Wall clock time and date at job start Tue Mar 31 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 110.99897 * 2 1 4 4 C 1.53034 * 109.51345 * 174.16738 * 3 2 1 5 5 C 1.53099 * 109.29509 * 59.18740 * 4 3 2 6 6 O 1.42902 * 109.57562 * 62.26828 * 5 4 3 7 7 C 1.52993 * 109.52781 * 182.43453 * 5 4 3 8 8 N 1.46498 * 109.47462 * 304.67567 * 7 5 4 9 9 C 1.34772 * 120.00116 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00343 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.46492 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47206 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46827 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46924 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99489 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47244 * 59.99975 * 19 17 15 21 21 H 1.48503 * 109.46759 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47247 * 299.99958 * 19 17 15 23 23 C 1.53126 * 109.15071 * 302.33888 * 5 4 3 24 24 C 1.46854 * 110.99958 * 235.79138 * 2 1 3 25 25 H 1.09005 * 109.46873 * 60.00145 * 1 2 3 26 26 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47576 * 299.99893 * 1 2 3 28 28 H 1.09002 * 109.46481 * 294.17890 * 3 2 1 29 29 H 1.08994 * 109.46283 * 54.15743 * 3 2 1 30 30 H 1.09007 * 109.50453 * 179.12106 * 4 3 2 31 31 H 1.09009 * 109.50412 * 299.23146 * 4 3 2 32 32 H 0.96698 * 113.99289 * 60.29531 * 6 5 4 33 33 H 1.09010 * 109.47064 * 64.68133 * 7 5 4 34 34 H 1.08999 * 109.47221 * 184.67320 * 7 5 4 35 35 H 0.97002 * 119.99413 * 0.02562 * 8 7 5 36 36 H 0.97007 * 119.99310 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47138 * 300.00234 * 12 11 9 38 38 H 1.09001 * 109.47133 * 60.00028 * 12 11 9 39 39 H 1.09001 * 109.46747 * 300.00223 * 13 12 11 40 40 H 1.09001 * 109.46827 * 60.00116 * 13 12 11 41 41 H 1.09000 * 109.46969 * 299.99762 * 14 13 12 42 42 H 1.09001 * 109.47500 * 60.00310 * 14 13 12 43 43 H 0.97002 * 119.99602 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.50076 * 297.71308 * 23 5 4 45 45 H 1.09000 * 109.50123 * 177.59308 * 23 5 4 46 46 H 1.08993 * 109.46229 * 305.85774 * 24 2 1 47 47 H 1.09008 * 109.45803 * 65.83386 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 0.1466 5 6 4.1188 0.5371 -1.0144 6 8 3.8183 1.1901 -2.2495 7 6 5.6361 0.4451 -0.8406 8 7 6.1959 1.7930 -0.7148 9 6 7.5233 1.9589 -0.5512 10 8 8.2564 0.9898 -0.5084 11 7 8.0383 3.1990 -0.4349 12 6 9.4812 3.3793 -0.2576 13 6 9.7997 4.8723 -0.1537 14 6 11.3068 5.0605 0.0308 15 6 11.6204 6.5310 0.1338 16 1 10.8244 7.2583 0.0733 17 6 12.9236 6.9476 0.3043 18 7 13.8929 6.0618 0.3775 19 14 13.3123 8.7703 0.4313 20 1 12.5953 9.3495 1.5956 21 1 14.7751 8.9531 0.6105 22 1 12.8756 9.4573 -0.8107 23 6 3.5181 -0.8714 -1.0209 24 6 1.9952 -0.7708 -1.1338 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7324 1.8609 -0.9376 29 1 1.5636 1.9256 0.8331 30 1 3.9100 2.3510 0.1309 31 1 3.7813 0.8565 1.0905 32 1 4.1692 2.0888 -2.3146 33 1 5.8648 -0.1287 0.0577 34 1 6.0719 -0.0498 -1.7084 35 1 5.6109 2.5661 -0.7485 36 1 7.4534 3.9721 -0.4694 37 1 9.8011 2.8748 0.6541 38 1 10.0082 2.9544 -1.1120 39 1 9.4798 5.3763 -1.0657 40 1 9.2727 5.2975 0.7005 41 1 11.6269 4.5564 0.9427 42 1 11.8334 4.6353 -0.8236 43 1 14.8097 6.3550 0.4978 44 1 3.7814 -1.3835 -0.0955 45 1 3.9099 -1.4302 -1.8709 46 1 1.5634 -1.7715 -1.1243 47 1 1.7325 -0.2706 -2.0661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355173439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:20 Heat of formation + Delta-G solvation = -94.003652 kcal Electronic energy + Delta-G solvation = -24287.926024 eV Core-core repulsion = 20697.907502 eV Total energy + Delta-G solvation = -3590.018522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.59109 -39.45866 -36.98983 -35.47555 -34.31640 -33.31209 -32.52874 -31.36708 -31.09121 -28.35235 -26.56709 -25.05929 -23.83635 -23.01262 -21.99296 -20.86843 -20.39503 -20.24144 -18.39520 -16.89374 -16.68548 -16.14803 -15.97008 -15.72298 -15.47995 -15.17196 -14.82388 -14.65543 -14.44722 -14.11374 -13.89634 -13.75696 -13.56969 -12.91603 -12.79925 -12.54763 -12.27807 -12.02849 -11.83013 -11.81441 -11.72523 -11.61741 -11.52546 -10.88883 -10.80925 -10.72578 -10.62439 -10.23878 -10.14619 -9.86276 -9.44729 -9.27930 -9.13978 -8.73672 -8.63925 -8.37084 -6.01718 -4.04996 2.72288 3.31687 3.32758 3.36586 3.38341 3.47768 3.77640 4.18005 4.21717 4.30852 4.38844 4.45049 4.69866 4.85698 4.91310 5.04482 5.05964 5.18271 5.20422 5.33847 5.37292 5.38846 5.44054 5.45386 5.60294 5.62068 5.65907 5.71719 5.80639 5.83970 6.17233 6.32120 6.50703 6.61506 6.62063 6.64120 6.75851 7.00171 7.01592 7.17968 7.63375 7.76436 7.96914 8.08788 8.37680 8.70961 9.01405 9.59031 11.09470 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.036004 B = 0.002055 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.506731 B =13622.661583 C =14094.713362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.142 4.142 5 C 0.123 3.877 6 O -0.553 6.553 7 C 0.116 3.884 8 N -0.752 5.752 9 C 0.701 3.299 10 O -0.590 6.590 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.100 4.100 24 C 0.059 3.941 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.374 0.626 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.390 0.610 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.194 -11.648 -2.358 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.180 4.180 5 C 0.082 3.918 6 O -0.359 6.359 7 C -0.009 4.009 8 N -0.411 5.411 9 C 0.400 3.600 10 O -0.468 6.468 11 N -0.395 5.395 12 C 0.011 3.989 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.138 4.138 24 C -0.069 4.069 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.222 0.778 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.224 0.776 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -27.415 -13.380 -1.985 30.571 hybrid contribution -0.198 2.722 -0.521 2.779 sum -27.613 -10.657 -2.506 29.704 Atomic orbital electron populations 1.22338 0.87182 1.02104 1.00657 1.61963 1.07676 1.13805 1.43501 1.22001 0.94717 0.89340 1.00822 1.22262 0.95406 1.00601 0.99755 1.21520 0.92015 0.94123 0.84140 1.86572 1.79862 1.32378 1.37078 1.21856 0.92171 0.83812 1.03104 1.45096 1.06569 1.08653 1.80735 1.15990 0.81739 0.84218 0.78029 1.90932 1.58721 1.39106 1.58026 1.45386 1.10200 1.05788 1.78154 1.21523 0.77090 0.98710 1.01530 1.21891 1.01647 0.91508 1.00759 1.19028 0.87829 0.96978 0.97556 1.21161 0.92645 0.92163 1.50180 0.92721 1.25033 0.96497 0.97626 0.95336 1.69956 1.00041 1.33427 1.49784 0.86637 0.77182 0.85463 0.78564 1.20267 1.21270 1.20267 1.21536 0.94921 0.93701 1.03649 1.22013 0.94707 0.98218 0.91969 0.95675 0.91336 0.91347 0.94142 0.90725 0.91146 0.89607 0.77833 0.90652 0.90702 0.77612 0.77397 0.91922 0.91934 0.92784 0.92779 0.96230 0.96228 0.92865 0.89351 0.90204 0.90634 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.59 60.06 0.58 0.72 16 2 N -0.54 -3.96 4.91 -242.95 -1.19 -5.16 16 3 C 0.06 0.40 5.33 -3.84 -0.02 0.38 16 4 C -0.14 -0.93 4.81 -26.66 -0.13 -1.06 16 5 C 0.12 0.90 0.72 -90.51 -0.07 0.84 16 6 O -0.55 -4.29 11.85 -35.23 -0.42 -4.71 16 7 C 0.12 1.10 4.85 -4.05 -0.02 1.08 16 8 N -0.75 -7.48 5.05 -65.23 -0.33 -7.81 16 9 C 0.70 10.42 8.57 -86.92 -0.74 9.68 16 10 O -0.59 -11.56 16.34 5.29 0.09 -11.48 16 11 N -0.74 -10.44 5.56 -65.23 -0.36 -10.80 16 12 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 13 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.10 -0.71 5.11 -26.65 -0.14 -0.85 16 24 C 0.06 0.42 5.33 -3.83 -0.02 0.40 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.29 7.76 -51.93 -0.40 -0.11 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.07 0.38 6.68 -51.93 -0.35 0.03 16 31 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.37 1.99 8.19 45.56 0.37 2.37 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.39 2.64 6.42 -40.82 -0.26 2.37 16 36 H 0.39 4.28 8.49 -40.82 -0.35 3.93 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 47 H 0.04 0.36 7.76 -51.92 -0.40 -0.04 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -34.04 374.13 -9.82 -43.86 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.69 Total: 1.91 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.27 Total: -1.82 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -1.15 Total: -49.82 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.33 Total: -16.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.04 -9.82 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355173439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.145 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds