Wall clock time and date at job start Tue Mar 31 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46664 * 2 1 4 4 C 1.53003 * 109.46840 * 240.00348 * 2 1 3 5 5 N 1.46491 * 109.47489 * 64.99883 * 4 2 1 6 6 C 1.34775 * 119.99983 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00459 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00244 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47224 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47424 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99648 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00600 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99740 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00319 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.46918 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46986 * 119.99841 * 15 13 11 18 18 H 1.48500 * 109.46876 * 239.99688 * 15 13 11 19 19 C 1.52991 * 109.47032 * 120.00083 * 2 1 3 20 20 N 1.46901 * 109.47388 * 296.73157 * 19 2 1 21 21 C 1.47019 * 110.99715 * 170.45813 * 20 19 2 22 22 C 1.53102 * 109.25259 * 182.35351 * 21 20 19 23 23 O 1.43022 * 109.29392 * 303.21972 * 22 21 20 24 24 C 1.43011 * 113.73623 * 58.64727 * 23 22 21 25 25 C 1.47012 * 111.00059 * 294.14591 * 20 19 2 26 26 H 1.09000 * 109.47296 * 184.93697 * 1 2 3 27 27 H 1.09003 * 109.47011 * 304.93834 * 1 2 3 28 28 H 1.09005 * 109.47397 * 64.93804 * 1 2 3 29 29 H 1.09002 * 109.46509 * 185.00243 * 4 2 1 30 30 H 1.08998 * 109.47000 * 304.99405 * 4 2 1 31 31 H 0.97008 * 119.99923 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99839 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.46860 * 299.99783 * 9 8 6 34 34 H 1.09003 * 109.46703 * 59.99815 * 9 8 6 35 35 H 1.09004 * 109.47411 * 300.00173 * 10 9 8 36 36 H 1.09001 * 109.47690 * 59.99894 * 10 9 8 37 37 H 0.97008 * 120.00062 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47387 * 176.73685 * 19 2 1 39 39 H 1.08996 * 109.47414 * 56.73772 * 19 2 1 40 40 H 1.09000 * 109.46953 * 62.44873 * 21 20 19 41 41 H 1.08996 * 109.54850 * 302.30985 * 21 20 19 42 42 H 1.09001 * 109.50449 * 183.26360 * 22 21 20 43 43 H 1.08996 * 109.50896 * 63.17802 * 22 21 20 44 44 H 1.09006 * 109.50674 * 61.26577 * 24 23 22 45 45 H 1.08998 * 109.50639 * 181.35033 * 24 23 22 46 46 H 1.08997 * 109.50904 * 57.66844 * 25 20 19 47 47 H 1.09002 * 109.50254 * 297.53651 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 1.9963 -0.4131 -3.6659 7 8 2.6287 -1.4453 -3.7796 8 7 1.6402 0.2833 -4.7636 9 6 2.0146 -0.2038 -6.0935 10 6 1.4915 0.7637 -7.1569 11 6 1.8771 0.2630 -8.5250 12 1 2.4388 -0.6539 -8.6259 13 6 1.5120 0.9748 -9.6479 14 7 0.8267 2.0906 -9.5252 15 14 1.9894 0.3537 -11.3438 16 1 2.7511 -0.9139 -11.2102 17 1 0.7632 0.1128 -12.1460 18 1 2.8338 1.3689 -12.0231 19 6 2.0399 -0.7212 1.2492 20 7 1.6158 0.0153 2.4474 21 6 1.8889 -0.7599 3.6664 22 6 1.3793 0.0169 4.8833 23 8 1.9951 1.3075 4.9119 24 6 1.7483 2.0892 3.7401 25 6 2.2625 1.3340 2.5116 26 1 -0.3634 -1.0238 0.0884 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4353 -0.9309 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 1.1481 0.8591 -2.3518 32 1 1.1360 1.1070 -4.6729 33 1 3.1004 -0.2694 -6.1641 34 1 1.5797 -1.1903 -6.2548 35 1 0.4057 0.8290 -7.0862 36 1 1.9259 1.7504 -6.9958 37 1 0.5701 2.5917 -10.3152 38 1 3.1284 -0.7722 1.2205 39 1 1.6297 -1.7306 1.2789 40 1 2.9627 -0.9214 3.7613 41 1 1.3791 -1.7215 3.6089 42 1 1.6313 -0.5269 5.7938 43 1 0.2975 0.1313 4.8153 44 1 0.6772 2.2638 3.6379 45 1 2.2664 3.0445 3.8240 46 1 2.0253 1.9000 1.6108 47 1 3.3423 1.2064 2.5884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343850635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:50 Heat of formation + Delta-G solvation = -112.054395 kcal Electronic energy + Delta-G solvation = -23984.356588 eV Core-core repulsion = 20393.555327 eV Total energy + Delta-G solvation = -3590.801261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07890 -40.54762 -38.21832 -36.66676 -35.95816 -34.81882 -33.49690 -32.10544 -31.31816 -28.87548 -27.69235 -26.45820 -25.04659 -24.87664 -22.89812 -21.95306 -21.62004 -20.92879 -19.31664 -18.41806 -17.82307 -17.08311 -17.00119 -16.84692 -16.49325 -16.28700 -15.99777 -15.91152 -15.57973 -15.42415 -15.11557 -14.81662 -14.62233 -14.26699 -14.01754 -13.59512 -13.41275 -13.19536 -13.00786 -12.92972 -12.51554 -12.50105 -12.30604 -12.24226 -12.05442 -11.95535 -11.68391 -11.59870 -11.50456 -11.40278 -11.18905 -10.63666 -10.60533 -10.33264 -9.69705 -9.38595 -8.23647 -6.33638 1.41557 1.42466 1.55612 1.76791 2.18082 2.41758 2.72862 2.98373 3.11208 3.41450 3.76461 3.88843 3.93165 4.01376 4.06617 4.22023 4.29172 4.35740 4.44756 4.48575 4.52655 4.56296 4.64727 4.73651 4.76124 4.82330 4.85349 4.87513 4.90812 4.95241 5.04664 5.12170 5.26849 5.32962 5.45811 5.52261 5.55328 5.60511 5.79908 5.94354 5.96020 6.06574 6.18184 6.20165 6.79754 7.14536 7.35693 7.61436 8.88418 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.001916 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.480155 B =14610.290132 C =14921.478336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 H 0.086 0.914 4 C 0.146 3.854 5 N -0.730 5.730 6 C 0.697 3.303 7 O -0.642 6.642 8 N -0.734 5.734 9 C 0.160 3.840 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.006 3.994 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.066 3.934 20 N -0.535 5.535 21 C 0.017 3.983 22 C 0.062 3.938 23 O -0.409 6.409 24 C 0.062 3.938 25 C 0.014 3.986 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.410 0.590 32 H 0.407 0.593 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -0.711 30.011 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.104 4.104 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.387 5.387 6 C 0.396 3.604 7 O -0.525 6.525 8 N -0.388 5.388 9 C 0.036 3.964 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.063 4.063 20 N -0.260 5.260 21 C -0.111 4.111 22 C -0.015 4.015 23 O -0.328 6.328 24 C -0.015 4.015 25 C -0.114 4.114 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.242 0.758 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.080 -1.379 29.952 30.003 hybrid contribution 0.541 0.271 -1.251 1.390 sum -0.539 -1.108 28.701 28.727 Atomic orbital electron populations 1.21672 0.93308 1.02162 1.01799 1.21248 0.97618 1.00042 0.91519 0.89602 1.21172 0.99138 0.94920 0.82672 1.44923 1.61072 1.29222 1.03451 1.16182 0.79729 0.83037 0.81428 1.90857 1.47760 1.27132 1.86713 1.45214 1.60313 1.28280 1.05037 1.21062 0.98240 0.97324 0.79773 1.19133 0.95802 0.94140 0.92330 1.21498 1.35720 1.09026 0.92153 0.92336 1.25871 0.94808 0.95016 1.03537 1.70065 1.39173 1.16400 1.30940 0.85388 0.78172 0.78571 0.78861 1.19017 1.20210 1.20224 1.22025 0.97851 0.97791 0.88603 1.62176 1.58279 1.03442 1.02102 1.22825 0.99687 0.98317 0.90244 1.22783 0.97468 0.83164 0.98051 1.87964 1.75345 1.28691 1.40818 1.22771 1.01153 0.94267 0.83281 1.22881 0.96649 0.91417 1.00483 0.93096 0.91120 0.93052 0.92900 0.92564 0.75313 0.75760 0.93925 0.93916 0.97226 0.97239 0.92556 0.94649 0.89720 0.94640 0.88307 0.87124 0.91940 0.91884 0.87366 0.88370 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.93 71.98 0.64 -1.11 16 2 C -0.09 -1.15 2.32 -10.80 -0.03 -1.18 16 3 H 0.09 1.06 6.36 -2.39 -0.02 1.04 16 4 C 0.15 2.98 5.06 86.38 0.44 3.42 16 5 N -0.73 -17.30 5.24 -478.55 -2.51 -19.81 16 6 C 0.70 24.25 8.57 179.05 1.53 25.78 16 7 O -0.64 -28.19 16.34 -3.98 -0.07 -28.26 16 8 N -0.73 -25.92 5.56 -478.54 -2.66 -28.58 16 9 C 0.16 7.06 5.61 86.38 0.48 7.54 16 10 C 0.02 1.19 5.09 29.84 0.15 1.34 16 11 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.01 0.36 5.46 84.65 0.46 0.82 16 14 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 15 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 C 0.07 0.85 4.36 86.30 0.38 1.22 16 20 N -0.53 -6.65 4.20 -895.22 -3.76 -10.41 16 21 C 0.02 0.20 5.65 86.31 0.49 0.68 16 22 C 0.06 0.69 7.01 72.02 0.50 1.20 16 23 O -0.41 -6.45 10.83 -148.98 -1.61 -8.06 16 24 C 0.06 0.73 7.01 72.01 0.50 1.24 16 25 C 0.01 0.17 5.44 86.31 0.47 0.63 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.90 7.85 -2.39 -0.02 0.88 16 28 H 0.05 0.70 7.07 -2.38 -0.02 0.68 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.41 7.21 7.67 -92.70 -0.71 6.50 16 32 H 0.41 12.05 8.49 -92.70 -0.79 11.26 16 33 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 38 H 0.04 0.50 8.12 -2.38 -0.02 0.48 16 39 H 0.08 1.05 8.05 -2.39 -0.02 1.03 16 40 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 1.00 6.30 -2.39 -0.02 0.99 16 47 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -70.73 375.82 -2.58 -73.31 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.55 Total: 18.80 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.26 Total: 11.16 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -8.64 Total: -112.74 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.68 Total: -36.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.73 -2.58 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343850635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.745 kcal (2) G-P(sol) polarization free energy of solvation -70.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds