Wall clock time and date at job start Tue Mar 31 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00281 * 2 1 4 4 H 1.09007 * 109.47049 * 330.00332 * 3 2 1 5 5 C 1.53000 * 109.47213 * 89.99657 * 3 2 1 6 6 C 1.52999 * 109.47243 * 210.00130 * 3 2 1 7 7 N 1.46498 * 109.47186 * 64.99923 * 6 3 2 8 8 C 1.46502 * 120.00019 * 270.00080 * 7 6 3 9 9 C 1.34780 * 120.00118 * 89.99951 * 7 6 3 10 10 O 1.21588 * 119.99678 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00118 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99857 * 180.02562 * 11 9 7 13 13 C 1.53045 * 109.45727 * 275.02719 * 12 11 9 14 14 C 1.53194 * 109.30844 * 178.60262 * 13 12 11 15 15 N 1.46930 * 108.76426 * 54.65495 * 14 13 12 16 16 C 1.36939 * 120.62471 * 126.40714 * 15 14 13 17 17 H 1.08003 * 120.00421 * 331.81505 * 16 15 14 18 18 C 1.38809 * 119.99704 * 151.82593 * 16 15 14 19 19 N 1.31620 * 120.00223 * 343.07006 * 18 16 15 20 20 Si 1.86802 * 120.00246 * 163.07469 * 18 16 15 21 21 H 1.48506 * 109.46830 * 59.99512 * 20 18 16 22 22 H 1.48500 * 109.47507 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47181 * 299.99721 * 20 18 16 24 24 C 1.46920 * 118.74139 * 306.38296 * 15 14 13 25 25 C 1.53041 * 109.45861 * 154.97457 * 12 11 9 26 26 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47077 * 300.00297 * 1 2 3 28 28 H 1.09002 * 109.47424 * 59.99858 * 1 2 3 29 29 H 1.08997 * 109.47287 * 180.02562 * 5 3 2 30 30 H 1.09007 * 109.46563 * 60.00377 * 5 3 2 31 31 H 1.08997 * 109.47522 * 300.01039 * 5 3 2 32 32 H 1.09004 * 109.47125 * 185.00022 * 6 3 2 33 33 H 1.09000 * 109.47309 * 304.99672 * 6 3 2 34 34 H 1.08993 * 109.47291 * 89.99919 * 8 7 6 35 35 H 1.08999 * 109.47062 * 210.00095 * 8 7 6 36 36 H 1.09000 * 109.47206 * 329.99691 * 8 7 6 37 37 H 0.96999 * 119.99556 * 0.02562 * 11 9 7 38 38 H 1.08995 * 109.46233 * 34.99826 * 12 11 9 39 39 H 1.09000 * 109.49411 * 298.56450 * 13 12 11 40 40 H 1.08993 * 109.49480 * 58.66589 * 13 12 11 41 41 H 1.08996 * 109.60028 * 294.86738 * 14 13 12 42 42 H 1.09000 * 109.70271 * 174.50367 * 14 13 12 43 43 H 0.97003 * 120.00291 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58252 * 293.82385 * 24 15 14 45 45 H 1.08998 * 109.70421 * 173.46713 * 24 15 14 46 46 H 1.08999 * 109.49375 * 301.33357 * 25 12 11 47 47 H 1.08999 * 109.49590 * 61.39891 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7213 7 7 3.1476 0.9331 -2.1328 8 6 3.1492 -0.4665 -2.5659 9 6 2.9518 1.9168 -3.0331 10 8 2.9501 3.0783 -2.6735 11 7 2.7580 1.6131 -4.3318 12 6 2.5457 2.6825 -5.3103 13 6 1.0649 3.0685 -5.3305 14 6 0.8527 4.2106 -6.3293 15 7 1.3873 3.8016 -7.6353 16 6 0.6069 3.8633 -8.7589 17 1 -0.4654 3.7629 -8.6778 18 6 1.1940 4.0547 -10.0020 19 7 2.4284 4.5041 -10.0848 20 14 0.2324 3.6745 -11.5577 21 1 -0.9885 4.5187 -11.6037 22 1 1.0773 3.9617 -12.7447 23 1 -0.1564 2.2413 -11.5615 24 6 2.7752 3.3259 -7.7130 25 6 2.9660 2.1941 -6.6985 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.6606 2.7673 1.4425 30 1 2.8829 1.0774 1.9563 31 1 1.2569 1.8014 1.9564 32 1 3.8427 2.2370 -0.6443 33 1 3.9931 0.5051 -0.2618 34 1 2.1364 -0.8654 -2.5096 35 1 3.5074 -0.5284 -3.5935 36 1 3.8049 -1.0469 -1.9170 37 1 2.7590 0.6864 -4.6185 38 1 3.1437 3.5510 -5.0345 39 1 0.4684 2.2070 -5.6305 40 1 0.7603 3.3940 -4.3359 41 1 1.3764 5.1014 -5.9827 42 1 -0.2120 4.4252 -6.4212 43 1 2.8385 4.6381 -10.9535 44 1 3.4557 4.1447 -7.4793 45 1 2.9809 2.9551 -8.7171 46 1 4.0145 1.8971 -6.6776 47 1 2.3517 1.3405 -6.9852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588132361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:38 Heat of formation + Delta-G solvation = -51.266132 kcal Electronic energy + Delta-G solvation = -25614.534598 eV Core-core repulsion = 22026.369314 eV Total energy + Delta-G solvation = -3588.165284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.24044 -38.49047 -37.40381 -35.34260 -34.42502 -32.54276 -31.69966 -30.06267 -29.30771 -27.55632 -26.89098 -25.88032 -24.57781 -22.27356 -22.06553 -21.43361 -19.80746 -19.26674 -17.97992 -16.92737 -16.57556 -16.42968 -16.00178 -15.27217 -14.95841 -14.67147 -14.32340 -14.06620 -13.67930 -13.54492 -13.33794 -13.11639 -12.94608 -12.87704 -12.67877 -12.50128 -12.39749 -12.19080 -11.95321 -11.69495 -11.42447 -11.08702 -10.96168 -10.79053 -10.70185 -10.46847 -10.25429 -10.02961 -10.01412 -9.87514 -9.71925 -9.50805 -8.81442 -8.49337 -8.36580 -6.66336 -5.77947 -3.20097 2.74408 3.34468 3.39168 3.44812 3.45994 3.58716 4.08142 4.50804 4.68757 4.86088 4.92634 5.03296 5.11162 5.20311 5.24227 5.33015 5.36997 5.41151 5.44830 5.51943 5.53676 5.55771 5.63909 5.66154 5.71493 5.88589 5.93868 6.11256 6.32265 6.36887 6.41669 6.56327 6.62609 6.64417 6.82913 6.90831 6.99979 7.02202 7.13103 7.34521 7.63988 7.80383 8.11957 8.46399 8.78021 9.22503 9.85787 10.43164 11.30986 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.003018 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.584628 B = 9275.266171 C = 9436.817483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.066 3.934 4 H 0.066 0.934 5 C -0.171 4.171 6 C 0.140 3.860 7 N -0.634 5.634 8 C 0.089 3.911 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.738 5.738 12 C 0.168 3.832 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.175 3.825 25 C -0.146 4.146 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -11.383 19.560 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.007 3.993 4 H 0.084 0.916 5 C -0.229 4.229 6 C 0.016 3.984 7 N -0.371 5.371 8 C -0.055 4.055 9 C 0.404 3.596 10 O -0.470 6.470 11 N -0.393 5.393 12 C 0.064 3.936 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.049 3.951 25 C -0.186 4.186 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.368 -10.635 19.624 22.363 hybrid contribution -0.747 -0.543 -0.893 1.284 sum 0.621 -11.178 18.732 21.822 Atomic orbital electron populations 1.22730 0.81350 1.02372 0.99908 1.87868 1.19441 1.27779 1.95095 1.22674 0.96094 0.84932 0.95570 0.91569 1.22206 1.02435 1.01894 0.96400 1.21430 0.95027 1.02845 0.79083 1.46954 1.77019 1.05867 1.07272 1.21640 1.02038 0.81872 0.99921 1.15985 0.77868 0.84595 0.81194 1.90901 1.59109 1.17821 1.79191 1.45690 1.76818 1.10666 1.06095 1.20909 0.96767 0.89136 0.86823 1.22378 0.95616 1.00485 0.99371 1.20875 0.97702 0.93216 0.86114 1.44085 1.10721 1.73920 1.02826 1.19152 0.90617 1.43686 0.84770 0.91720 1.25051 0.96909 0.99452 0.98234 1.70017 1.14041 1.47154 1.23580 0.86364 0.79174 0.78367 0.82825 1.20899 1.21643 1.21066 1.20728 0.85355 0.91608 0.97427 1.22541 0.99508 1.01752 0.94800 0.89873 0.94347 0.94102 0.91220 0.91755 0.92392 0.88485 0.90047 0.92614 0.91909 0.91093 0.77401 0.90108 0.92548 0.92842 0.96179 0.92655 0.93554 0.96104 0.89071 0.92807 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -3.98 9.90 -35.23 -0.35 -4.33 16 3 C 0.07 0.69 2.96 -26.73 -0.08 0.61 16 4 H 0.07 0.83 7.79 -51.92 -0.40 0.43 16 5 C -0.17 -1.40 9.53 37.16 0.35 -1.05 16 6 C 0.14 1.48 5.14 -4.04 -0.02 1.46 16 7 N -0.63 -7.67 2.84 -187.35 -0.53 -8.20 16 8 C 0.09 0.80 9.85 59.85 0.59 1.39 16 9 C 0.70 11.09 8.24 -86.92 -0.72 10.37 16 10 O -0.59 -11.54 15.58 5.29 0.08 -11.46 16 11 N -0.74 -11.11 4.94 -58.63 -0.29 -11.40 16 12 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 13 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 14 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 20 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.18 4.16 5.30 -3.72 -0.02 4.14 16 25 C -0.15 -2.73 5.55 -26.61 -0.15 -2.87 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.10 1.12 7.42 -51.93 -0.39 0.73 16 33 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 6.36 -51.93 -0.33 0.18 16 36 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 37 H 0.39 4.90 6.33 -40.82 -0.26 4.64 16 38 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 1.19 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -32.16 371.54 -8.26 -40.42 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.33 Total: 2.20 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 0.48 Total: 11.63 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.72 Total: -60.66 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.27 Total: -15.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.16 -8.26 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588132361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.848 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds