Wall clock time and date at job start Tue Mar 31 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99407 * 180.02562 * 20 19 18 22 22 O 1.21279 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.99566 * 179.97438 * 21 20 19 24 24 C 1.52998 * 117.50111 * 248.62063 * 23 21 20 25 25 C 1.52998 * 60.00310 * 252.51069 * 24 23 21 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 41 41 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 42 42 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 43 43 H 1.09000 * 115.55519 * 34.33195 * 23 21 20 44 44 H 1.09002 * 117.49802 * 0.02562 * 24 23 21 45 45 H 1.09003 * 117.49924 * 145.02617 * 24 23 21 46 46 H 1.09000 * 117.50211 * 252.50554 * 25 24 23 47 47 H 1.09004 * 117.51518 * 107.47611 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.2778 -4.5621 -3.7001 22 8 9.9476 -4.3570 -2.7101 23 6 9.8698 -5.3052 -4.8698 24 6 10.1791 -6.7915 -4.6792 25 6 11.3207 -5.7751 -4.7471 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.4714 -2.8432 -0.9473 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 8.0083 -2.4998 -2.4293 41 1 7.4512 -4.0400 -1.7326 42 1 7.4683 -4.2890 -4.5463 43 1 9.5262 -4.9845 -5.8533 44 1 9.9540 -7.2318 -3.7078 45 1 10.0389 -7.4488 -5.5373 46 1 11.9315 -5.7639 -5.6498 47 1 11.8471 -5.5464 -3.8204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576628403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:10 Heat of formation + Delta-G solvation = -89.360762 kcal Electronic energy + Delta-G solvation = -23595.632470 eV Core-core repulsion = 20005.815278 eV Total energy + Delta-G solvation = -3589.817192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00913 -39.61200 -37.89385 -37.19758 -36.60278 -35.15816 -34.60518 -31.67584 -29.76005 -29.13748 -26.86513 -25.53348 -24.59472 -23.31893 -23.05727 -22.72288 -21.70349 -21.08966 -18.62646 -18.52518 -17.65835 -17.33912 -17.02950 -16.70239 -16.50234 -16.26863 -15.96263 -15.70546 -15.46375 -15.25657 -14.99039 -14.69854 -14.41332 -13.99031 -13.74881 -13.59207 -13.53343 -13.11420 -12.92219 -12.58258 -12.54548 -12.51837 -12.47363 -12.43150 -12.31873 -12.13555 -11.56131 -11.52467 -11.46340 -11.33309 -11.02977 -10.75323 -10.60545 -10.19438 -9.40386 -8.93908 -8.20396 -6.29837 1.39504 1.42295 1.43189 1.52521 1.99719 2.40271 2.90728 3.02193 3.12396 3.47487 3.71589 3.71678 3.83561 3.91196 3.96522 3.98361 4.10769 4.18329 4.24073 4.35889 4.42926 4.45168 4.59505 4.63370 4.73961 4.78535 4.80098 4.84125 4.88430 4.95247 5.02890 5.08552 5.13444 5.21686 5.26207 5.31837 5.34528 5.65082 5.97648 6.07616 6.35375 6.37962 6.49352 6.66481 6.86336 7.07367 7.19635 7.39519 8.90693 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002030 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.929429 B =13788.246428 C =14465.550862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.026 3.974 13 C 0.123 3.877 14 H 0.060 0.940 15 O -0.559 6.559 16 C 0.047 3.953 17 N -0.702 5.702 18 C 0.061 3.939 19 C 0.124 3.876 20 N -0.710 5.710 21 C 0.532 3.468 22 O -0.592 6.592 23 C -0.198 4.198 24 C -0.140 4.140 25 C -0.158 4.158 26 H 0.007 0.993 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.002 0.998 30 H -0.040 1.040 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.379 0.621 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.350 0.650 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.419 0.581 43 H 0.156 0.844 44 H 0.086 0.914 45 H 0.135 0.865 46 H 0.127 0.873 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.395 -23.524 -16.272 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.103 4.103 13 C 0.063 3.937 14 H 0.078 0.922 15 O -0.365 6.365 16 C -0.083 4.083 17 N -0.335 5.335 18 C -0.068 4.068 19 C 0.000 4.000 20 N -0.363 5.363 21 C 0.320 3.680 22 O -0.473 6.473 23 C -0.219 4.219 24 C -0.177 4.177 25 C -0.196 4.196 26 H 0.026 0.974 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.020 0.980 30 H -0.023 1.023 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.256 0.744 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.153 0.847 46 H 0.145 0.855 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.689 -22.343 -15.141 28.355 hybrid contribution -1.272 0.340 -0.291 1.348 sum 7.417 -22.003 -15.432 27.880 Atomic orbital electron populations 1.22214 0.87422 1.00937 0.99987 1.61922 1.07903 1.15072 1.41814 1.19384 0.93678 0.83949 0.94662 1.21495 1.34711 0.97444 1.02519 0.92105 1.25941 0.95102 0.98165 1.00739 1.70086 1.39430 1.11873 1.36145 0.85380 0.78934 0.77285 0.79000 1.20145 1.20607 1.18692 1.22806 0.96926 0.98691 0.91844 1.21722 0.94069 0.92694 0.85264 0.92165 1.86667 1.74516 1.35484 1.39834 1.22449 0.88241 0.99724 0.97845 1.60103 1.18860 1.48503 1.06046 1.21998 0.92572 0.97648 0.94584 1.21109 0.94086 0.95883 0.88954 1.45690 1.13056 1.57292 1.20220 1.20377 0.81424 0.78137 0.88041 1.90704 1.61730 1.59078 1.35783 1.22291 1.01859 0.99272 0.98457 1.23043 1.00957 0.89201 1.04492 1.23022 0.89940 1.02186 1.04435 0.97394 0.89710 0.92918 0.97956 1.02267 0.92755 0.88230 0.95294 0.77277 0.91976 0.90094 0.83040 0.92390 0.89691 0.92933 0.92512 0.74368 0.82645 0.89590 0.84729 0.85451 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.31 127.69 1.19 2.79 16 2 N -0.54 -23.36 4.59 -927.06 -4.25 -27.61 16 3 C 0.21 11.49 4.55 85.56 0.39 11.88 16 4 C -0.52 -30.80 8.58 25.60 0.22 -30.58 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 7 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 8 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.03 0.86 4.65 86.30 0.40 1.26 16 13 C 0.12 3.87 3.31 30.59 0.10 3.97 16 14 H 0.06 2.54 6.73 -2.39 -0.02 2.52 16 15 O -0.56 -17.47 12.58 -148.98 -1.87 -19.34 16 16 C 0.05 1.03 5.39 86.30 0.47 1.50 16 17 N -0.70 -15.61 6.50 -513.89 -3.34 -18.95 16 18 C 0.06 0.96 5.80 86.31 0.50 1.46 16 19 C 0.12 2.38 5.94 86.38 0.51 2.89 16 20 N -0.71 -10.60 5.56 -463.06 -2.57 -13.17 16 21 C 0.53 10.64 7.61 87.66 0.67 11.31 16 22 O -0.59 -18.12 16.26 -3.03 -0.05 -18.17 16 23 C -0.20 -2.30 6.19 -11.54 -0.07 -2.37 16 24 C -0.14 -1.29 10.23 30.59 0.31 -0.97 16 25 C -0.16 -1.92 10.04 30.60 0.31 -1.61 16 26 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 27 H 0.08 2.44 7.85 -2.39 -0.02 2.42 16 28 H 0.05 2.16 7.01 -2.39 -0.02 2.14 16 29 H 0.00 0.14 6.60 -2.39 -0.02 0.13 16 30 H -0.04 -2.38 8.07 -2.38 -0.02 -2.40 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.10 2.43 7.75 -2.39 -0.02 2.42 16 33 H 0.03 0.97 8.00 -2.39 -0.02 0.96 16 34 H 0.38 7.99 9.05 -74.06 -0.67 7.33 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.35 7.89 8.12 -89.69 -0.73 7.16 16 38 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.42 3.09 8.47 -92.71 -0.79 2.31 16 43 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.45 7.67 -2.38 -0.02 1.43 16 Total: -1.00 -80.11 386.92 -5.53 -85.64 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -1.21 Total: 19.57 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.46 Total: 1.87 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -9.88 Total: -117.46 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.92 Total: -37.51 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -80.11 -5.53 -85.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576628403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.722 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds