Wall clock time and date at job start Tue Mar 31 2020 03:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.50699 * 109.46863 * 119.99808 * 2 1 3 5 5 O 1.21280 * 119.99866 * 119.99939 * 4 2 1 6 6 N 1.34772 * 120.00427 * 300.00033 * 4 2 1 7 7 C 1.46504 * 119.99835 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00374 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47451 * 89.99752 * 8 6 4 10 10 H 1.08011 * 119.99594 * 0.02562 * 9 8 6 11 11 C 1.37878 * 120.00353 * 180.02562 * 9 8 6 12 12 N 1.31510 * 119.99975 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99833 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47113 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46733 * 119.99945 * 13 11 9 16 16 H 1.48498 * 109.47044 * 239.99941 * 13 11 9 17 17 N 1.46900 * 109.47063 * 239.99993 * 2 1 3 18 18 C 1.47897 * 110.99752 * 180.12964 * 17 2 1 19 19 C 1.53998 * 107.05888 * 145.84400 * 18 17 2 20 20 H 1.09002 * 110.30791 * 239.85590 * 19 18 17 21 21 O 1.42898 * 110.31200 * 117.78594 * 19 18 17 22 22 C 1.54598 * 105.13635 * 358.77287 * 19 18 17 23 23 H 1.08994 * 110.72376 * 96.40502 * 22 19 18 24 24 N 1.46904 * 110.72110 * 219.68473 * 22 19 18 25 25 C 1.46898 * 110.99847 * 180.02562 * 24 22 19 26 26 C 1.46905 * 111.00166 * 303.95494 * 24 22 19 27 27 C 1.48539 * 110.99796 * 297.52086 * 17 2 1 28 28 H 1.08999 * 109.46944 * 300.00194 * 1 2 3 29 29 H 1.08999 * 109.46933 * 59.99921 * 1 2 3 30 30 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46483 * 90.00489 * 7 6 4 32 32 H 1.08993 * 109.47171 * 209.99842 * 7 6 4 33 33 H 1.08999 * 109.46932 * 330.00589 * 7 6 4 34 34 H 1.08996 * 109.47430 * 209.99760 * 8 6 4 35 35 H 1.09001 * 109.47263 * 330.00002 * 8 6 4 36 36 H 0.96996 * 120.00076 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.92227 * 26.48731 * 18 17 2 38 38 H 1.08999 * 109.91658 * 265.19118 * 18 17 2 39 39 H 0.96701 * 113.99817 * 62.78647 * 21 19 18 40 40 H 1.08994 * 109.47457 * 60.00139 * 25 24 22 41 41 H 1.09000 * 109.46977 * 179.97438 * 25 24 22 42 42 H 1.09007 * 109.47185 * 299.99754 * 25 24 22 43 43 H 1.09001 * 109.46997 * 59.99536 * 26 24 22 44 44 H 1.08992 * 109.47171 * 180.02562 * 26 24 22 45 45 H 1.09003 * 109.46718 * 300.00488 * 26 24 22 46 46 H 1.08999 * 110.66816 * 318.71519 * 27 17 2 47 47 H 1.09005 * 110.66488 * 81.84813 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 0.8650 0.9415 2.5890 8 6 2.1955 -0.9402 3.6507 9 6 3.5229 -0.3562 4.0607 10 1 3.9587 0.4490 3.4877 11 6 4.1810 -0.8497 5.1672 12 7 3.6502 -1.8298 5.8652 13 14 5.8261 -0.1253 5.6756 14 1 6.2018 0.9592 4.7334 15 1 5.7197 0.4282 7.0495 16 1 6.8640 -1.1869 5.6486 17 7 2.0197 -0.6925 -1.1994 18 6 3.4982 -0.7149 -1.2320 19 6 3.9155 -2.0460 -1.8844 20 1 4.5238 -2.6310 -1.1946 21 8 4.6356 -1.8011 -3.0941 22 6 2.5893 -2.7809 -2.1862 23 1 2.2826 -2.6146 -3.2188 24 7 2.7154 -4.2172 -1.9049 25 6 1.4584 -4.9218 -2.1903 26 6 3.8309 -4.8055 -2.6584 27 6 1.5930 -2.1153 -1.2041 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.1832 0.6439 2.6222 32 1 1.1228 1.4667 3.5086 33 1 1.0288 1.6002 1.7361 34 1 1.4776 -0.8150 4.4613 35 1 2.3170 -2.0014 3.4337 36 1 4.1134 -2.1772 6.6434 37 1 3.8929 -0.6587 -0.2176 38 1 3.8692 0.1213 -1.8245 39 1 5.4662 -1.3224 -2.9674 40 1 1.2001 -4.7930 -3.2413 41 1 1.5796 -5.9832 -1.9738 42 1 0.6628 -4.5122 -1.5678 43 1 4.7605 -4.3111 -2.3763 44 1 3.9014 -5.8693 -2.4319 45 1 3.6581 -4.6723 -3.7263 46 1 1.6870 -2.5484 -0.2083 47 1 0.5707 -2.2091 -1.5707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574389308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:39 Heat of formation + Delta-G solvation = -44.489934 kcal Electronic energy + Delta-G solvation = -26663.554840 eV Core-core repulsion = 23075.683394 eV Total energy + Delta-G solvation = -3587.871446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.48983 -38.57555 -36.16253 -35.80951 -34.86688 -32.89499 -31.76736 -28.69166 -28.29429 -27.59571 -26.76915 -26.09378 -24.22489 -23.28222 -22.09295 -20.89373 -19.99987 -18.46127 -17.21447 -16.65799 -16.39569 -16.31984 -15.67675 -15.27937 -14.72046 -14.60359 -14.41245 -14.01555 -13.79543 -13.77037 -13.30528 -13.01063 -12.86350 -12.50247 -12.34136 -12.29219 -12.15260 -12.09853 -11.58383 -11.56729 -11.35945 -11.26748 -11.09938 -10.99633 -10.86826 -10.80864 -10.61599 -10.31864 -10.19517 -9.94771 -9.62778 -9.48285 -8.47051 -8.26118 -7.87240 -7.64129 -6.07479 -4.12425 3.26744 3.29942 3.35024 3.38899 3.77180 3.93904 4.16235 4.41694 4.42129 4.68653 4.91852 5.04821 5.23324 5.26510 5.27775 5.31600 5.38131 5.39881 5.48342 5.58170 5.60071 5.69816 5.73440 5.82109 5.85366 5.89953 5.92703 5.98097 5.99836 6.08401 6.14022 6.17103 6.28335 6.39820 6.88233 6.96436 7.03838 7.14696 7.20196 7.41575 7.50165 7.70985 7.88422 8.19966 8.36584 8.85493 9.02317 9.52840 11.00616 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.004759 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.527127 B = 5882.592652 C = 6552.449538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 H 0.102 0.898 4 C 0.477 3.523 5 O -0.531 6.531 6 N -0.597 5.597 7 C 0.080 3.920 8 C 0.244 3.756 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.488 5.488 18 C 0.004 3.996 19 C 0.106 3.894 20 H 0.077 0.923 21 O -0.568 6.568 22 C 0.096 3.904 23 H 0.057 0.943 24 N -0.535 5.535 25 C 0.027 3.973 26 C 0.029 3.971 27 C 0.028 3.972 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.376 0.624 40 H 0.022 0.978 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.100 0.900 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 1.473 -15.336 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.120 0.880 4 C 0.262 3.738 5 O -0.409 6.409 6 N -0.329 5.329 7 C -0.064 4.064 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.211 5.211 18 C -0.124 4.124 19 C 0.046 3.954 20 H 0.095 0.905 21 O -0.374 6.374 22 C -0.013 4.013 23 H 0.075 0.925 24 N -0.260 5.260 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.099 4.099 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.587 0.753 -15.416 16.415 hybrid contribution 1.544 0.476 0.605 1.725 sum -4.042 1.229 -14.812 15.402 Atomic orbital electron populations 1.21998 0.92503 1.02971 1.03226 1.21975 0.97308 0.99194 0.87851 0.88021 1.21401 0.81392 0.85700 0.85302 1.90643 1.37940 1.26579 1.85783 1.48260 1.49128 1.27906 1.07572 1.21811 0.93845 0.88191 1.02527 1.19290 0.94182 0.93758 0.80293 1.21434 1.04817 1.18947 1.11194 0.92570 1.24931 0.97917 0.94940 0.96269 1.69937 1.38912 1.26063 1.18360 0.86460 0.83792 0.79036 0.78232 1.19861 1.20936 1.20863 1.65166 1.08619 1.13655 1.33698 1.23628 0.89140 0.97573 1.02076 1.22581 0.92860 0.94549 0.85372 0.90472 1.86477 1.38575 1.79820 1.32504 1.22390 0.94195 0.86873 0.97875 0.92469 1.61992 1.04879 1.02053 1.57027 1.22366 0.91866 0.99131 0.98777 1.22343 0.94704 0.99605 0.95255 1.23522 0.96991 0.87799 1.01613 0.90490 0.91284 0.92337 0.93309 0.90861 0.92215 0.95137 0.93837 0.92751 0.90536 0.90656 0.77646 0.95914 0.91385 0.91212 0.91134 0.91719 0.95786 0.88206 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.74 37.16 0.32 -1.51 16 2 C 0.05 0.75 2.05 -68.86 -0.14 0.61 16 3 H 0.10 1.44 7.40 -51.93 -0.38 1.05 16 4 C 0.48 9.45 5.96 -10.99 -0.07 9.39 16 5 O -0.53 -12.43 11.33 5.56 0.06 -12.37 16 6 N -0.60 -12.23 2.86 -182.96 -0.52 -12.75 16 7 C 0.08 1.22 8.80 59.85 0.53 1.75 16 8 C 0.24 6.29 5.16 -5.20 -0.03 6.26 16 9 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.49 -7.53 5.30 -223.88 -1.19 -8.71 16 18 C 0.00 0.07 5.81 -2.75 -0.02 0.05 16 19 C 0.11 1.61 2.94 -25.37 -0.07 1.53 16 20 H 0.08 1.31 7.35 -51.93 -0.38 0.93 16 21 O -0.57 -7.53 12.98 -35.23 -0.46 -7.99 16 22 C 0.10 1.45 2.50 -65.85 -0.16 1.28 16 23 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 24 N -0.54 -7.83 4.86 -240.93 -1.17 -9.00 16 25 C 0.03 0.32 9.41 60.06 0.57 0.89 16 26 C 0.03 0.37 9.16 60.07 0.55 0.92 16 27 C 0.03 0.45 3.76 -1.90 -0.01 0.44 16 28 H 0.08 0.86 4.53 -51.93 -0.24 0.62 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.76 7.00 -51.93 -0.36 0.39 16 31 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 32 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 33 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.44 5.64 -51.93 -0.29 1.15 16 38 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 39 H 0.38 3.47 9.11 45.56 0.42 3.89 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.07 0.84 7.27 -51.93 -0.38 0.46 16 43 H 0.07 0.94 6.51 -51.93 -0.34 0.61 16 44 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 1.91 5.16 -51.93 -0.27 1.64 16 47 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -32.96 357.49 -8.12 -41.08 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.00 Total: 5.13 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 1.05 Total: 8.25 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -2.14 Total: -56.18 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.39 Total: -20.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.96 -8.12 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574389308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.405 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds