Wall clock time and date at job start Tue Mar 31 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34067 * 125.44179 * 2 1 4 4 C 1.35005 * 109.41403 * 180.13714 * 3 2 1 5 5 C 1.40773 * 126.15044 * 179.86687 * 4 3 2 6 6 N 1.31441 * 120.00347 * 359.68540 * 5 4 3 7 7 N 1.40101 * 120.00594 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00274 * 180.02562 * 7 6 5 9 9 O 1.22123 * 120.00114 * 359.97438 * 8 7 6 10 10 C 1.39571 * 119.99898 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00333 * 353.66917 * 10 8 7 12 12 C 1.40026 * 119.99860 * 173.66047 * 10 8 7 13 13 N 1.30724 * 119.99878 * 6.32332 * 12 10 8 14 14 Si 1.86796 * 120.00039 * 186.31682 * 12 10 8 15 15 H 1.48507 * 109.46723 * 94.98833 * 14 12 10 16 16 H 1.48497 * 109.47273 * 214.98838 * 14 12 10 17 17 H 1.48499 * 109.47330 * 334.99307 * 14 12 10 18 18 C 1.39393 * 107.69795 * 359.59844 * 4 3 2 19 19 C 1.36113 * 125.43786 * 179.68845 * 2 1 3 20 20 Br 1.89109 * 126.36622 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47339 * 270.30889 * 1 2 3 22 22 H 1.09007 * 109.46516 * 30.31268 * 1 2 3 23 23 H 1.09002 * 109.47104 * 150.30825 * 1 2 3 24 24 H 1.07998 * 119.99925 * 179.97438 * 5 4 3 25 25 H 0.96999 * 119.99470 * 359.97438 * 7 6 5 26 26 H 0.96993 * 119.99853 * 179.97438 * 13 12 10 27 27 H 1.08003 * 126.75229 * 180.22491 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2845 1.0922 0.0000 4 6 3.5820 0.7195 -0.0030 5 6 4.6940 1.5827 -0.0067 6 7 4.5152 2.8849 -0.0135 7 7 5.6219 3.7441 -0.0177 8 6 5.4384 5.0792 -0.0242 9 8 4.3076 5.5402 -0.0270 10 6 6.5410 5.9351 -0.0278 11 1 7.5375 5.5324 0.0778 12 6 6.3550 7.3158 -0.1685 13 7 5.1471 7.8155 -0.1722 14 14 7.8329 8.4435 -0.3506 15 1 8.0931 8.6896 -1.7919 16 1 7.5577 9.7342 0.3302 17 1 9.0231 7.8031 0.2648 18 6 3.6227 -0.6738 0.0042 19 6 2.2963 -1.1090 0.0060 20 35 1.7057 -2.9055 0.0151 21 1 -0.3634 0.0055 1.0276 22 1 -0.3632 0.8873 -0.5187 23 1 -0.3633 -0.8927 -0.5090 24 1 5.6941 1.1750 -0.0085 25 1 6.5201 3.3779 -0.0151 26 1 5.0183 8.7720 -0.2692 27 1 4.5065 -1.2945 0.0075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408839644.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:42 Heat of formation + Delta-G solvation = -10.391606 kcal Electronic energy + Delta-G solvation = -15466.605302 eV Core-core repulsion = 12465.442909 eV Total energy + Delta-G solvation = -3001.162393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 299.990 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.61756 -39.68539 -37.20665 -34.88240 -34.79076 -33.83781 -31.98594 -31.33070 -29.19674 -27.37917 -23.88387 -22.80654 -22.12321 -20.97438 -19.65341 -17.92381 -17.74483 -17.48372 -17.10470 -16.03070 -15.52223 -15.24115 -14.79168 -14.36495 -14.07634 -13.99618 -13.87494 -13.28803 -13.24683 -12.98654 -12.76678 -12.68732 -12.54719 -12.01077 -11.29109 -11.22860 -11.04005 -10.65405 -10.06567 -10.04022 -8.72748 -8.47003 -7.15001 -0.19750 0.53234 0.94436 1.39044 1.39893 1.58608 1.83666 1.87327 2.03260 2.30944 2.40965 3.59980 3.60472 3.75882 3.99014 4.21805 4.45790 4.59869 4.60631 4.71731 4.93989 5.11573 5.15941 5.24588 5.77725 5.92402 5.97712 6.63604 6.81771 7.37360 8.36496 8.53813 Molecular weight = 299.99amu Principal moments of inertia in cm(-1) A = 0.061794 B = 0.002692 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.007843 B =10397.748830 C =10830.679991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.032 3.968 3 O -0.171 6.171 4 C 0.009 3.991 5 C 0.081 3.919 6 N -0.254 5.254 7 N -0.586 5.586 8 C 0.540 3.460 9 O -0.620 6.620 10 C -0.557 4.557 11 H 0.100 0.900 12 C 0.028 3.972 13 N -0.798 5.798 14 Si 1.013 2.987 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.242 1.242 18 C -0.122 4.122 19 C -0.199 4.199 20 Br 0.009 6.991 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.181 0.819 25 H 0.389 0.611 26 H 0.283 0.717 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -22.620 -0.001 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.025 4.025 3 O -0.065 6.065 4 C -0.042 4.042 5 C -0.126 4.126 6 N -0.064 5.064 7 N -0.333 5.333 8 C 0.351 3.649 9 O -0.506 6.506 10 C -0.592 4.592 11 H 0.118 0.882 12 C -0.191 4.191 13 N -0.426 5.426 14 Si 0.831 3.169 15 H -0.184 1.184 16 H -0.194 1.194 17 H -0.165 1.165 18 C -0.147 4.147 19 C -0.279 4.279 20 Br 0.092 6.908 21 H 0.124 0.876 22 H 0.104 0.896 23 H 0.132 0.868 24 H 0.197 0.803 25 H 0.228 0.772 26 H 0.093 0.907 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.904 -21.584 -0.005 22.134 hybrid contribution 1.574 0.257 -0.057 1.596 sum -3.330 -21.327 -0.062 21.585 Atomic orbital electron populations 1.20704 0.82112 1.05754 1.05581 1.23595 0.95775 0.82581 1.00583 1.84310 1.17506 1.34939 1.69786 1.19568 0.80680 0.92919 1.11053 1.22559 0.96989 0.89316 1.03698 1.75417 1.17900 1.04555 1.08552 1.47343 1.03827 1.05645 1.76443 1.16992 0.90877 0.78833 0.78228 1.90715 1.27547 1.75103 1.57196 1.20076 0.94369 0.92454 1.52339 0.88217 1.27213 1.00614 1.00350 0.90946 1.70249 1.25616 1.14488 1.32233 0.84783 0.76401 0.76188 0.79543 1.18446 1.19391 1.16470 1.22364 0.97831 0.91090 1.03441 1.21891 0.95383 0.92749 1.17927 1.96624 1.89060 1.06948 1.98125 0.87644 0.89594 0.86814 0.80258 0.77213 0.90723 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 10.21 71.24 0.73 -0.81 15 2 C 0.03 0.83 7.33 25.19 0.18 1.02 15 3 O -0.17 -6.04 10.63 -7.25 -0.08 -6.12 15 4 C 0.01 0.30 6.98 23.17 0.16 0.46 15 5 C 0.08 2.75 10.72 85.37 0.92 3.66 15 6 N -0.25 -12.03 11.04 -56.10 -0.62 -12.65 15 7 N -0.59 -28.80 6.26 -181.15 -1.13 -29.94 15 8 C 0.54 32.87 7.61 84.56 0.64 33.51 15 9 O -0.62 -44.46 15.19 -5.72 -0.09 -44.55 15 10 C -0.56 -31.10 9.19 23.03 0.21 -30.89 15 11 H 0.10 4.80 7.85 -2.91 -0.02 4.77 15 12 C 0.03 1.51 5.49 85.29 0.47 1.98 15 13 N -0.80 -48.44 11.71 21.84 0.26 -48.18 15 14 Si 1.01 38.97 29.56 68.60 2.03 41.00 15 15 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 16 H -0.27 -9.96 7.11 99.48 0.71 -9.26 15 17 H -0.24 -8.44 7.11 99.48 0.71 -7.73 15 18 C -0.12 -2.87 10.92 22.88 0.25 -2.62 15 19 C -0.20 -4.63 6.56 22.10 0.15 -4.49 15 20 Br 0.01 0.15 33.47 -20.37 -0.68 -0.53 15 21 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.09 1.56 8.14 -2.38 -0.02 1.54 15 23 H 0.11 1.53 7.74 -2.39 -0.02 1.51 15 24 H 0.18 4.25 8.04 -2.91 -0.02 4.23 15 25 H 0.39 15.26 8.62 -213.32 -1.84 13.42 15 26 H 0.28 15.25 8.29 -92.71 -0.77 14.48 15 27 H 0.20 3.12 8.06 -2.91 -0.02 3.10 15 Total: -1.00 -83.15 279.07 2.78 -80.37 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.61 Total: 18.79 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 3.71 Total: 1.82 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.50 Total: -90.77 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.16 Total: -50.67 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.68 Total: -0.53 kcal Total: -83.15 2.78 -80.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408839644.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.977 kcal (2) G-P(sol) polarization free energy of solvation -83.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds