Wall clock time and date at job start Tue Mar 31 2020 03:21:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46502 * 109.47170 * 2 1
4 4 C 1.46762 * 124.34755 * 90.00281 * 3 2 1
5 5 C 1.54477 * 105.46991 * 162.96079 * 4 3 2
6 6 H 1.09008 * 110.96887 * 267.25578 * 5 4 3
7 7 N 1.46909 * 110.96805 * 143.53688 * 5 4 3
8 8 C 1.46894 * 110.99997 * 158.08879 * 7 5 4
9 9 C 1.52997 * 109.46925 * 180.02562 * 8 7 5
10 10 H 1.09000 * 109.47110 * 304.99451 * 9 8 7
11 11 O 1.42900 * 109.47670 * 64.99942 * 9 8 7
12 12 C 1.53005 * 109.47211 * 184.99791 * 9 8 7
13 13 N 1.46901 * 109.47258 * 179.97438 * 12 9 8
14 14 C 1.46900 * 110.99685 * 293.95080 * 13 12 9
15 15 C 1.46902 * 110.99644 * 169.99949 * 13 12 9
16 16 C 1.50706 * 109.46580 * 189.99608 * 15 13 12
17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 13
18 18 C 1.37879 * 119.99398 * 179.97438 * 16 15 13
19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16
22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16
23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16
24 24 C 1.54625 * 101.80136 * 25.39609 * 5 4 3
25 25 C 1.34418 * 124.34989 * 269.97818 * 3 2 1
26 26 O 1.21282 * 124.94320 * 0.40004 * 25 3 2
27 27 H 1.08996 * 109.47602 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.46566 * 300.00227 * 1 2 3
29 29 H 1.09000 * 109.46775 * 59.99578 * 1 2 3
30 30 H 1.09004 * 109.46566 * 239.99773 * 2 1 3
31 31 H 1.09000 * 109.46775 * 120.00422 * 2 1 3
32 32 H 1.08996 * 110.24562 * 43.95928 * 4 3 2
33 33 H 1.09002 * 110.24508 * 281.96280 * 4 3 2
34 34 H 1.00905 * 110.99517 * 282.04264 * 7 5 4
35 35 H 1.08998 * 109.47261 * 59.99653 * 8 7 5
36 36 H 1.09006 * 109.47159 * 299.99764 * 8 7 5
37 37 H 0.96695 * 113.99841 * 59.99720 * 11 9 8
38 38 H 1.08997 * 109.46846 * 59.99746 * 12 9 8
39 39 H 1.09000 * 109.46805 * 299.99846 * 12 9 8
40 40 H 1.08996 * 109.47431 * 296.04636 * 14 13 12
41 41 H 1.08998 * 109.47264 * 56.05230 * 14 13 12
42 42 H 1.09001 * 109.46708 * 176.04228 * 14 13 12
43 43 H 1.09000 * 109.47263 * 70.00212 * 15 13 12
44 44 H 1.08992 * 109.47049 * 310.00061 * 15 13 12
45 45 H 0.97000 * 119.99706 * 359.97438 * 19 18 16
46 46 H 1.09006 * 110.48331 * 93.89914 * 24 5 4
47 47 H 1.08998 * 110.48367 * 216.54014 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2945 2.1619 1.2117
5 6 3.1750 3.3437 0.7488
6 1 4.2337 3.1028 0.8457
7 7 2.8468 4.5670 1.4931
8 6 3.9640 5.5201 1.4582
9 6 3.5858 6.7781 2.2426
10 1 2.6545 7.1854 1.8490
11 8 3.4150 6.4461 3.6220
12 6 4.6975 7.8199 2.1028
13 7 4.3341 9.0280 2.8554
14 6 3.1623 9.6855 2.2616
15 6 5.4701 9.9553 2.9430
16 6 5.1448 11.0573 3.9181
17 1 4.1900 11.0676 4.4227
18 6 6.0668 12.0519 4.1669
19 7 7.2297 12.0391 3.5529
20 14 5.6639 13.4175 5.3761
21 1 6.8122 14.3550 5.4646
22 1 4.4604 14.1523 4.9102
23 1 5.3986 12.8313 6.7145
24 6 2.7713 3.4754 -0.7380
25 6 2.2716 2.0962 -1.1098
26 8 2.1225 1.6940 -2.2442
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3632 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 2.8321 1.5529 1.9384
33 1 1.3639 2.5310 1.6428
34 1 2.0006 4.9886 1.1406
35 1 4.1811 5.7878 0.4242
36 1 4.8456 5.0633 1.9080
37 1 4.2058 6.0771 4.0385
38 1 4.8278 8.0732 1.0507
39 1 5.6288 7.4126 2.4964
40 1 3.4094 10.0312 1.2579
41 1 2.3359 8.9767 2.2086
42 1 2.8721 10.5364 2.8779
43 1 5.6647 10.3853 1.9605
44 1 6.3535 9.4163 3.2851
45 1 7.4390 11.3298 2.9253
46 1 1.9769 4.2128 -0.8537
47 1 3.6352 3.7455 -1.3454
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000517359658.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:57
Heat of formation + Delta-G solvation = -107.009423 kcal
Electronic energy + Delta-G solvation = -24365.424867 eV
Core-core repulsion = 20774.842372 eV
Total energy + Delta-G solvation = -3590.582495 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.56175 -39.61078 -38.11295 -37.22183 -36.12769 -34.81018 -33.55693 -31.09511
-29.70236 -28.78366 -28.35969 -26.92245 -25.06038 -24.25353 -22.93537 -22.46920
-21.76058 -20.40590 -18.91241 -18.09291 -17.73447 -17.19064 -17.07458 -16.59160
-16.30401 -15.85825 -15.70957 -15.57766 -15.48315 -15.04565 -14.78081 -14.59294
-14.47917 -14.20505 -13.95455 -13.69102 -13.35232 -13.27656 -13.13259 -13.00983
-12.87668 -12.57533 -12.52019 -12.46215 -12.34197 -12.25455 -12.03362 -11.91619
-11.64598 -11.06837 -11.00229 -10.59220 -10.54289 -9.78787 -9.40124 -9.05885
-8.67292 -6.37897 1.45379 1.54587 1.62868 1.82496 1.97030 2.56112
2.76945 3.14198 3.23288 3.43454 3.54882 3.72426 3.90553 3.93394
4.00542 4.11997 4.14701 4.23255 4.28780 4.40288 4.45640 4.46452
4.57524 4.60051 4.61524 4.64050 4.73703 4.78532 4.83968 4.86597
4.90739 4.92666 4.96143 5.09683 5.20180 5.23092 5.55534 5.77912
5.90430 5.98650 6.06111 6.33160 6.37659 6.43305 6.65585 7.05121
7.05977 7.41894 8.71340
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.042486 B = 0.002163 C = 0.002126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 658.884524 B =12940.579269 C =13164.790423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.114 3.886
3 N -0.615 5.615
4 C 0.113 3.887
5 C 0.089 3.911
6 H 0.109 0.891
7 N -0.664 5.664
8 C 0.038 3.962
9 C 0.129 3.871
10 H 0.092 0.908
11 O -0.553 6.553
12 C 0.020 3.980
13 N -0.534 5.534
14 C 0.042 3.958
15 C 0.194 3.806
16 C -0.598 4.598
17 H 0.053 0.947
18 C -0.039 4.039
19 N -0.938 5.938
20 Si 1.121 2.879
21 H -0.284 1.284
22 H -0.270 1.270
23 H -0.270 1.270
24 C -0.182 4.182
25 C 0.509 3.491
26 O -0.587 6.587
27 H 0.084 0.916
28 H 0.065 0.935
29 H 0.033 0.967
30 H 0.066 0.934
31 H 0.108 0.892
32 H 0.102 0.898
33 H 0.084 0.916
34 H 0.350 0.650
35 H 0.049 0.951
36 H 0.088 0.912
37 H 0.379 0.621
38 H 0.032 0.968
39 H 0.069 0.931
40 H 0.008 0.992
41 H 0.082 0.918
42 H 0.051 0.949
43 H -0.045 1.045
44 H 0.001 0.999
45 H 0.253 0.747
46 H 0.112 0.888
47 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.120 -23.588 -4.847 26.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.007 4.007
3 N -0.348 5.348
4 C -0.010 4.010
5 C -0.022 4.022
6 H 0.127 0.873
7 N -0.295 5.295
8 C -0.092 4.092
9 C 0.069 3.931
10 H 0.110 0.890
11 O -0.358 6.358
12 C -0.109 4.109
13 N -0.258 5.258
14 C -0.106 4.106
15 C 0.067 3.933
16 C -0.636 4.636
17 H 0.071 0.929
18 C -0.236 4.236
19 N -0.576 5.576
20 Si 0.942 3.058
21 H -0.209 1.209
22 H -0.195 1.195
23 H -0.195 1.195
24 C -0.224 4.224
25 C 0.298 3.702
26 O -0.468 6.468
27 H 0.103 0.897
28 H 0.084 0.916
29 H 0.053 0.947
30 H 0.085 0.915
31 H 0.126 0.874
32 H 0.120 0.880
33 H 0.103 0.897
34 H 0.170 0.830
35 H 0.067 0.933
36 H 0.106 0.894
37 H 0.227 0.773
38 H 0.050 0.950
39 H 0.088 0.912
40 H 0.027 0.973
41 H 0.100 0.900
42 H 0.070 0.930
43 H -0.028 1.028
44 H 0.019 0.981
45 H 0.062 0.938
46 H 0.130 0.870
47 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -11.184 -22.701 -3.724 25.579
hybrid contribution 0.432 -0.853 -2.850 3.007
sum -10.751 -23.554 -6.575 26.713
Atomic orbital electron populations
1.22111 0.95289 1.03261 1.01589 1.21535 0.94827 0.80482 1.03836
1.48549 1.64522 1.14328 1.07370 1.22217 1.00637 0.92000 0.86131
1.22477 1.00706 0.91007 0.88059 0.87257 1.60272 1.05872 1.05803
1.57524 1.22578 0.94792 0.92432 0.99379 1.21725 0.97212 0.91291
0.82867 0.89042 1.86562 1.40811 1.85214 1.23238 1.22905 0.99654
0.92478 0.95881 1.61850 1.06063 1.06533 1.51323 1.22216 0.93396
0.99097 0.95934 1.19557 0.89422 0.91006 0.93326 1.22297 1.04179
1.10390 1.26741 0.92871 1.27415 0.92753 1.02799 1.00668 1.70938
1.23533 1.35119 1.27978 0.82882 0.75924 0.72931 0.74093 1.20923
1.19521 1.19487 1.23200 1.03966 0.94854 1.00395 1.21289 0.76295
0.88538 0.84109 1.90692 1.56244 1.76545 1.23277 0.89714 0.91574
0.94741 0.91517 0.87381 0.87989 0.89737 0.83031 0.93254 0.89378
0.77307 0.95006 0.91221 0.97317 0.89989 0.92979 1.02789 0.98132
0.93789 0.87011 0.87856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16
2 C 0.11 1.35 6.65 86.38 0.57 1.92 16
3 N -0.61 -8.82 2.93 -817.90 -2.40 -11.22 16
4 C 0.11 1.10 7.08 86.83 0.62 1.72 16
5 C 0.09 0.94 3.45 45.97 0.16 1.10 16
6 H 0.11 1.05 7.87 -2.38 -0.02 1.03 16
7 N -0.66 -8.51 6.29 -486.12 -3.06 -11.56 16
8 C 0.04 0.59 5.20 86.30 0.45 1.04 16
9 C 0.13 2.99 3.02 30.59 0.09 3.08 16
10 H 0.09 2.15 6.47 -2.39 -0.02 2.13 16
11 O -0.55 -14.79 13.15 -148.98 -1.96 -16.75 16
12 C 0.02 0.62 4.62 86.30 0.40 1.02 16
13 N -0.53 -22.39 4.62 -927.04 -4.28 -26.68 16
14 C 0.04 1.59 9.16 127.69 1.17 2.76 16
15 C 0.19 10.14 4.03 85.56 0.35 10.49 16
16 C -0.60 -34.30 8.51 25.60 0.22 -34.08 16
17 H 0.05 3.05 7.10 -2.91 -0.02 3.03 16
18 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16
19 N -0.94 -57.90 13.65 21.45 0.29 -57.61 16
20 Si 1.12 50.45 29.90 68.60 2.05 52.50 16
21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16
23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16
24 C -0.18 -2.49 6.55 30.60 0.20 -2.29 16
25 C 0.51 10.29 8.02 87.92 0.71 11.00 16
26 O -0.59 -17.45 17.59 -3.04 -0.05 -17.50 16
27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16
30 H 0.07 0.99 7.93 -2.39 -0.02 0.97 16
31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16
33 H 0.08 0.83 8.07 -2.39 -0.02 0.81 16
34 H 0.35 4.29 8.15 -89.69 -0.73 3.56 16
35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
36 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16
37 H 0.38 8.32 9.04 -74.06 -0.67 7.65 16
38 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16
39 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16
40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
41 H 0.08 2.55 6.30 -2.39 -0.02 2.54 16
42 H 0.05 2.21 6.86 -2.39 -0.02 2.19 16
43 H -0.05 -2.55 7.99 -2.39 -0.02 -2.57 16
44 H 0.00 0.04 7.80 -2.39 -0.02 0.02 16
45 H 0.25 15.77 7.22 -92.71 -0.67 15.10 16
46 H 0.11 1.38 7.61 -2.38 -0.02 1.36 16
47 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
Total: -1.00 -75.90 379.16 -3.62 -79.53
By element:
Atomic # 1 Polarization: 14.78 SS G_CDS: -0.34 Total: 14.43 kcal
Atomic # 6 Polarization: -11.27 SS G_CDS: 6.13 Total: -5.14 kcal
Atomic # 7 Polarization: -97.63 SS G_CDS: -9.45 Total: -107.07 kcal
Atomic # 8 Polarization: -32.23 SS G_CDS: -2.01 Total: -34.25 kcal
Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal
Total: -75.90 -3.62 -79.53 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000517359658.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal
(2) G-P(sol) polarization free energy of solvation -75.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds