Wall clock time and date at job start Tue Mar 31 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99407 * 180.02562 * 20 19 18 22 22 O 1.21279 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.99566 * 179.97438 * 21 20 19 24 24 C 1.52998 * 117.50111 * 248.62063 * 23 21 20 25 25 C 1.52998 * 60.00310 * 252.51069 * 24 23 21 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 41 41 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 42 42 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 43 43 H 1.09000 * 115.55519 * 34.33195 * 23 21 20 44 44 H 1.09002 * 117.49802 * 0.02562 * 24 23 21 45 45 H 1.09003 * 117.49924 * 145.02617 * 24 23 21 46 46 H 1.09000 * 117.50211 * 252.50554 * 25 24 23 47 47 H 1.09004 * 117.51518 * 107.47611 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.2778 -4.5621 -3.7001 22 8 9.9476 -4.3570 -2.7101 23 6 9.8698 -5.3052 -4.8698 24 6 10.1791 -6.7915 -4.6792 25 6 11.3207 -5.7751 -4.7471 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.4714 -2.8432 -0.9473 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 8.0083 -2.4998 -2.4293 41 1 7.4512 -4.0400 -1.7326 42 1 7.4683 -4.2890 -4.5463 43 1 9.5262 -4.9845 -5.8533 44 1 9.9540 -7.2318 -3.7078 45 1 10.0389 -7.4488 -5.5373 46 1 11.9315 -5.7639 -5.6498 47 1 11.8471 -5.5464 -3.8204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576628403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:11 Heat of formation + Delta-G solvation = -58.900109 kcal Electronic energy + Delta-G solvation = -23594.311597 eV Core-core repulsion = 20005.815278 eV Total energy + Delta-G solvation = -3588.496318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24519 -38.35389 -36.98500 -36.21001 -35.41032 -34.22357 -32.45689 -30.56029 -28.52159 -27.25374 -25.65262 -24.30372 -23.20194 -22.85965 -22.26529 -21.43759 -20.41865 -20.02718 -17.87061 -16.79663 -16.44445 -16.28937 -15.95968 -15.75594 -15.21218 -14.89246 -14.73133 -14.71361 -14.34214 -14.08398 -13.58271 -13.47866 -13.16848 -12.93154 -12.56103 -12.40546 -11.99819 -11.93061 -11.73791 -11.66749 -11.38461 -11.12966 -11.07612 -10.95467 -10.92968 -10.71198 -10.58769 -10.36206 -10.20061 -9.74419 -9.63857 -9.39734 -9.11449 -8.56809 -8.38018 -7.19253 -5.98121 -3.98598 2.16853 2.70027 3.36487 3.42091 3.42906 3.45409 3.99254 4.27575 4.36828 4.43762 4.47206 4.61368 4.69880 4.73857 4.80476 4.96654 5.14244 5.16116 5.24576 5.30499 5.35112 5.40195 5.49127 5.53037 5.61940 5.69544 5.70649 5.73635 5.76362 6.03078 6.07690 6.08029 6.35063 6.51848 6.71539 6.82004 7.14276 7.25565 7.31011 7.33639 7.83405 7.90627 8.05929 8.13176 8.23274 8.58652 9.08491 9.65156 11.12980 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002030 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.929429 B =13788.246428 C =14465.550862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.115 3.885 14 H 0.113 0.887 15 O -0.540 6.540 16 C 0.032 3.968 17 N -0.679 5.679 18 C 0.050 3.950 19 C 0.119 3.881 20 N -0.726 5.726 21 C 0.541 3.459 22 O -0.537 6.537 23 C -0.196 4.196 24 C -0.153 4.153 25 C -0.148 4.148 26 H 0.011 0.989 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.032 0.968 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.358 0.642 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.352 0.648 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.401 0.599 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -21.388 -14.961 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.055 3.945 14 H 0.130 0.870 15 O -0.343 6.343 16 C -0.098 4.098 17 N -0.312 5.312 18 C -0.080 4.080 19 C -0.005 4.005 20 N -0.378 5.378 21 C 0.327 3.673 22 O -0.414 6.414 23 C -0.218 4.218 24 C -0.191 4.191 25 C -0.185 4.185 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.203 0.797 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.171 0.829 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.019 -20.167 -13.785 26.403 hybrid contribution -1.680 -0.260 -0.690 1.835 sum 8.339 -20.427 -14.475 26.388 Atomic orbital electron populations 1.22192 0.88872 0.98501 1.01177 1.62038 1.06481 1.17921 1.39088 1.19792 0.95559 0.81363 0.96549 1.21149 1.34672 0.96812 1.01678 0.91912 1.24994 0.95358 0.97394 0.96975 1.69956 1.38486 1.11452 1.34025 0.86490 0.78836 0.78304 0.83718 1.20586 1.21405 1.19932 1.22669 0.95842 0.98058 0.93786 1.21998 0.95256 0.93629 0.83584 0.86971 1.86719 1.73799 1.34345 1.39413 1.22684 0.87822 0.99039 1.00268 1.60168 1.18714 1.47318 1.05027 1.22067 0.93548 0.96791 0.95587 1.21302 0.93562 0.97124 0.88526 1.45824 1.13391 1.58468 1.20084 1.19657 0.81305 0.78555 0.87745 1.90728 1.60347 1.56844 1.33450 1.22203 1.01980 0.98793 0.98790 1.22949 1.02522 0.89649 1.03960 1.22967 0.89652 1.01279 1.04603 0.97043 0.94009 0.90922 0.94995 0.99367 0.92980 0.92349 0.94924 0.79681 0.95265 0.90203 0.82891 0.94939 0.90441 0.90132 0.91391 0.76547 0.85806 0.88217 0.87731 0.87832 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.07 0.56 1.36 16 2 N -0.53 -11.44 4.59 -244.37 -1.12 -12.56 16 3 C 0.19 5.07 4.55 -4.98 -0.02 5.05 16 4 C -0.50 -14.50 8.58 -34.44 -0.30 -14.79 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.44 4.65 -3.82 -0.02 0.43 16 13 C 0.12 1.83 3.31 -26.73 -0.09 1.74 16 14 H 0.11 2.22 6.73 -51.93 -0.35 1.87 16 15 O -0.54 -8.66 12.58 -35.23 -0.44 -9.10 16 16 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 17 N -0.68 -7.85 6.50 -113.78 -0.74 -8.59 16 18 C 0.05 0.44 5.80 -3.83 -0.02 0.41 16 19 C 0.12 1.14 5.94 -4.04 -0.02 1.12 16 20 N -0.73 -5.80 5.56 -60.29 -0.33 -6.14 16 21 C 0.54 5.46 7.61 -10.99 -0.08 5.37 16 22 O -0.54 -7.80 16.26 5.56 0.09 -7.71 16 23 C -0.20 -1.31 6.19 -91.77 -0.57 -1.88 16 24 C -0.15 -0.85 10.23 -26.73 -0.27 -1.13 16 25 C -0.15 -0.96 10.04 -26.73 -0.27 -1.23 16 26 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 27 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 28 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 29 H 0.03 0.90 6.60 -51.93 -0.34 0.56 16 30 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 34 H 0.36 4.22 9.05 45.56 0.41 4.63 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.35 4.06 8.12 -39.29 -0.32 3.74 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.40 1.98 8.47 -40.82 -0.35 1.64 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -34.76 386.92 -9.73 -44.49 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.51 Total: 4.81 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.22 Total: -1.73 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -1.46 Total: -53.73 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.35 Total: -16.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.76 -9.73 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576628403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.408 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds