Wall clock time and date at job start Tue Mar 31 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 110.99897 * 2 1 4 4 C 1.53034 * 109.51345 * 174.16738 * 3 2 1 5 5 C 1.53099 * 109.29509 * 59.18740 * 4 3 2 6 6 O 1.42902 * 109.57562 * 62.26828 * 5 4 3 7 7 C 1.52993 * 109.52781 * 182.43453 * 5 4 3 8 8 N 1.46498 * 109.47462 * 304.67567 * 7 5 4 9 9 C 1.34772 * 120.00116 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00343 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.46492 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47206 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46827 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46924 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99489 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47244 * 59.99975 * 19 17 15 21 21 H 1.48503 * 109.46759 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47247 * 299.99958 * 19 17 15 23 23 C 1.53126 * 109.15071 * 302.33888 * 5 4 3 24 24 C 1.46854 * 110.99958 * 235.79138 * 2 1 3 25 25 H 1.09005 * 109.46873 * 60.00145 * 1 2 3 26 26 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47576 * 299.99893 * 1 2 3 28 28 H 1.09002 * 109.46481 * 294.17890 * 3 2 1 29 29 H 1.08994 * 109.46283 * 54.15743 * 3 2 1 30 30 H 1.09007 * 109.50453 * 179.12106 * 4 3 2 31 31 H 1.09009 * 109.50412 * 299.23146 * 4 3 2 32 32 H 0.96698 * 113.99289 * 60.29531 * 6 5 4 33 33 H 1.09010 * 109.47064 * 64.68133 * 7 5 4 34 34 H 1.08999 * 109.47221 * 184.67320 * 7 5 4 35 35 H 0.97002 * 119.99413 * 0.02562 * 8 7 5 36 36 H 0.97007 * 119.99310 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47138 * 300.00234 * 12 11 9 38 38 H 1.09001 * 109.47133 * 60.00028 * 12 11 9 39 39 H 1.09001 * 109.46747 * 300.00223 * 13 12 11 40 40 H 1.09001 * 109.46827 * 60.00116 * 13 12 11 41 41 H 1.09000 * 109.46969 * 299.99762 * 14 13 12 42 42 H 1.09001 * 109.47500 * 60.00310 * 14 13 12 43 43 H 0.97002 * 119.99602 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.50076 * 297.71308 * 23 5 4 45 45 H 1.09000 * 109.50123 * 177.59308 * 23 5 4 46 46 H 1.08993 * 109.46229 * 305.85774 * 24 2 1 47 47 H 1.09008 * 109.45803 * 65.83386 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 0.1466 5 6 4.1188 0.5371 -1.0144 6 8 3.8183 1.1901 -2.2495 7 6 5.6361 0.4451 -0.8406 8 7 6.1959 1.7930 -0.7148 9 6 7.5233 1.9589 -0.5512 10 8 8.2564 0.9898 -0.5084 11 7 8.0383 3.1990 -0.4349 12 6 9.4812 3.3793 -0.2576 13 6 9.7997 4.8723 -0.1537 14 6 11.3068 5.0605 0.0308 15 6 11.6204 6.5310 0.1338 16 1 10.8244 7.2583 0.0733 17 6 12.9236 6.9476 0.3043 18 7 13.8929 6.0618 0.3775 19 14 13.3123 8.7703 0.4313 20 1 12.5953 9.3495 1.5956 21 1 14.7751 8.9531 0.6105 22 1 12.8756 9.4573 -0.8107 23 6 3.5181 -0.8714 -1.0209 24 6 1.9952 -0.7708 -1.1338 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7324 1.8609 -0.9376 29 1 1.5636 1.9256 0.8331 30 1 3.9100 2.3510 0.1309 31 1 3.7813 0.8565 1.0905 32 1 4.1692 2.0888 -2.3146 33 1 5.8648 -0.1287 0.0577 34 1 6.0719 -0.0498 -1.7084 35 1 5.6109 2.5661 -0.7485 36 1 7.4534 3.9721 -0.4694 37 1 9.8011 2.8748 0.6541 38 1 10.0082 2.9544 -1.1120 39 1 9.4798 5.3763 -1.0657 40 1 9.2727 5.2975 0.7005 41 1 11.6269 4.5564 0.9427 42 1 11.8334 4.6353 -0.8236 43 1 14.8097 6.3550 0.4978 44 1 3.7814 -1.3835 -0.0955 45 1 3.9099 -1.4302 -1.8709 46 1 1.5634 -1.7715 -1.1243 47 1 1.7325 -0.2706 -2.0661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355173439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:16 Heat of formation + Delta-G solvation = -121.635929 kcal Electronic energy + Delta-G solvation = -24289.124250 eV Core-core repulsion = 20697.907502 eV Total energy + Delta-G solvation = -3591.216748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.43646 -40.41797 -37.66507 -36.94028 -35.32225 -35.15344 -33.34701 -32.72129 -31.89033 -29.34056 -28.09636 -25.85507 -24.82268 -24.25997 -22.70380 -22.30072 -21.81411 -20.82032 -19.52510 -18.54178 -17.53619 -17.35445 -16.92442 -16.73597 -16.48435 -16.06754 -15.88728 -15.75865 -15.60187 -15.25875 -14.99281 -14.55787 -14.28385 -14.20907 -13.73355 -13.71274 -13.43363 -13.34198 -13.08902 -12.70453 -12.53921 -12.52271 -12.39240 -12.37065 -12.21798 -12.06968 -11.67352 -11.65051 -11.43192 -11.28907 -11.13323 -10.84201 -10.53515 -10.43592 -9.80488 -9.26869 -8.18020 -6.29586 1.42528 1.45653 1.53383 1.64391 2.12272 2.42993 2.96957 3.15578 3.21074 3.28504 3.51850 3.68665 3.79215 4.17322 4.18013 4.24821 4.33227 4.36670 4.46732 4.55275 4.57643 4.61685 4.65753 4.70487 4.79802 4.89485 4.95113 4.97476 5.01368 5.03292 5.06567 5.12386 5.18577 5.28008 5.38909 5.47285 5.55155 5.72764 5.85691 5.94591 6.11625 6.13047 6.23759 6.69712 6.87628 7.07489 7.39853 7.55546 8.93792 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.036004 B = 0.002055 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.506731 B =13622.661583 C =14094.713362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.060 3.940 4 C -0.139 4.139 5 C 0.135 3.865 6 O -0.562 6.562 7 C 0.118 3.882 8 N -0.728 5.728 9 C 0.698 3.302 10 O -0.640 6.640 11 N -0.728 5.728 12 C 0.149 3.851 13 C -0.100 4.100 14 C 0.022 3.978 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.103 4.103 24 C 0.063 3.937 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.413 0.587 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.069 0.931 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.404 -10.014 -2.291 32.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.068 4.068 4 C -0.177 4.177 5 C 0.094 3.906 6 O -0.369 6.369 7 C -0.006 4.006 8 N -0.386 5.386 9 C 0.398 3.602 10 O -0.522 6.522 11 N -0.384 5.384 12 C 0.024 3.976 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.141 4.141 24 C -0.065 4.065 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.249 0.751 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -29.712 -11.701 -1.928 31.991 hybrid contribution 0.453 2.154 -0.555 2.270 sum -29.260 -9.547 -2.484 30.878 Atomic orbital electron populations 1.22377 0.86386 1.02643 1.00903 1.61998 1.08533 1.14100 1.43410 1.22010 0.94661 0.89201 1.00907 1.22242 0.95444 1.01166 0.98817 1.21381 0.90134 0.94556 0.84522 1.86570 1.79913 1.33293 1.37167 1.21887 0.93610 0.83111 1.02030 1.44827 1.04980 1.09842 1.78969 1.16150 0.82837 0.83518 0.77734 1.90906 1.60372 1.40700 1.60192 1.44992 1.08903 1.06546 1.77924 1.21074 0.79149 0.97252 1.00080 1.21584 0.97391 0.92710 1.02072 1.18952 0.91809 0.95755 0.95027 1.21654 0.93215 0.93423 1.49588 0.91432 1.26041 0.96470 1.02818 0.94922 1.70110 1.00469 1.35935 1.50990 0.85461 0.76874 0.79227 0.79224 1.19000 1.21280 1.19020 1.21573 0.95147 0.93660 1.03761 1.21970 0.94501 0.98581 0.91465 0.95780 0.90729 0.90703 0.94533 0.89974 0.89606 0.90225 0.76571 0.91412 0.92323 0.75284 0.75075 0.93556 0.93634 0.91277 0.91238 0.98968 0.98993 0.92858 0.89128 0.90330 0.89818 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.59 127.69 1.22 1.48 16 2 N -0.56 -7.20 4.91 -922.57 -4.53 -11.73 16 3 C 0.06 0.69 5.33 86.32 0.46 1.15 16 4 C -0.14 -1.53 4.81 30.64 0.15 -1.38 16 5 C 0.14 1.78 0.72 -10.72 -0.01 1.78 16 6 O -0.56 -7.71 11.85 -148.98 -1.77 -9.47 16 7 C 0.12 2.15 4.85 86.38 0.42 2.57 16 8 N -0.73 -13.22 5.05 -478.54 -2.42 -15.63 16 9 C 0.70 20.10 8.57 179.05 1.53 21.63 16 10 O -0.64 -25.33 16.34 -4.00 -0.07 -25.39 16 11 N -0.73 -19.36 5.56 -478.53 -2.66 -22.02 16 12 C 0.15 5.26 5.67 86.38 0.49 5.75 16 13 C -0.10 -3.76 5.27 30.60 0.16 -3.60 16 14 C 0.02 1.16 4.97 29.85 0.15 1.30 16 15 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 18 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 19 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.10 -1.38 5.11 30.65 0.16 -1.22 16 24 C 0.06 0.82 5.33 86.32 0.46 1.28 16 25 H 0.02 0.25 8.14 -2.38 -0.02 0.23 16 26 H 0.07 0.65 8.09 -2.38 -0.02 0.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.04 0.46 7.76 -2.39 -0.02 0.44 16 29 H 0.08 0.83 8.12 -2.39 -0.02 0.82 16 30 H 0.09 0.66 6.68 -2.38 -0.02 0.64 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.39 3.16 8.19 -74.06 -0.61 2.55 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.41 4.33 6.42 -92.71 -0.59 3.74 16 36 H 0.41 7.75 8.49 -92.70 -0.79 6.97 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 47 H 0.03 0.50 7.76 -2.38 -0.02 0.48 16 Total: -1.00 -74.42 374.13 -4.26 -78.68 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -1.02 Total: 15.63 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.89 Total: 1.20 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -9.32 Total: -106.21 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.83 Total: -34.86 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -74.42 -4.26 -78.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355173439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.956 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds