Wall clock time and date at job start Tue Mar 31 2020 03:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34067 * 125.44179 * 2 1 4 4 C 1.35005 * 109.41403 * 180.13714 * 3 2 1 5 5 C 1.40773 * 126.15044 * 179.86687 * 4 3 2 6 6 N 1.31441 * 120.00347 * 359.68540 * 5 4 3 7 7 N 1.40101 * 120.00594 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00274 * 180.02562 * 7 6 5 9 9 O 1.22123 * 120.00114 * 359.97438 * 8 7 6 10 10 C 1.39571 * 119.99898 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00333 * 353.66917 * 10 8 7 12 12 C 1.40026 * 119.99860 * 173.66047 * 10 8 7 13 13 N 1.30724 * 119.99878 * 6.32332 * 12 10 8 14 14 Si 1.86796 * 120.00039 * 186.31682 * 12 10 8 15 15 H 1.48507 * 109.46723 * 94.98833 * 14 12 10 16 16 H 1.48497 * 109.47273 * 214.98838 * 14 12 10 17 17 H 1.48499 * 109.47330 * 334.99307 * 14 12 10 18 18 C 1.39393 * 107.69795 * 359.59844 * 4 3 2 19 19 C 1.36113 * 125.43786 * 179.68845 * 2 1 3 20 20 Br 1.89109 * 126.36622 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47339 * 270.30889 * 1 2 3 22 22 H 1.09007 * 109.46516 * 30.31268 * 1 2 3 23 23 H 1.09002 * 109.47104 * 150.30825 * 1 2 3 24 24 H 1.07998 * 119.99925 * 179.97438 * 5 4 3 25 25 H 0.96999 * 119.99470 * 359.97438 * 7 6 5 26 26 H 0.96993 * 119.99853 * 179.97438 * 13 12 10 27 27 H 1.08003 * 126.75229 * 180.22491 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2845 1.0922 0.0000 4 6 3.5820 0.7195 -0.0030 5 6 4.6940 1.5827 -0.0067 6 7 4.5152 2.8849 -0.0135 7 7 5.6219 3.7441 -0.0177 8 6 5.4384 5.0792 -0.0242 9 8 4.3076 5.5402 -0.0270 10 6 6.5410 5.9351 -0.0278 11 1 7.5375 5.5324 0.0778 12 6 6.3550 7.3158 -0.1685 13 7 5.1471 7.8155 -0.1722 14 14 7.8329 8.4435 -0.3506 15 1 8.0931 8.6896 -1.7919 16 1 7.5577 9.7342 0.3302 17 1 9.0231 7.8031 0.2648 18 6 3.6227 -0.6738 0.0042 19 6 2.2963 -1.1090 0.0060 20 35 1.7057 -2.9055 0.0151 21 1 -0.3634 0.0055 1.0276 22 1 -0.3632 0.8873 -0.5187 23 1 -0.3633 -0.8927 -0.5090 24 1 5.6941 1.1750 -0.0085 25 1 6.5201 3.3779 -0.0151 26 1 5.0183 8.7720 -0.2692 27 1 4.5065 -1.2945 0.0075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408839644.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:43 Heat of formation + Delta-G solvation = 15.658292 kcal Electronic energy + Delta-G solvation = -15465.475694 eV Core-core repulsion = 12465.442909 eV Total energy + Delta-G solvation = -3000.032785 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 299.990 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.42471 -37.78178 -35.48956 -33.76471 -32.87778 -32.29801 -30.59116 -30.28139 -27.46998 -25.89450 -22.53776 -21.61446 -20.36870 -19.58650 -17.89674 -16.34800 -16.26925 -15.99958 -15.57110 -14.62419 -13.97320 -13.46486 -13.41718 -13.03527 -13.00068 -12.81015 -12.66763 -12.09227 -11.58272 -11.54612 -11.48473 -11.03979 -10.73413 -10.43282 -10.34359 -9.80326 -9.48464 -9.10415 -8.64676 -7.86362 -7.21935 -6.49402 -5.06140 1.08852 1.55384 2.05553 2.95039 2.98962 3.06425 3.10984 3.21235 3.57920 4.00592 4.34877 4.62879 4.92564 5.09113 5.36592 5.41347 5.48146 5.58038 5.65956 5.82932 6.06288 6.30844 6.35477 7.10181 7.13024 7.73553 7.87521 8.44092 8.66782 9.16283 10.29173 10.53258 Molecular weight = 299.99amu Principal moments of inertia in cm(-1) A = 0.061794 B = 0.002692 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.007843 B =10397.748830 C =10830.679991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 O -0.135 6.135 4 C 0.075 3.925 5 C 0.019 3.981 6 N -0.160 5.160 7 N -0.577 5.577 8 C 0.552 3.448 9 O -0.551 6.551 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.739 5.739 14 Si 0.920 3.080 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.173 4.173 19 C -0.180 4.180 20 Br -0.023 7.023 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.372 0.628 26 H 0.276 0.724 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -19.975 0.050 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 O -0.028 6.028 4 C 0.022 3.978 5 C -0.186 4.186 6 N 0.025 4.975 7 N -0.324 5.324 8 C 0.362 3.638 9 O -0.431 6.431 10 C -0.569 4.569 11 H 0.091 0.909 12 C -0.138 4.138 13 N -0.366 5.366 14 Si 0.743 3.257 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.198 4.198 19 C -0.261 4.261 20 Br 0.061 6.939 21 H 0.106 0.894 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.155 0.845 25 H 0.208 0.792 26 H 0.087 0.913 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.223 -18.876 0.041 19.875 hybrid contribution 2.216 -0.007 -0.089 2.218 sum -4.007 -18.883 -0.048 19.304 Atomic orbital electron populations 1.20437 0.84558 1.04593 1.04119 1.22692 0.94226 0.82969 1.03529 1.84318 1.16466 1.32925 1.69087 1.19333 0.80989 0.91781 1.05706 1.21814 0.94604 0.90551 1.11658 1.75358 1.17922 1.02540 1.01640 1.48295 1.02782 1.06672 1.74662 1.16599 0.91342 0.76947 0.78897 1.90789 1.25349 1.73006 1.53925 1.19500 0.93581 0.91563 1.52223 0.90867 1.25783 0.96910 0.98559 0.92539 1.70076 1.22120 1.13621 1.30780 0.86150 0.81171 0.79163 0.79170 1.19400 1.20030 1.18535 1.21869 0.96430 0.92372 1.09120 1.21593 0.95503 0.91203 1.17759 1.96579 1.89331 1.09846 1.98182 0.89426 0.89707 0.89039 0.84494 0.79176 0.91315 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.21 36.01 0.37 -0.44 15 2 C 0.02 0.32 7.33 -35.07 -0.26 0.06 15 3 O -0.14 -2.38 10.63 4.38 0.05 -2.34 15 4 C 0.07 1.23 6.98 -38.19 -0.27 0.96 15 5 C 0.02 0.32 10.72 -16.76 -0.18 0.14 15 6 N -0.16 -3.64 11.04 30.92 0.34 -3.30 15 7 N -0.58 -13.59 6.26 28.70 0.18 -13.41 15 8 C 0.55 15.92 7.61 -15.76 -0.12 15.80 15 9 O -0.55 -18.44 15.19 4.81 0.07 -18.37 15 10 C -0.53 -14.44 9.19 -38.41 -0.35 -14.80 15 11 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 12 C 0.09 2.30 5.49 -17.35 -0.10 2.21 15 13 N -0.74 -21.38 11.71 55.55 0.65 -20.73 15 14 Si 0.92 18.95 29.56 -169.99 -5.03 13.92 15 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 18 C -0.17 -2.32 10.92 -38.64 -0.42 -2.74 15 19 C -0.18 -2.36 6.56 -39.84 -0.26 -2.63 15 20 Br -0.02 -0.25 33.47 -68.01 -2.28 -2.52 15 21 H 0.09 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.09 0.75 7.74 -51.93 -0.40 0.35 15 24 H 0.14 1.81 8.04 -52.49 -0.42 1.39 15 25 H 0.37 7.13 8.62 -182.60 -1.57 5.56 15 26 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15 27 H 0.16 1.70 8.06 -52.48 -0.42 1.28 15 LS Contribution 279.07 15.07 4.21 4.21 Total: -1.00 -34.85 279.07 -6.60 -41.45 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.21 Total: 2.50 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.59 Total: -1.42 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 1.17 Total: -37.43 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.12 Total: -20.71 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.28 Total: -2.52 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.85 -6.60 -41.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408839644.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.113 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds