Wall clock time and date at job start Tue Mar 31 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.50699 * 109.46863 * 119.99808 * 2 1 3 5 5 O 1.21280 * 119.99866 * 119.99939 * 4 2 1 6 6 N 1.34772 * 120.00427 * 300.00033 * 4 2 1 7 7 C 1.46504 * 119.99835 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00374 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47451 * 89.99752 * 8 6 4 10 10 H 1.08011 * 119.99594 * 0.02562 * 9 8 6 11 11 C 1.37878 * 120.00353 * 180.02562 * 9 8 6 12 12 N 1.31510 * 119.99975 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99833 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47113 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46733 * 119.99945 * 13 11 9 16 16 H 1.48498 * 109.47044 * 239.99941 * 13 11 9 17 17 N 1.46900 * 109.47063 * 239.99993 * 2 1 3 18 18 C 1.47897 * 110.99752 * 180.12964 * 17 2 1 19 19 C 1.53998 * 107.05888 * 145.84400 * 18 17 2 20 20 H 1.09002 * 110.30791 * 239.85590 * 19 18 17 21 21 O 1.42898 * 110.31200 * 117.78594 * 19 18 17 22 22 C 1.54598 * 105.13635 * 358.77287 * 19 18 17 23 23 H 1.08994 * 110.72376 * 96.40502 * 22 19 18 24 24 N 1.46904 * 110.72110 * 219.68473 * 22 19 18 25 25 C 1.46898 * 110.99847 * 180.02562 * 24 22 19 26 26 C 1.46905 * 111.00166 * 303.95494 * 24 22 19 27 27 C 1.48539 * 110.99796 * 297.52086 * 17 2 1 28 28 H 1.08999 * 109.46944 * 300.00194 * 1 2 3 29 29 H 1.08999 * 109.46933 * 59.99921 * 1 2 3 30 30 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46483 * 90.00489 * 7 6 4 32 32 H 1.08993 * 109.47171 * 209.99842 * 7 6 4 33 33 H 1.08999 * 109.46932 * 330.00589 * 7 6 4 34 34 H 1.08996 * 109.47430 * 209.99760 * 8 6 4 35 35 H 1.09001 * 109.47263 * 330.00002 * 8 6 4 36 36 H 0.96996 * 120.00076 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.92227 * 26.48731 * 18 17 2 38 38 H 1.08999 * 109.91658 * 265.19118 * 18 17 2 39 39 H 0.96701 * 113.99817 * 62.78647 * 21 19 18 40 40 H 1.08994 * 109.47457 * 60.00139 * 25 24 22 41 41 H 1.09000 * 109.46977 * 179.97438 * 25 24 22 42 42 H 1.09007 * 109.47185 * 299.99754 * 25 24 22 43 43 H 1.09001 * 109.46997 * 59.99536 * 26 24 22 44 44 H 1.08992 * 109.47171 * 180.02562 * 26 24 22 45 45 H 1.09003 * 109.46718 * 300.00488 * 26 24 22 46 46 H 1.08999 * 110.66816 * 318.71519 * 27 17 2 47 47 H 1.09005 * 110.66488 * 81.84813 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 0.8650 0.9415 2.5890 8 6 2.1955 -0.9402 3.6507 9 6 3.5229 -0.3562 4.0607 10 1 3.9587 0.4490 3.4877 11 6 4.1810 -0.8497 5.1672 12 7 3.6502 -1.8298 5.8652 13 14 5.8261 -0.1253 5.6756 14 1 6.2018 0.9592 4.7334 15 1 5.7197 0.4282 7.0495 16 1 6.8640 -1.1869 5.6486 17 7 2.0197 -0.6925 -1.1994 18 6 3.4982 -0.7149 -1.2320 19 6 3.9155 -2.0460 -1.8844 20 1 4.5238 -2.6310 -1.1946 21 8 4.6356 -1.8011 -3.0941 22 6 2.5893 -2.7809 -2.1862 23 1 2.2826 -2.6146 -3.2188 24 7 2.7154 -4.2172 -1.9049 25 6 1.4584 -4.9218 -2.1903 26 6 3.8309 -4.8055 -2.6584 27 6 1.5930 -2.1153 -1.2041 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.1832 0.6439 2.6222 32 1 1.1228 1.4667 3.5086 33 1 1.0288 1.6002 1.7361 34 1 1.4776 -0.8150 4.4613 35 1 2.3170 -2.0014 3.4337 36 1 4.1134 -2.1772 6.6434 37 1 3.8929 -0.6587 -0.2176 38 1 3.8692 0.1213 -1.8245 39 1 5.4662 -1.3224 -2.9674 40 1 1.2001 -4.7930 -3.2413 41 1 1.5796 -5.9832 -1.9738 42 1 0.6628 -4.5122 -1.5678 43 1 4.7605 -4.3111 -2.3763 44 1 3.9014 -5.8693 -2.4319 45 1 3.6581 -4.6723 -3.7263 46 1 1.6870 -2.5484 -0.2083 47 1 0.5707 -2.2091 -1.5707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574389308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:38 Heat of formation + Delta-G solvation = -72.931145 kcal Electronic energy + Delta-G solvation = -26664.788143 eV Core-core repulsion = 23075.683394 eV Total energy + Delta-G solvation = -3589.104750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85360 -39.90948 -37.36419 -37.04356 -36.44525 -34.87525 -33.13327 -30.00802 -29.74110 -28.95229 -27.93881 -27.52087 -25.73777 -24.74459 -23.41490 -22.29564 -21.18613 -19.95359 -18.71495 -18.34803 -17.90723 -17.62492 -16.98231 -16.75296 -16.44556 -15.95562 -15.70041 -15.28238 -15.05959 -15.02615 -14.61682 -14.41391 -14.20345 -14.06040 -13.66537 -13.42438 -13.32845 -13.24261 -13.23041 -12.89967 -12.73550 -12.64422 -12.57938 -12.48198 -12.31676 -12.14856 -12.10143 -12.03793 -11.68151 -11.49726 -11.17001 -10.91886 -10.66711 -9.40286 -9.32918 -9.24006 -8.23804 -6.38722 1.34217 1.36268 1.47831 1.80352 2.30504 2.46170 2.64522 3.02285 3.05847 3.29462 3.49913 3.69120 3.78119 4.10082 4.12155 4.19287 4.27007 4.33231 4.42410 4.43364 4.55731 4.59551 4.63653 4.68598 4.69234 4.81981 4.85125 4.88821 4.92430 4.95841 4.99067 5.00692 5.02538 5.11831 5.22765 5.28451 5.55568 5.65839 5.80588 5.83847 6.04849 6.06006 6.10519 6.68724 6.77459 6.79607 7.27130 7.47280 8.83185 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.004759 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.527127 B = 5882.592652 C = 6552.449538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.122 0.878 4 C 0.468 3.532 5 O -0.575 6.575 6 N -0.606 5.606 7 C 0.074 3.926 8 C 0.261 3.739 9 C -0.538 4.538 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.269 1.269 16 H -0.283 1.283 17 N -0.478 5.478 18 C 0.007 3.993 19 C 0.114 3.886 20 H 0.050 0.950 21 O -0.568 6.568 22 C 0.101 3.899 23 H 0.059 0.941 24 N -0.561 5.561 25 C 0.027 3.973 26 C 0.033 3.967 27 C 0.034 3.966 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.020 0.980 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.394 0.606 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 3.254 -16.979 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 H 0.139 0.861 4 C 0.256 3.744 5 O -0.456 6.456 6 N -0.337 5.337 7 C -0.068 4.068 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.194 1.194 16 H -0.209 1.209 17 N -0.201 5.201 18 C -0.121 4.121 19 C 0.054 3.946 20 H 0.068 0.932 21 O -0.375 6.375 22 C -0.009 4.009 23 H 0.077 0.923 24 N -0.286 5.286 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.094 4.094 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.244 0.756 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.082 0.918 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.111 2.573 -17.081 18.323 hybrid contribution 1.697 -0.119 1.091 2.021 sum -4.414 2.454 -15.991 16.769 Atomic orbital electron populations 1.22019 0.89758 1.03039 1.05248 1.22120 0.99313 0.99087 0.84840 0.86065 1.22385 0.80481 0.85294 0.86254 1.90635 1.39780 1.28673 1.86503 1.48262 1.49929 1.29249 1.06278 1.22120 0.94333 0.86620 1.03693 1.18699 0.93582 0.91658 0.82108 1.21695 1.05832 1.18854 1.11289 0.93029 1.25840 1.01723 0.95241 0.96289 1.70055 1.40613 1.27303 1.18899 0.85394 0.78854 0.78279 0.78442 1.19079 1.19424 1.20878 1.65257 1.08188 1.13401 1.33226 1.23582 0.89485 0.98680 1.00393 1.22326 0.92844 0.93979 0.85431 0.93232 1.86445 1.39621 1.80185 1.31285 1.22323 0.93696 0.87339 0.97498 0.92280 1.61987 1.06378 1.02119 1.58077 1.22397 0.90685 0.99424 0.99519 1.22317 0.93692 1.00089 0.95389 1.23407 0.98246 0.87832 0.99878 0.89047 0.88610 0.93303 0.90560 0.91740 0.88756 0.96197 0.98636 0.92456 0.94067 0.88527 0.75623 0.94512 0.90329 0.91624 0.92292 0.90444 0.95070 0.91828 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.74 71.98 0.63 -2.44 16 2 C 0.06 1.69 2.05 44.17 0.09 1.78 16 3 H 0.12 3.03 7.40 -2.39 -0.02 3.01 16 4 C 0.47 18.80 5.96 87.66 0.52 19.32 16 5 O -0.57 -28.30 11.33 -3.03 -0.03 -28.33 16 6 N -0.61 -25.07 2.86 -851.14 -2.43 -27.50 16 7 C 0.07 2.12 8.80 127.77 1.12 3.25 16 8 C 0.26 14.05 5.16 85.63 0.44 14.49 16 9 C -0.54 -30.92 9.39 25.60 0.24 -30.67 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 13 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 N -0.48 -14.06 5.30 -862.22 -4.57 -18.63 16 18 C 0.01 0.23 5.81 86.45 0.50 0.73 16 19 C 0.11 3.48 2.94 31.48 0.09 3.57 16 20 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 21 O -0.57 -14.38 12.98 -148.98 -1.93 -16.32 16 22 C 0.10 2.99 2.50 46.12 0.12 3.11 16 23 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 24 N -0.56 -16.37 4.86 -916.15 -4.45 -20.82 16 25 C 0.03 0.64 9.41 127.69 1.20 1.84 16 26 C 0.03 0.83 9.16 127.69 1.17 2.00 16 27 C 0.03 1.06 3.76 86.65 0.33 1.39 16 28 H 0.09 1.70 4.53 -2.39 -0.01 1.68 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.16 7.00 -2.39 -0.02 1.14 16 31 H 0.08 1.77 6.95 -2.38 -0.02 1.76 16 32 H 0.06 1.96 8.07 -2.39 -0.02 1.95 16 33 H 0.09 2.04 6.01 -2.39 -0.01 2.02 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.04 1.60 5.64 -2.39 -0.01 1.58 16 38 H 0.10 2.55 7.96 -2.39 -0.02 2.53 16 39 H 0.39 6.74 9.11 -74.06 -0.67 6.07 16 40 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 42 H 0.06 1.55 7.27 -2.38 -0.02 1.54 16 43 H 0.06 1.60 6.51 -2.39 -0.02 1.58 16 44 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 45 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 2.52 5.16 -2.39 -0.01 2.51 16 47 H 0.09 2.40 7.54 -2.38 -0.02 2.38 16 Total: -1.00 -74.78 357.49 -3.90 -78.68 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.29 Total: 22.83 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 6.92 Total: 19.29 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -11.17 Total: -123.14 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.97 Total: -44.65 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -74.78 -3.90 -78.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574389308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.752 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds