 6 1.7483 2.0892 3.7401 25 6 2.2625 1.3340 2.5116 26 1 -0.3634 -1.0238 0.0884 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4353 -0.9309 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 1.1481 0.8591 -2.3518 32 1 1.1360 1.1070 -4.6729 33 1 3.1004 -0.2694 -6.1641 34 1 1.5797 -1.1903 -6.2548 35 1 0.4057 0.8290 -7.0862 36 1 1.9259 1.7504 -6.9958 37 1 0.5701 2.5917 -10.3152 38 1 3.1284 -0.7722 1.2205 39 1 1.6297 -1.7306 1.2789 40 1 2.9627 -0.9214 3.7613 41 1 1.3791 -1.7215 3.6089 42 1 1.6313 -0.5269 5.7938 43 1 0.2975 0.1313 4.8153 44 1 0.6772 2.2638 3.6379 45 1 2.2664 3.0445 3.8240 46 1 2.0253 1.9000 1.6108 47 1 3.3423 1.2064 2.5884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343850635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:52 Heat of formation + Delta-G solvation = -87.116966 kcal Electronic energy + Delta-G solvation = -23983.275220 eV Core-core repulsion = 20393.555327 eV Total energy + Delta-G solvation = -3589.719893 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -40.15083 -39.54282 -37.43710 -35.38563 -34.61887 -32.94208 -32.39789 -31.59533 -29.51606 -28.27476 -26.67096 -24.90482 -24.50760 -23.90531 -21.13251 -20.93538 -20.58934 -20.18812 -17.96075 -17.15624 -16.53980 -16.36740 -15.98715 -15.65739 -15.51565 -15.35528 -15.25190 -14.56539 -14.49554 -14.38617 -13.72944 -13.70327 -13.43467 -13.13416 -12.86989 -12.65319 -12.37926 -12.27388 -11.93895 -11.81008 -11.39711 -11.28205 -11.16577 -11.03944 -11.00116 -10.84102 -10.60690 -10.30855 -10.10931 -9.91773 -9.54668 -9.23442 -8.99067 -8.83027 -8.47588 -8.22238 -6.08532 -4.10916 2.98137 3.29094 3.33503 3.36857 3.42399 3.47588 3.62483 4.32432 4.41159 4.45045 4.50001 4.61893 4.67322 4.70876 4.76997 4.83832 4.88605 5.03890 5.14519 5.21982 5.25813 5.28694 5.33211 5.38363 5.42095 5.53568 5.60052 5.71378 5.77040 5.97300 6.10170 6.31822 6.41661 6.48177 6.49077 6.64421 6.69739 6.79612 7.02604 7.26237 7.58518 7.64677 7.91032 8.27346 8.46106 8.94376 9.02775 9.53822 11.03173 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.001916 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.480155 B =14610.290132 C =14921.478336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.146 3.854 5 N -0.752 5.752 6 C 0.698 3.302 7 O -0.599 6.599 8 N -0.739 5.739 9 C 0.140 3.860 10 C 0.012 3.988 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.063 3.937 20 N -0.533 5.533 21 C 0.017 3.983 22 C 0.064 3.936 23 O -0.387 6.387 24 C 0.064 3.936 25 C 0.013 3.987 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -0.844 29.404 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.095 0.905 4 C 0.021 3.979 5 N -0.409 5.409 6 C 0.398 3.602 7 O -0.478 6.478 8 N -0.393 5.393 9 C 0.017 3.983 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.078 0.922 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.065 4.065 20 N -0.258 5.258 21 C -0.111 4.111 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.115 4.115 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.109 0.891 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.759 -1.552 29.290 29.341 hybrid contribution 0.468 0.299 -1.146 1.273 sum -0.291 -1.253 28.144 28.174 Atomic orbital electron populations 1.21716 0.93719 1.02326 1.01664 1.21384 0.97559 1.00020 0.92957 0.90514 1.21054 0.99546 0.94994 0.82355 1.45090 1.62223 1.28858 1.04717 1.16063 0.80094 0.83655 0.80428 1.90884 1.45813 1.25199 1.85945 1.45534 1.59979 1.27639 1.06117 1.21582 0.99314 0.98738 0.78628 1.19331 0.96822 0.94232 0.92135 1.21098 1.35418 1.08801 0.90510 0.92159 1.25003 0.94998 0.94892 0.99483 1.69969 1.38414 1.15383 1.29597 0.86453 0.78270 0.78955 0.83872 1.19570 1.20952 1.20963 1.22082 0.98113 0.97641 0.88713 1.62157 1.58348 1.03273 1.02015 1.22788 0.99983 0.97831 0.90497 1.22660 0.97440 0.83763 0.97453 1.87993 1.74876 1.27756 1.39957 1.22674 1.00813 0.93997 0.83856 1.22865 0.97235 0.91393 1.00008 0.92682 0.91659 0.92921 0.92063 0.91724 0.77267 0.77431 0.92826 0.92814 0.95960 0.95980 0.92935 0.94226 0.90052 0.93894 0.89465 0.88505 0.92197 0.92182 0.88444 0.89147 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.93 37.16 0.33 -0.72 16 2 C -0.10 -0.77 2.32 -90.62 -0.21 -0.98 16 3 H 0.08 0.57 6.36 -51.93 -0.33 0.24 16 4 C 0.15 1.58 5.06 -4.04 -0.02 1.56 16 5 N -0.75 -9.44 5.24 -65.23 -0.34 -9.78 16 6 C 0.70 12.37 8.57 -86.92 -0.74 11.62 16 7 O -0.60 -13.14 16.34 5.29 0.09 -13.05 16 8 N -0.74 -13.24 5.56 -65.23 -0.36 -13.60 16 9 C 0.14 3.06 5.61 -4.05 -0.02 3.04 16 10 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 12 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.06 0.45 4.36 -3.83 -0.02 0.43 16 20 N -0.53 -3.73 4.20 -234.31 -0.98 -4.72 16 21 C 0.02 0.11 5.65 -3.71 -0.02 0.09 16 22 C 0.06 0.40 7.01 37.21 0.26 0.66 16 23 O -0.39 -3.27 10.83 -35.23 -0.38 -3.65 16 24 C 0.06 0.42 7.01 37.21 0.26 0.68 16 25 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 7.85 -51.93 -0.41 0.09 16 28 H 0.05 0.42 7.07 -51.93 -0.37 0.05 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 3.89 7.67 -40.82 -0.31 3.57 16 32 H 0.39 6.01 8.49 -40.82 -0.35 5.66 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 39 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.55 6.30 -51.93 -0.33 0.23 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -33.33 375.82 -9.75 -43.08 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.39 Total: 1.75 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.76 Total: 3.31 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.95 Total: -53.57 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.29 Total: -16.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.33 -9.75 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343850635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.036 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds