Wall clock time and date at job start Tue Mar 31 2020 03:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00001 * 2 1 4 4 C 1.50702 * 109.47111 * 293.94911 * 3 2 1 5 5 H 1.08007 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00241 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00039 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00259 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46866 * 59.99890 * 8 6 4 10 10 H 1.48504 * 109.47464 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47235 * 300.00185 * 8 6 4 12 12 C 1.46906 * 110.99795 * 123.95142 * 2 1 3 13 13 C 1.52997 * 109.47040 * 66.04349 * 12 2 1 14 14 H 1.08995 * 109.47352 * 304.99776 * 13 12 2 15 15 O 1.42897 * 109.47072 * 65.00367 * 13 12 2 16 16 C 1.53007 * 109.46961 * 184.99991 * 13 12 2 17 17 N 1.46898 * 109.46873 * 180.02562 * 16 13 12 18 18 C 1.46903 * 110.99849 * 179.97438 * 17 16 13 19 19 C 1.50694 * 109.47066 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00363 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99988 * 180.02562 * 19 18 17 22 22 C 1.46493 * 119.99864 * 179.72721 * 21 19 18 23 23 C 1.53001 * 109.47084 * 180.02562 * 22 21 19 24 24 C 1.52998 * 117.49650 * 243.62172 * 23 22 21 25 25 C 1.52995 * 117.50059 * 174.99811 * 23 22 21 26 26 H 1.09000 * 109.47407 * 296.05128 * 1 2 3 27 27 H 1.09002 * 109.47122 * 56.04517 * 1 2 3 28 28 H 1.08995 * 109.47167 * 176.05153 * 1 2 3 29 29 H 1.08997 * 109.47197 * 53.95097 * 3 2 1 30 30 H 1.09000 * 109.46840 * 173.95513 * 3 2 1 31 31 H 0.96998 * 120.00429 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46954 * 306.04388 * 12 2 1 33 33 H 1.08999 * 109.47203 * 186.04706 * 12 2 1 34 34 H 0.96702 * 114.00083 * 59.99260 * 15 13 12 35 35 H 1.08994 * 109.47172 * 60.00360 * 16 13 12 36 36 H 1.08995 * 109.46912 * 300.00055 * 16 13 12 37 37 H 1.00899 * 111.00040 * 303.95417 * 17 16 13 38 38 H 1.08998 * 109.46809 * 60.00017 * 18 17 16 39 39 H 1.09002 * 109.47056 * 299.99758 * 18 17 16 40 40 H 0.97000 * 119.99339 * 0.02562 * 21 19 18 41 41 H 1.09007 * 109.47196 * 299.99538 * 22 21 19 42 42 H 1.09006 * 109.47678 * 59.99732 * 22 21 19 43 43 H 1.09000 * 115.55299 * 29.32287 * 23 22 21 44 44 H 1.09003 * 117.50441 * 359.97438 * 24 23 22 45 45 H 1.08997 * 117.50181 * 145.01905 * 24 23 22 46 46 H 1.09004 * 117.50332 * 214.97326 * 25 23 22 47 47 H 1.09001 * 117.50181 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5828 4.1867 -3.1382 9 1 0.1055 4.2242 -3.2849 10 1 2.1151 5.5731 -3.1384 11 1 2.1736 3.4291 -4.2706 12 6 1.9954 -0.7660 1.1377 13 6 1.6313 -2.2426 0.9705 14 1 0.5531 -2.3388 0.8435 15 8 2.2955 -2.7696 -0.1797 16 6 2.0698 -3.0198 2.2134 17 7 1.7208 -4.4376 2.0526 18 6 2.1283 -5.2168 3.2294 19 6 1.7542 -6.6627 3.0286 20 8 1.2020 -7.0100 2.0061 21 7 2.0323 -7.5700 3.9858 22 6 1.6633 -8.9745 3.7931 23 6 2.0878 -9.7861 5.0187 24 6 3.1439 -10.8741 4.8144 25 6 1.6848 -11.2613 5.0633 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0797 1.3443 0.1082 31 1 2.9883 4.9173 -0.7779 32 1 1.5610 -0.3871 2.0628 33 1 3.0796 -0.6611 1.1758 34 1 3.2600 -2.7167 -0.1357 35 1 1.5632 -2.6178 3.0907 36 1 3.1480 -2.9236 2.3404 37 1 0.7349 -4.5487 1.8686 38 1 1.6221 -4.8304 4.1140 39 1 3.2070 -5.1355 3.3633 40 1 2.4730 -7.2920 4.8040 41 1 0.5839 -9.0520 3.6626 42 1 2.1652 -9.3640 2.9073 43 1 2.1034 -9.2399 5.9619 44 1 3.5360 -11.0120 3.8067 45 1 3.8547 -11.0438 5.6231 46 1 1.4357 -11.6859 6.0359 47 1 1.1176 -11.6539 4.2194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516277404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:29 Heat of formation + Delta-G solvation = -54.146839 kcal Electronic energy + Delta-G solvation = -23509.681987 eV Core-core repulsion = 19921.391786 eV Total energy + Delta-G solvation = -3588.290201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04116 -38.27744 -37.89602 -35.86886 -34.74858 -34.45069 -32.48661 -30.32694 -28.49227 -27.11582 -26.44336 -24.83910 -23.10707 -22.91918 -21.50742 -21.36552 -20.54988 -20.09797 -17.59690 -16.93462 -16.57374 -16.41612 -15.74622 -15.61869 -15.31219 -15.01706 -14.64920 -14.50614 -14.35952 -14.23389 -13.80522 -13.61020 -13.25128 -13.06989 -12.59520 -12.36038 -12.07177 -11.95655 -11.94745 -11.81207 -11.30042 -11.07398 -11.05611 -10.85952 -10.74816 -10.73402 -10.64071 -10.25955 -10.09273 -9.92139 -9.52141 -9.39824 -9.07785 -8.54836 -8.40383 -7.16249 -5.99938 -4.00791 2.40258 2.67424 3.24099 3.36989 3.40184 3.44337 3.96125 4.09598 4.33860 4.39282 4.45787 4.51006 4.69343 4.74687 4.87092 4.96222 5.05894 5.10452 5.16775 5.20165 5.28287 5.33872 5.35662 5.38173 5.56941 5.57193 5.61471 5.62645 5.70937 6.06605 6.07773 6.21865 6.32889 6.43734 6.68322 6.79954 7.11079 7.23529 7.29869 7.35063 7.83468 7.96758 8.08941 8.19633 8.25385 8.58766 9.07026 9.63342 11.10989 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.057335 B = 0.001801 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.237573 B =15545.951853 C =15676.077235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.662 5.662 18 C 0.041 3.959 19 C 0.511 3.489 20 O -0.520 6.520 21 N -0.734 5.734 22 C 0.151 3.849 23 C -0.171 4.171 24 C -0.177 4.177 25 C -0.171 4.171 26 H 0.007 0.993 27 H 0.075 0.925 28 H 0.047 0.953 29 H -0.011 1.011 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.368 0.632 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.352 0.648 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 -26.226 16.589 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.295 5.295 18 C -0.091 4.091 19 C 0.296 3.704 20 O -0.394 6.394 21 N -0.388 5.388 22 C 0.028 3.972 23 C -0.190 4.190 24 C -0.214 4.214 25 C -0.208 4.208 26 H 0.026 0.974 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.214 0.786 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.171 0.829 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.234 0.766 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.044 -26.780 14.862 30.627 hybrid contribution -0.260 1.529 1.458 2.129 sum -0.304 -25.250 16.320 30.067 Atomic orbital electron populations 1.22261 0.89050 0.99587 1.00375 1.62012 1.06776 1.17393 1.39146 1.19740 0.95285 0.81609 0.96585 1.21147 1.34699 0.96874 1.01713 0.91816 1.24989 0.95315 0.97341 0.97024 1.69950 1.38489 1.11483 1.34174 0.86541 0.78687 0.78232 0.83827 1.20307 1.21414 1.20097 1.22725 1.00564 0.93835 0.93309 1.21866 0.97707 0.90561 0.84260 0.88915 1.86620 1.22845 1.83850 1.40372 1.22781 1.01675 0.87444 0.98379 1.60030 1.25136 1.08306 1.36033 1.21810 1.02851 0.90731 0.93747 1.20678 0.78696 0.87859 0.83121 1.90749 1.40801 1.80819 1.27045 1.45968 1.63118 1.08299 1.21426 1.20854 1.00383 0.79930 0.96066 1.22461 1.05416 0.91571 0.99548 1.23107 0.92215 1.02668 1.03379 1.22966 0.98195 0.96060 1.03618 0.97409 0.90649 0.93451 0.99352 0.95341 0.92940 0.95571 0.91086 0.78600 0.94507 0.90467 0.82890 0.92537 0.88062 0.76587 0.91139 0.91219 0.87198 0.88394 0.88563 0.88393 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.66 4.70 -244.37 -1.15 -12.81 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.52 8.46 -34.44 -0.29 -14.81 16 5 H 0.06 1.83 7.12 -52.48 -0.37 1.45 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.43 16 13 C 0.12 1.72 3.13 -26.73 -0.08 1.63 16 14 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 15 O -0.53 -8.93 13.15 -35.23 -0.46 -9.39 16 16 C 0.03 0.31 5.35 -3.82 -0.02 0.28 16 17 N -0.66 -7.72 5.99 -115.06 -0.69 -8.41 16 18 C 0.04 0.35 6.17 -4.98 -0.03 0.32 16 19 C 0.51 5.21 7.87 -10.98 -0.09 5.13 16 20 O -0.52 -7.76 16.20 5.56 0.09 -7.67 16 21 N -0.73 -5.02 5.56 -60.29 -0.33 -5.35 16 22 C 0.15 1.04 5.95 -4.04 -0.02 1.02 16 23 C -0.17 -0.80 5.85 -90.62 -0.53 -1.33 16 24 C -0.18 -0.78 10.18 -26.73 -0.27 -1.06 16 25 C -0.17 -0.73 10.25 -26.73 -0.27 -1.01 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 28 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 34 H 0.37 5.11 9.05 45.56 0.41 5.53 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.35 4.38 8.43 -39.29 -0.33 4.05 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 1.55 8.40 -40.82 -0.34 1.21 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 43 H 0.11 0.40 8.04 -51.93 -0.42 -0.02 16 44 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -34.94 386.97 -9.70 -44.64 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.50 Total: 4.02 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.20 Total: -1.57 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -1.44 Total: -52.86 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.37 Total: -17.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.94 -9.70 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516277404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.506 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds